FvH4_3g28681

protein FAR1-RELATED SEQUENCE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000143
Physical Location & Seq
Reverse (-)
21660383 .. 21661561
1179 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g28681.t1

Sequence Viewer

Length: 1179 bp
ATGCAAAAAGAGGAACAAGAGGATTATGAGTGGGCTCTTGAGATGTTTAGTAAGTTGTTGGGTTTTGGTGATCATCCGTTGGCCATTATTACTGATAGGGAGTTGGCACTAATGAAAGCAATAGAAGTTGTGTTCCCGATGACTCCTAACCTTTTGTGCATATGGCATATTGAGAAAAATATTGTTGCACATTGTAAAAGTCAGTTTAAGGAAAAAGCTGATTGGGTTGCTTTTATGTCTTCTTGGGTTGCCTTAGTGAAATCTTGGAATGTGGCATTGTTTAATGAAGCTTGGAATCGTTTTCAAATTGAATACAAAGATTATGCTAAAGTTCTGACTTATATTGAAAAAACTTGGCTTCCATGGAAAGAAAAGTTTGTAGTTGCATGGACGGGGCAGATTTCCCATTTTAGTAATAGTGTTACTTCTAGGGCAGAAGGTGCACATGCAACCATAAAGAGATATCTTCAAGTTTCAACGGGTGGTCTTCGTGAAGTGAAGGAAAATATTTGTCTTGCTATTGAAAACCAATTTCAAGAAATTAAAACTCAACTTGCAAGTGAAAAGATTCGTGTTCCTCAAAAGCTTTGCATCCCCTTCTTTAAAGAGACAGTGAATAAGGTATCATTCCATGCTTTGTATGAGTTACAAAAACAATATTTGCTGGCAAATACCAAAGACTATTCATCTCAATGTAAGGGCCAATTTTACAAAACCATGGGTCTTCCTTGTGTGCACATGATCAAGGAGATGAATATTGAAGTGTGTTCTGTAAATCAGATTCATATGCAGTGGAGGATTGACACAAGATCTTTCACTAATGATCAACATGCAAGCTTGGATCATGAAGATCCTCTCACTAGTCTCTTGTCTAAGATTAAAGAGAAATATGAAAAGCAGCCGCTAATGCAAAAAGAGAATACCATAAGGCAGCTTTCTCATATTCTTGGCGCATCTTGCCCCTTCCTTTTTGAACCTACTATTCAGCCTCATAAAGGTCGACCGGTAGGATCAACTAATAGAAAGGAAACTTGTTCTACAAAGAGGGAAACCTCATACTTTGAGGTAGTGGATAAGACACCTCGGAAATGTAGTGGTTGCGGTAATCCTGGCCATAATCGTAACAAGTGTCCATCAATCAACAAGTCTACTACACCATATGTGAGGAGTAATGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE

Protein Analysis

393

Amino Acids

45.41

Weight (kDa)

8.91

Isoelectric Point (pI)

39.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MULE PF10551 1 - 60 2.4e-11 MULE transposase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000143)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G76710 AT1G76710 AT1G76710 AT1G76710
fragaria_vesca FvH4_1g20063 FvH4_2g15231 FvH4_3g04011 FvH4_3g28681 FvH4_4g01411 FvH4_4g10181 FvH4_4g15922 FvH4_4g16651 FvH4_4g16652 FvH4_5g13892 FvH4_5g13893 FvH4_5g20623 FvH4_5g20623 FvH4_5g20623 FvH4_5g20623 FvH4_5g25511 FvH4_6g12551 FvH4_6g12552 FvH4_6g38841 FvH4_7g04391
malus_domestica MD05G1031300.v1.1 MD05G1031400.v1.1 MD05G1031500.v1.1 MD08G1164400.v1.1 MD10G1032900.v1.1 MD10G1033000.v1.1 MD10G1033100.v1.1
prunus_persica Prupe.3G240700_v2.0.a1 Prupe.7G144600_v2.0.a1 Prupe.8G038500_v2.0.a1 Prupe.8G038500_v2.0.a1
pyrus_communis pycom05g02250 pycom05g02260 pycom05g02270 pycom05g02280 pycom08g14160 pycom10g02100 pycom10g02110 pycom10g02130
rosa_chinensis RchiOBHm_Chr1g0329481 RchiOBHm_Chr1g0329491 RchiOBHm_Chr1g0341531 RchiOBHm_Chr3g0464811 RchiOBHm_Chr3g0494701 RchiOBHm_Chr3g0497501 RchiOBHm_Chr4g0385841 RchiOBHm_Chr5g0061181 RchiOBHm_Chr6g0263001 RchiOBHm_Chr7g0193111 RchiOBHm_Chr7g0206281 RchiOBHm_Chr7g0206311
rosa_laevigata RLG00000018908 RLG00000028528 RLG00000028803 RLG00000029882 RLG00000029883 RLG00000030361
rosa_multiflora Rmu_co8196328.1_g000001 Rmu_co8259135.1_g000001 Rmu_co8269185.1_g000001 Rmu_sc0000076.1_g000019 Rmu_sc0000311.1_g000007 Rmu_sc0000429.1_g000038 Rmu_sc0000429.1_g000039 Rmu_sc0000429.1_g000040 Rmu_sc0000511.1_g000005 Rmu_sc0000539.1_g000054 Rmu_sc0000566.1_g000039 Rmu_sc0000805.1_g000032 Rmu_sc0000870.1_g000073 Rmu_sc0000870.1_g000074 Rmu_sc0001010.1_g000018 Rmu_sc0001083.1_g000013 Rmu_sc0001114.1_g000011 Rmu_sc0001702.1_g000027 Rmu_sc0001779.1_g000012 Rmu_sc0002923.1_g000036 Rmu_sc0003242.1_g000011 Rmu_sc0003291.1_g000036 Rmu_sc0003393.1_g000012 Rmu_sc0003872.1_g000016 Rmu_sc0003872.1_g000017 Rmu_sc0003872.1_g000018 Rmu_sc0004084.1_g000020 Rmu_sc0004386.1_g000005 Rmu_sc0004622.1_g000005 Rmu_sc0004742.1_g000021 Rmu_sc0004755.1_g000020 Rmu_sc0004805.1_g000036 Rmu_sc0005065.1_g000006 Rmu_sc0005177.1_g000004 Rmu_sc0006373.1_g000003 Rmu_sc0006373.1_g000004 Rmu_sc0007121.1_g000002 Rmu_sc0007943.1_g000003 Rmu_sc0010368.1_g000006 Rmu_sc0010543.1_g000001 Rmu_sc0012591.1_g000006 Rmu_sc0013504.1_g000009 Rmu_sc0015025.1_g000001 Rmu_sc0016170.1_g000001 Rmu_sc0017156.1_g000001 Rmu_sc0026439.1_g000001
rosa_roxburghii Rroxscaffold_175G00432280 Rroxscaffold_1G00030190 Rroxscaffold_1G00030880 Rroxscaffold_2G00090520 Rroxscaffold_3G00227940 Rroxscaffold_3G00233400 Rroxscaffold_3G00238500 Rroxscaffold_3G00251650 Rroxscaffold_4G00301570 Rroxscaffold_4G00321040 Rroxscaffold_5G00350880 Rroxscaffold_7G00184400
rosa_rugosa Rorug01G0080800 Rorug01G0080900 Rorug01G0193900 Rorug02G0275900 Rorug02G0275900 Rorug02G0275900 Rorug02G0305400 Rorug02G0311800 Rorug02G0350400 Rorug02G0381300 Rorug03G0136700 Rorug03G0181900 Rorug03G0268000 Rorug04G0301600 Rorug05G0175100 Rorug05G0250700 Rorug05G0298200 Rorug05G0596000 Rorug06G0029500 Rorug07G0094300 Rorug07G0094300 Rorug07G0095400 Rorug07G0140100
rosa_samantha Rh1AG099200 Rh1AG190500 Rh1BG078900 Rh1BG079000 Rh1BG079100 Rh1CG084600 Rh1CG084700 Rh1CG095300 Rh1CG175900 Rh1DG103300 Rh1DG150400 Rh2AG079300 Rh2AG272400 Rh2AG464800 Rh2AG507400 Rh2DG078300 Rh2DG078400 Rh3CG206900 Rh3CG295400 Rh3DG206800 Rh3DG356200 Rh4CG071500 Rh4CG179200 Rh4DG064700 Rh5CG362400 Rh7AG212300 Rh7AG226200 Rh7BG222200
rosa_wichuraiana Rw0G009990 Rw0G011260 Rw0G011270 Rw0G012910 Rw0G013740 Rw1G007740 Rw1G013050 Rw1G014230 Rw2G014270 Rw3G012720 Rw3G028110 Rw4G006630 Rw4G015270 Rw4G016160 Rw4G031380 Rw5G011440 Rw5G029180 Rw5G048360 Rw5G048430 Rw5G048780 Rw6G005250 Rw6G006390 Rw7G002840 Rw7G014080 Rw7G019650 Rw7G032790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 1000, 1148
AciI CCGC 2 cut(s) 902, 1101
AclWI GGATC 3 cut(s) 845, 849, 1018
AcoI YGGCCR 2 cut(s) 81, 1111
AfiI CCNNNNNNNGG 1 cut(s) 995
AgeI ACCGGT 1 cut(s) 1003
AgsI TTSAA 9 cut(s) 305, 311, 347, 470, 477, 524, 536, 761, 974
AhlI ACTAGT 1 cut(s) 860
AjnI CCWGG 1 cut(s) 1108
AluBI AGCT 5 cut(s) 218, 290, 586, 837, 934
AluI AGCT 5 cut(s) 218, 290, 586, 837, 934
Alw21I GWGCWC 2 cut(s) 445, 738
Alw26I GTCTC 2 cut(s) 602, 869
Alw44I GTGCAC 2 cut(s) 441, 734
AlwI GGATC 3 cut(s) 845, 849, 1018
AoxI GGCC 3 cut(s) 81, 700, 1111
ApaLI GTGCAC 2 cut(s) 441, 734
ApeKI GCWGC 2 cut(s) 898, 931
AsiGI ACCGGT 1 cut(s) 1003
Asp700I GAANNNNTTC 1 cut(s) 567
AspLEI GCGC 1 cut(s) 953
AspS9I GGNCC 1 cut(s) 700
AsuHPI GGTGA 1 cut(s) 80
BaeGI GKGCMC 2 cut(s) 445, 738
BalI TGGCCA 2 cut(s) 83, 1113
BanII GRGCYC 1 cut(s) 37
BbsI GAAGAC 3 cut(s) 231, 479, 716
Bbv12I GWGCWC 2 cut(s) 445, 738
BbvI GCAGC 2 cut(s) 910, 943
BccI CCATC 1 cut(s) 1141
BciT130I CCWGG 1 cut(s) 1110
BclI TGATCA 3 cut(s) 70, 741, 823
BcoDI GTCTC 2 cut(s) 602, 869
BcuI ACTAGT 1 cut(s) 860
BfaI CTAG 2 cut(s) 429, 861
BglII AGATCT 1 cut(s) 809
BisI GCNGC 3 cut(s) 899, 902, 932
BlsI GCNGC 3 cut(s) 900, 903, 933
Bme1390I CCNGG 1 cut(s) 1110
BmgT120I GGNCC 1 cut(s) 700
BmrFI CCNGG 1 cut(s) 1110
BmsI GCATC 2 cut(s) 600, 962
BpiI GAAGAC 3 cut(s) 231, 479, 716
BpuEI CTTGAG 1 cut(s) 59
BsaJI CCNNGG 3 cut(s) 362, 717, 1082
BsaWI WCCGGW 1 cut(s) 1003
Bsc4I CCNNNNNNNGG 1 cut(s) 995
Bse118I RCCGGY 1 cut(s) 1003
BseBI CCWGG 1 cut(s) 1110
BseDI CCNNGG 3 cut(s) 362, 717, 1082
BseGI GGATG 2 cut(s) 73, 591
BseLI CCNNNNNNNGG 1 cut(s) 995
BseSI GKGCMC 2 cut(s) 445, 738
BseXI GCAGC 2 cut(s) 910, 943
Bsh1285I CGRYCG 1 cut(s) 1004
BshFI GGCC 3 cut(s) 83, 702, 1113
BshTI ACCGGT 1 cut(s) 1003
BsiEI CGRYCG 1 cut(s) 1004
BsiHKAI GWGCWC 2 cut(s) 445, 738
BsiSI CCGG 1 cut(s) 1004
BslI CCNNNNNNNGG 1 cut(s) 995
BsmAI GTCTC 2 cut(s) 602, 869
BsnI GGCC 3 cut(s) 83, 702, 1113
Bsp1286I GDGCHC 3 cut(s) 37, 445, 738
Bsp143I GATC 7 cut(s) 70, 741, 809, 823, 841, 850, 1010
Bsp19I CCATGG 2 cut(s) 362, 717
BspACI CCGC 2 cut(s) 902, 1101
BspANI GGCC 3 cut(s) 83, 702, 1113
BspHI TCATGA 1 cut(s) 844
BspPI GGATC 3 cut(s) 845, 849, 1018
BsrFI RCCGGY 1 cut(s) 1003
BssAI RCCGGY 1 cut(s) 1003
BssECI CCNNGG 3 cut(s) 362, 717, 1082
BssMI GATC 7 cut(s) 70, 741, 809, 823, 841, 850, 1010
BssT1I CCWWGG 2 cut(s) 362, 717
Bst2UI CCWGG 1 cut(s) 1110
Bst4CI ACNGT 1 cut(s) 613
BstAPI GCANNNNNTGC 1 cut(s) 440
BstC8I GCNNGC 2 cut(s) 666, 835
BstDEI CTNAG 3 cut(s) 253, 873, 1176
BstDSI CCRYGG 2 cut(s) 362, 717
BstENI CCTNNNNNAGG 1 cut(s) 993
BstF5I GGATG 2 cut(s) 73, 591
BstHHI GCGC 1 cut(s) 953
BstKTI GATC 7 cut(s) 73, 744, 812, 826, 844, 853, 1013
BstMAI GTCTC 2 cut(s) 602, 869
BstMBI GATC 7 cut(s) 70, 741, 809, 823, 841, 850, 1010
BstMCI CGRYCG 1 cut(s) 1004
BstMWI GCNNNNNNNGC 3 cut(s) 440, 907, 957
BstNI CCWGG 1 cut(s) 1110
BstNSI RCATGY 2 cut(s) 449, 833
BstSCI CCNGG 1 cut(s) 1108
BstSLI GKGCMC 2 cut(s) 445, 738
BstV1I GCAGC 2 cut(s) 910, 943
BstV2I GAAGAC 3 cut(s) 231, 479, 716
BstX2I RGATCY 2 cut(s) 809, 850
BstYI RGATCY 2 cut(s) 809, 850
BsuRI GGCC 3 cut(s) 83, 702, 1113
BtgI CCRYGG 2 cut(s) 362, 717
BtsCI GGATG 2 cut(s) 73, 591
BtsI GCAGTG 1 cut(s) 797
BtsIMutI CAGTG 2 cut(s) 618, 797
Cac8I GCNNGC 2 cut(s) 666, 835
CciI TCATGA 1 cut(s) 844
CfoI GCGC 1 cut(s) 953
Cfr10I RCCGGY 1 cut(s) 1003
Cfr13I GGNCC 1 cut(s) 700
CspAI ACCGGT 1 cut(s) 1003
CviAII CATG 8 cut(s) 363, 387, 446, 632, 718, 739, 830, 845
DdeI CTNAG 3 cut(s) 253, 873, 1176
DpnI GATC 7 cut(s) 72, 743, 811, 825, 843, 852, 1012
DpnII GATC 7 cut(s) 70, 741, 809, 823, 841, 850, 1010
DraI TTTAAA 1 cut(s) 604
EaeI YGGCCR 2 cut(s) 81, 1111
Eco130I CCWWGG 2 cut(s) 362, 717
Eco24I GRGCYC 1 cut(s) 37
Eco32I GATATC 1 cut(s) 464
EcoNI CCTNNNNNAGG 1 cut(s) 993
EcoRII CCWGG 1 cut(s) 1108
EcoRV GATATC 1 cut(s) 464
EcoT14I CCWWGG 2 cut(s) 362, 717
EcoT38I GRGCYC 1 cut(s) 37
ErhI CCWWGG 2 cut(s) 362, 717
FaeI CATG 8 cut(s) 366, 390, 449, 635, 721, 742, 833, 848
FatI CATG 8 cut(s) 362, 386, 445, 631, 717, 738, 829, 844
FauNDI CATATG 3 cut(s) 161, 786, 1159
FbaI TGATCA 3 cut(s) 70, 741, 823
FblI GTMKAC 2 cut(s) 1000, 1148
Fnu4HI GCNGC 3 cut(s) 899, 902, 932
FokI GGATG 2 cut(s) 60, 578
FriOI GRGCYC 1 cut(s) 37
Fsp4HI GCNGC 3 cut(s) 899, 902, 932
FspBI CTAG 2 cut(s) 429, 861
GlaI GCGC 1 cut(s) 952
GluI GCNGC 3 cut(s) 899, 902, 932
HaeIII GGCC 3 cut(s) 83, 702, 1113
HapII CCGG 1 cut(s) 1004
HhaI GCGC 1 cut(s) 953
Hin1II CATG 8 cut(s) 366, 390, 449, 635, 721, 742, 833, 848
Hin6I GCGC 1 cut(s) 951
HinP1I GCGC 1 cut(s) 951
HincII GTYRAC 1 cut(s) 1001
HindII GTYRAC 1 cut(s) 1001
HindIII AAGCTT 3 cut(s) 288, 584, 835
HinfI GANTC 4 cut(s) 142, 295, 568, 781
HpaII CCGG 1 cut(s) 1004
HphI GGTGA 1 cut(s) 80
Hpy166II GTNNAC 4 cut(s) 443, 736, 1001, 1149
Hpy188I TCNGA 3 cut(s) 336, 780, 1086
Hpy188III TCNNGA 5 cut(s) 38, 136, 491, 536, 845
Hpy8I GTNNAC 4 cut(s) 443, 736, 1001, 1149
HpyAV CCTTC 4 cut(s) 431, 493, 607, 973
HpyCH4III ACNGT 1 cut(s) 613
HpyF10VI GCNNNNNNNGC 3 cut(s) 440, 907, 957
HpyF3I CTNAG 3 cut(s) 253, 873, 1176
Hsp92II CATG 8 cut(s) 366, 390, 449, 635, 721, 742, 833, 848
HspAI GCGC 1 cut(s) 951
Ksp22I TGATCA 3 cut(s) 70, 741, 823
Kzo9I GATC 7 cut(s) 70, 741, 809, 823, 841, 850, 1010
LpnPI CCDG 4 cut(s) 650, 1017, 1095, 1122
Lsp1109I GCAGC 2 cut(s) 910, 943
LweI GCATC 2 cut(s) 600, 962
MaeI CTAG 2 cut(s) 429, 861
MaeIII GTNAC 3 cut(s) 421, 645, 1121
MalI GATC 7 cut(s) 72, 743, 811, 825, 843, 852, 1012
MboI GATC 7 cut(s) 70, 741, 809, 823, 841, 850, 1010
MboII GAAGA 5 cut(s) 231, 458, 479, 716, 860
MflI RGATCY 2 cut(s) 809, 850
MhlI GDGCHC 3 cut(s) 37, 445, 738
MlsI TGGCCA 2 cut(s) 83, 1113
MluCI AATT 4 cut(s) 306, 530, 540, 704
MluNI TGGCCA 2 cut(s) 83, 1113
MlyI GAGTC 1 cut(s) 136
Mox20I TGGCCA 2 cut(s) 83, 1113
MroXI GAANNNNTTC 1 cut(s) 567
MscI TGGCCA 2 cut(s) 83, 1113
MseI TTAA 5 cut(s) 207, 282, 543, 603, 879
MslI CAYNNNNRTG 1 cut(s) 691
Msp20I TGGCCA 2 cut(s) 83, 1113
MspI CCGG 1 cut(s) 1004
MspR9I CCNGG 1 cut(s) 1110
MvaI CCWGG 1 cut(s) 1110
MwoI GCNNNNNNNGC 3 cut(s) 440, 907, 957
NcoI CCATGG 2 cut(s) 362, 717
NdeI CATATG 3 cut(s) 161, 786, 1159
NdeII GATC 7 cut(s) 70, 741, 809, 823, 841, 850, 1010
NlaIII CATG 8 cut(s) 366, 390, 449, 635, 721, 742, 833, 848
NspI RCATGY 2 cut(s) 449, 833
PagI TCATGA 1 cut(s) 844
PdmI GAANNNNTTC 1 cut(s) 567
PfeI GAWTC 3 cut(s) 295, 568, 781
PinAI ACCGGT 1 cut(s) 1003
PkrI GCNGC 3 cut(s) 900, 903, 933
PleI GAGTC 1 cut(s) 136
PpsI GAGTC 1 cut(s) 136
Psp6I CCWGG 1 cut(s) 1108
PspGI CCWGG 1 cut(s) 1108
PspPI GGNCC 1 cut(s) 700
PsuI RGATCY 2 cut(s) 809, 850
RseI CAYNNNNRTG 1 cut(s) 691
SalI GTCGAC 1 cut(s) 999
SaqAI TTAA 5 cut(s) 207, 282, 543, 603, 879
SatI GCNGC 3 cut(s) 899, 902, 932
Sau3AI GATC 7 cut(s) 70, 741, 809, 823, 841, 850, 1010
Sau96I GGNCC 1 cut(s) 700
SchI GAGTC 1 cut(s) 136
ScrFI CCNGG 1 cut(s) 1110
SduI GDGCHC 3 cut(s) 37, 445, 738
SfaNI GCATC 2 cut(s) 600, 962
SmiMI CAYNNNNRTG 1 cut(s) 691
SmlI CTYRAG 1 cut(s) 38
SmoI CTYRAG 1 cut(s) 38
SpeI ACTAGT 1 cut(s) 860
Sse9I AATT 4 cut(s) 306, 530, 540, 704
SsiI CCGC 2 cut(s) 902, 1101
SspI AATATT 4 cut(s) 181, 508, 659, 757
SspMI CTAG 2 cut(s) 429, 861
StyD4I CCNGG 1 cut(s) 1108
StyI CCWWGG 2 cut(s) 362, 717
TaaI ACNGT 1 cut(s) 613
TaqI TCGA 1 cut(s) 1000
TasI AATT 4 cut(s) 306, 530, 540, 704
TauI GCSGC 1 cut(s) 904
TfiI GAWTC 3 cut(s) 295, 568, 781
Tru1I TTAA 5 cut(s) 207, 282, 543, 603, 879
Tru9I TTAA 5 cut(s) 207, 282, 543, 603, 879
TscAI CASTG 2 cut(s) 618, 797
TseI GCWGC 2 cut(s) 898, 931
TspDTI ATGAA 7 cut(s) 128, 300, 675, 767, 773, 861, 906
TspGWI ACGGA 1 cut(s) 66
TspRI CASTG 2 cut(s) 618, 797
VneI GTGCAC 2 cut(s) 441, 734
XagI CCTNNNNNAGG 1 cut(s) 993
XceI RCATGY 2 cut(s) 449, 833
XmiI GTMKAC 2 cut(s) 1000, 1148
XmnI GAANNNNTTC 1 cut(s) 567
XspI CTAG 2 cut(s) 429, 861
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.