Rorug04G0301600

protein FAR1-RELATED SEQUENCE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0000143
Physical Location & Seq
Reverse (-)
47696508 .. 47698735
2228 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0301600.1

Sequence Viewer

Length: 1488 bp
ATGGCTTCTTCTTCAGTCTCAGTCTCAGTCTCAGTCTCACTCTCCTTCTCTTCTTCTCTCCACCCTCATCCCCTCTCCCCCAACAAGAGCCCCACCGCTCACAGAGCCCAAGACCCCACCTTTAAGCCGGCCCACTGCGCCTACGCAGCACCAGCTAAGAGCACTAGGTCTGCTAACTCCTCTTCTTCGTCTTCTCAGACCAGAAAGCGGCACTGGAAGCAAGGTGAATACCCAGGTGTTTCAGAGACTCCCATCCCCAGAAGAACGCCTCTCAAGAATGTCAAGAAGAAGCTTGACCGCAAGGACAAGGCCAAGGCTTGGGTCAACACCGTCACTGAAGAATTCTGTCACTCCATCGACAACAAGCAATGGCTCCGAGCCCTTGAGGTGTTTGAAATGCTTAAAGAGCAACCCTTTTATCAACCGAAAGAAGGGACTTACATGAGGCTCCTTCTTCTGCTCGGACGGTCTGGCCAACCTCAGCGTGCCCAGTGTCTTTTCGACGAAATGGTTGAAGAAGGGTGTCAACCAACTGCTGAACTGTACACAGCCCTGCTTACAGCTTACTGCAGGAGCAATCTTATTCATGACGCGTTTTCTGTTCTTAACCAGATGAAGACGTTCCCTCAGTGCCAGCCCGATGTTTTTACATACAGTACCTTGATAAAGGCTTGCATTGATAATTTGCAGTTTGAATTAGTTGAGTCTTTGTATGAAGAAATGGCTGCACGGTCAATCACTCCAAACACAGTCACCCAAAACGTAGTCCTGAGTGGATATGGTAAGGCCGGGATGTATGACCAGATGGAAAGAGTGTTGTCAGGAATGCTGGAGGGTGAAAGTTGCAAGCCCGATGTTTGGACAATGAATGTTATCCTTACTATTTTTGGTAACAAGGGTCAGATAGAGATGATGGAGAGATGGTATCAGAAATTCCGTGATTTTGGGATTGAGCCAGAAACTCGTACTTTTAATATTCTGATTAATGCTTATGGGAAGAAGAAATTGTATGATAAAATGTCAACTGTGATGGAATACATGCGCAAGCTTCACTTCCCGTGGACAACCGCAACTTACAATAATGTTATTGAGGCTTTTGCGGATGTGGGAGATGCAAAAAACATGGAGTACACATTTGATCAGATGCGTGCTGAGGACATGAAAGCAGACACCAAAACATTCTGCTGCCTAATAAGAGGGTATGCCAATGCAGGTCTTTTCCATAAGGTGATTAGCAGTGTTCAGTTGGCTGGAAAGTTTGAGATACCTGAAAATACCACGTTTTATAATGCAGTGATATCTGCATGTGCAAAGGCAGATGATTTGATGGAGATGGAGAGAGTTTTTAACCGGATGAAAGAAAAGCAAGTCTCGCCAGATTCCTCGACATATGCCGTCATGGTTGACGCATATAGAAAGGAAGGTATGAACGACAAGATCTACTATTTGGAGCAGGAGATTAGTGCTGATGGTATTCAAACCGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE

Protein Analysis

495

Amino Acids

56.34

Weight (kDa)

7.09

Isoelectric Point (pI)

48.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_3 PF13812 166 - 228 1.5e-09 Pentatricopeptide repeat domain
PPR_1 PF12854 174 - 206 1.2e-07 PPR repeat
PPR_2 PF13041 179 - 225 1.7e-12 PPR repeat family
PPR_2 PF13041 213 - 261 2e-10 PPR repeat family
PPR_3 PF13812 236 - 298 4e-06 Pentatricopeptide repeat domain
PPR_2 PF13041 248 - 293 9.9e-07 PPR repeat family
PPR_2 PF13041 284 - 332 2.5e-08 PPR repeat family
PPR_2 PF13041 356 - 403 6.6e-07 PPR repeat family
PPR_long PF17177 417 - 493 6.6e-06 Pentacotripeptide-repeat region of PRORP
PPR_2 PF13041 425 - 471 2.7e-11 PPR repeat family
PPR_3 PF13812 425 - 471 6.7e-07 Pentatricopeptide repeat domain
PPR PF01535 429 - 456 5.3e-06 PPR repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000143)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G76710 AT1G76710 AT1G76710 AT1G76710
fragaria_vesca FvH4_1g20063 FvH4_2g15231 FvH4_3g04011 FvH4_3g28681 FvH4_4g01411 FvH4_4g10181 FvH4_4g15922 FvH4_4g16651 FvH4_4g16652 FvH4_5g13892 FvH4_5g13893 FvH4_5g20623 FvH4_5g20623 FvH4_5g20623 FvH4_5g20623 FvH4_5g25511 FvH4_6g12551 FvH4_6g12552 FvH4_6g38841 FvH4_7g04391
malus_domestica MD05G1031300.v1.1 MD05G1031400.v1.1 MD05G1031500.v1.1 MD08G1164400.v1.1 MD10G1032900.v1.1 MD10G1033000.v1.1 MD10G1033100.v1.1
prunus_persica Prupe.3G240700_v2.0.a1 Prupe.7G144600_v2.0.a1 Prupe.8G038500_v2.0.a1 Prupe.8G038500_v2.0.a1
pyrus_communis pycom05g02250 pycom05g02260 pycom05g02270 pycom05g02280 pycom08g14160 pycom10g02100 pycom10g02110 pycom10g02130
rosa_chinensis RchiOBHm_Chr1g0329481 RchiOBHm_Chr1g0329491 RchiOBHm_Chr1g0341531 RchiOBHm_Chr3g0464811 RchiOBHm_Chr3g0494701 RchiOBHm_Chr3g0497501 RchiOBHm_Chr4g0385841 RchiOBHm_Chr5g0061181 RchiOBHm_Chr6g0263001 RchiOBHm_Chr7g0193111 RchiOBHm_Chr7g0206281 RchiOBHm_Chr7g0206311
rosa_laevigata RLG00000018908 RLG00000028528 RLG00000028803 RLG00000029882 RLG00000029883 RLG00000030361
rosa_multiflora Rmu_co8196328.1_g000001 Rmu_co8259135.1_g000001 Rmu_co8269185.1_g000001 Rmu_sc0000076.1_g000019 Rmu_sc0000311.1_g000007 Rmu_sc0000429.1_g000038 Rmu_sc0000429.1_g000039 Rmu_sc0000429.1_g000040 Rmu_sc0000511.1_g000005 Rmu_sc0000539.1_g000054 Rmu_sc0000566.1_g000039 Rmu_sc0000805.1_g000032 Rmu_sc0000870.1_g000073 Rmu_sc0000870.1_g000074 Rmu_sc0001010.1_g000018 Rmu_sc0001083.1_g000013 Rmu_sc0001114.1_g000011 Rmu_sc0001702.1_g000027 Rmu_sc0001779.1_g000012 Rmu_sc0002923.1_g000036 Rmu_sc0003242.1_g000011 Rmu_sc0003291.1_g000036 Rmu_sc0003393.1_g000012 Rmu_sc0003872.1_g000016 Rmu_sc0003872.1_g000017 Rmu_sc0003872.1_g000018 Rmu_sc0004084.1_g000020 Rmu_sc0004386.1_g000005 Rmu_sc0004622.1_g000005 Rmu_sc0004742.1_g000021 Rmu_sc0004755.1_g000020 Rmu_sc0004805.1_g000036 Rmu_sc0005065.1_g000006 Rmu_sc0005177.1_g000004 Rmu_sc0006373.1_g000003 Rmu_sc0006373.1_g000004 Rmu_sc0007121.1_g000002 Rmu_sc0007943.1_g000003 Rmu_sc0010368.1_g000006 Rmu_sc0010543.1_g000001 Rmu_sc0012591.1_g000006 Rmu_sc0013504.1_g000009 Rmu_sc0015025.1_g000001 Rmu_sc0016170.1_g000001 Rmu_sc0017156.1_g000001 Rmu_sc0026439.1_g000001
rosa_roxburghii Rroxscaffold_175G00432280 Rroxscaffold_1G00030190 Rroxscaffold_1G00030880 Rroxscaffold_2G00090520 Rroxscaffold_3G00227940 Rroxscaffold_3G00233400 Rroxscaffold_3G00238500 Rroxscaffold_3G00251650 Rroxscaffold_4G00301570 Rroxscaffold_4G00321040 Rroxscaffold_5G00350880 Rroxscaffold_7G00184400
rosa_rugosa Rorug01G0080800 Rorug01G0080900 Rorug01G0193900 Rorug02G0275900 Rorug02G0275900 Rorug02G0275900 Rorug02G0305400 Rorug02G0311800 Rorug02G0350400 Rorug02G0381300 Rorug03G0136700 Rorug03G0181900 Rorug03G0268000 Rorug04G0301600 Rorug05G0175100 Rorug05G0250700 Rorug05G0298200 Rorug05G0596000 Rorug06G0029500 Rorug07G0094300 Rorug07G0094300 Rorug07G0095400 Rorug07G0140100
rosa_samantha Rh1AG099200 Rh1AG190500 Rh1BG078900 Rh1BG079000 Rh1BG079100 Rh1CG084600 Rh1CG084700 Rh1CG095300 Rh1CG175900 Rh1DG103300 Rh1DG150400 Rh2AG079300 Rh2AG272400 Rh2AG464800 Rh2AG507400 Rh2DG078300 Rh2DG078400 Rh3CG206900 Rh3CG295400 Rh3DG206800 Rh3DG356200 Rh4CG071500 Rh4CG179200 Rh4DG064700 Rh5CG362400 Rh7AG212300 Rh7AG226200 Rh7BG222200
rosa_wichuraiana Rw0G009990 Rw0G011260 Rw0G011270 Rw0G012910 Rw0G013740 Rw1G007740 Rw1G013050 Rw1G014230 Rw2G014270 Rw3G012720 Rw3G028110 Rw4G006630 Rw4G015270 Rw4G016160 Rw4G031380 Rw5G011440 Rw5G029180 Rw5G048360 Rw5G048430 Rw5G048780 Rw6G005250 Rw6G006390 Rw7G002840 Rw7G014080 Rw7G019650 Rw7G032790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1287
Acc16I TGCGCA 1 cut(s) 1043
Acc36I ACCTGC 1 cut(s) 1202
AccB7I CCANNNNNTGG 1 cut(s) 318
AccBSI CCGCTC 1 cut(s) 98
AccII CGCG 1 cut(s) 593
AciI CCGC 5 cut(s) 96, 208, 298, 1068, 1100
AcoI YGGCCR 1 cut(s) 472
AcsI RAATTY 2 cut(s) 341, 932
AcuI CTGAAG 1 cut(s) 357
AfaI GTAC 4 cut(s) 545, 658, 967, 1130
AfiI CCNNNNNNNGG 4 cut(s) 207, 318, 431, 858
AflIII ACRYGT 1 cut(s) 591
AgsI TTSAA 4 cut(s) 395, 515, 695, 1478
AjnI CCWGG 1 cut(s) 232
AluBI AGCT 4 cut(s) 155, 292, 563, 1048
AluI AGCT 4 cut(s) 155, 292, 563, 1048
Alw21I GWGCWC 1 cut(s) 164
Alw26I GTCTC 6 cut(s) 22, 28, 34, 40, 239, 1375
AoxI GGCC 4 cut(s) 129, 309, 472, 786
ApeKI GCWGC 3 cut(s) 146, 725, 1185
ApoI RAATTY 2 cut(s) 341, 932
AseI ATTAAT 1 cut(s) 984
Asp700I GAANNNNTTC 1 cut(s) 620
AspLEI GCGC 2 cut(s) 140, 1044
AspS9I GGNCC 1 cut(s) 130
AsuC2I CCSGG 1 cut(s) 790
AsuHPI GGTGA 4 cut(s) 236, 745, 848, 1240
BaeGI GKGCMC 1 cut(s) 490
BalI TGGCCA 1 cut(s) 474
BanII GRGCYC 3 cut(s) 92, 109, 382
BbsI GAAGAC 2 cut(s) 183, 623
Bbv12I GWGCWC 1 cut(s) 164
BbvCI CCTCAGC 2 cut(s) 480, 1152
BbvI GCAGC 3 cut(s) 158, 712, 1172
BccI CCATC 9 cut(s) 260, 362, 799, 907, 915, 1024, 1321, 1327, 1463
BceAI ACGGC 1 cut(s) 1379
BciT130I CCWGG 1 cut(s) 234
BclI TGATCA 1 cut(s) 1138
BcnI CCSGG 1 cut(s) 790
BcoDI GTCTC 6 cut(s) 22, 28, 34, 40, 239, 1375
BfaI CTAG 1 cut(s) 165
BfmI CTRYAG 1 cut(s) 568
BfuAI ACCTGC 1 cut(s) 1202
BglII AGATCT 1 cut(s) 1437
BisI GCNGC 4 cut(s) 147, 209, 726, 1186
BlsI GCNGC 4 cut(s) 148, 210, 727, 1187
Bme1390I CCNGG 2 cut(s) 234, 790
BmgT120I GGNCC 1 cut(s) 130
BmiI GGNNCC 2 cut(s) 374, 449
BmrFI CCNGG 2 cut(s) 234, 790
BmrI ACTGGG 1 cut(s) 484
BmsI GCATC 2 cut(s) 1102, 1134
BmuI ACTGGG 1 cut(s) 484
BpiI GAAGAC 2 cut(s) 183, 623
BpmI CTGGAG 1 cut(s) 851
Bpu10I CCTNAGC 2 cut(s) 480, 1152
BpuEI CTTGAG 2 cut(s) 257, 404
BpuMI CCSGG 1 cut(s) 790
BsaJI CCNNGG 3 cut(s) 232, 312, 1058
BsaWI WCCGGW 1 cut(s) 1350
BsaXI ACNNNNNCTCC 2 cut(s) 908, 938
Bsc4I CCNNNNNNNGG 4 cut(s) 207, 318, 431, 858
Bse118I RCCGGY 1 cut(s) 127
Bse1I ACTGG 2 cut(s) 218, 490
Bse3DI GCAATG 1 cut(s) 374
BseBI CCWGG 1 cut(s) 234
BseDI CCNNGG 3 cut(s) 232, 312, 1058
BseGI GGATG 5 cut(s) 67, 252, 798, 1108, 1359
BseLI CCNNNNNNNGG 4 cut(s) 207, 318, 431, 858
BseMI GCAATG 1 cut(s) 374
BseMII CTCAG 8 cut(s) 33, 39, 45, 209, 494, 641, 761, 1143
BseNI ACTGG 2 cut(s) 218, 490
BseRI GAGGAG 1 cut(s) 169
BseSI GKGCMC 1 cut(s) 490
BseXI GCAGC 3 cut(s) 158, 712, 1172
BsgI GTGCAG 1 cut(s) 711
Bsh1236I CGCG 1 cut(s) 593
BshFI GGCC 4 cut(s) 131, 311, 474, 788
BsiHKAI GWGCWC 1 cut(s) 164
BsiSI CCGG 3 cut(s) 128, 789, 1351
BslFI GGGAC 1 cut(s) 448
BslI CCNNNNNNNGG 4 cut(s) 207, 318, 431, 858
BsmAI GTCTC 6 cut(s) 22, 28, 34, 40, 239, 1375
BsmFI GGGAC 1 cut(s) 448
BsmI GAATGC 1 cut(s) 831
BsnI GGCC 4 cut(s) 131, 311, 474, 788
Bsp1286I GDGCHC 5 cut(s) 92, 109, 164, 382, 490
Bsp1407I TGTACA 1 cut(s) 543
Bsp143I GATC 2 cut(s) 1138, 1437
BspACI CCGC 5 cut(s) 96, 208, 298, 1068, 1100
BspANI GGCC 4 cut(s) 131, 311, 474, 788
BspCNI CTCAG 8 cut(s) 32, 38, 44, 208, 493, 640, 762, 1144
BspFNI CGCG 1 cut(s) 593
BspHI TCATGA 1 cut(s) 586
BspLI GGNNCC 2 cut(s) 374, 449
BspMAI CTGCAG 1 cut(s) 572
BspMI ACCTGC 1 cut(s) 1202
BsrBI CCGCTC 1 cut(s) 98
BsrDI GCAATG 1 cut(s) 374
BsrFI RCCGGY 1 cut(s) 127
BsrGI TGTACA 1 cut(s) 543
BsrI ACTGG 2 cut(s) 218, 490
BssAI RCCGGY 1 cut(s) 127
BssECI CCNNGG 3 cut(s) 232, 312, 1058
BssMI GATC 2 cut(s) 1138, 1437
BssT1I CCWWGG 1 cut(s) 312
Bst2UI CCWGG 1 cut(s) 234
Bst4CI ACNGT 7 cut(s) 331, 468, 543, 656, 732, 751, 1027
Bst6I CTCTTC 2 cut(s) 55, 187
BstAUI TGTACA 1 cut(s) 543
BstC8I GCNNGC 7 cut(s) 129, 486, 635, 673, 848, 1046, 1149
BstDEI CTNAG 9 cut(s) 19, 25, 31, 156, 195, 480, 627, 770, 1152
BstDSI CCRYGG 1 cut(s) 1058
BstF5I GGATG 5 cut(s) 67, 252, 798, 1108, 1359
BstFNI CGCG 1 cut(s) 593
BstHHI GCGC 2 cut(s) 140, 1044
BstKTI GATC 2 cut(s) 1141, 1440
BstMAI GTCTC 6 cut(s) 22, 28, 34, 40, 239, 1375
BstMBI GATC 2 cut(s) 1138, 1437
BstMWI GCNNNNNNNGC 7 cut(s) 104, 137, 146, 152, 217, 406, 1372
BstNI CCWGG 1 cut(s) 234
BstNSI RCATGY 2 cut(s) 1042, 1308
BstSCI CCNGG 2 cut(s) 232, 788
BstSFI CTRYAG 1 cut(s) 568
BstSLI GKGCMC 1 cut(s) 490
BstUI CGCG 1 cut(s) 593
BstV1I GCAGC 3 cut(s) 158, 712, 1172
BstV2I GAAGAC 2 cut(s) 183, 623
BstX2I RGATCY 1 cut(s) 1437
BstYI RGATCY 1 cut(s) 1437
BsuRI GGCC 4 cut(s) 131, 311, 474, 788
BtgI CCRYGG 1 cut(s) 1058
BtsCI GGATG 5 cut(s) 67, 252, 798, 1108, 1359
BtsI GCAGTG 3 cut(s) 133, 1243, 1299
BtsIMutI CAGTG 7 cut(s) 133, 211, 333, 497, 635, 1243, 1299
BveI ACCTGC 1 cut(s) 1202
Cac8I GCNNGC 7 cut(s) 129, 486, 635, 673, 848, 1046, 1149
CciI TCATGA 1 cut(s) 586
CfoI GCGC 2 cut(s) 140, 1044
Cfr10I RCCGGY 1 cut(s) 127
Cfr13I GGNCC 1 cut(s) 130
CseI GACGC 2 cut(s) 599, 1415
Csp6I GTAC 4 cut(s) 544, 657, 966, 1129
CviAII CATG 7 cut(s) 442, 587, 1039, 1123, 1159, 1305, 1399
CviQI GTAC 4 cut(s) 544, 657, 966, 1129
DdeI CTNAG 9 cut(s) 19, 25, 31, 156, 195, 480, 627, 770, 1152
DpnI GATC 2 cut(s) 1140, 1439
DpnII GATC 2 cut(s) 1138, 1437
EaeI YGGCCR 1 cut(s) 472
Eam1104I CTCTTC 2 cut(s) 55, 187
EarI CTCTTC 2 cut(s) 55, 187
Eco130I CCWWGG 1 cut(s) 312
Eco24I GRGCYC 3 cut(s) 92, 109, 382
Eco32I GATATC 1 cut(s) 1299
Eco57I CTGAAG 1 cut(s) 357
EcoRI GAATTC 1 cut(s) 341
EcoRII CCWGG 1 cut(s) 232
EcoRV GATATC 1 cut(s) 1299
EcoT14I CCWWGG 1 cut(s) 312
EcoT38I GRGCYC 3 cut(s) 92, 109, 382
ErhI CCWWGG 1 cut(s) 312
FaeI CATG 7 cut(s) 445, 590, 1042, 1126, 1162, 1308, 1402
FalI AAGNNNNNCTT 2 cut(s) 1037, 1069
FaqI GGGAC 1 cut(s) 448
FatI CATG 7 cut(s) 441, 586, 1038, 1122, 1158, 1304, 1398
FauNDI CATATG 1 cut(s) 1390
FbaI TGATCA 1 cut(s) 1138
Fnu4HI GCNGC 4 cut(s) 147, 209, 726, 1186
FokI GGATG 5 cut(s) 54, 239, 805, 1115, 1366
FriOI GRGCYC 3 cut(s) 92, 109, 382
Fsp4HI GCNGC 4 cut(s) 147, 209, 726, 1186
FspBI CTAG 1 cut(s) 165
FspI TGCGCA 1 cut(s) 1043
GlaI GCGC 2 cut(s) 139, 1043
GluI GCNGC 4 cut(s) 147, 209, 726, 1186
GsuI CTGGAG 1 cut(s) 851
HaeIII GGCC 4 cut(s) 131, 311, 474, 788
HapII CCGG 3 cut(s) 128, 789, 1351
HgaI GACGC 2 cut(s) 599, 1415
HhaI GCGC 2 cut(s) 140, 1044
Hin1II CATG 7 cut(s) 445, 590, 1042, 1126, 1162, 1308, 1402
Hin6I GCGC 2 cut(s) 138, 1042
HinP1I GCGC 2 cut(s) 138, 1042
HincII GTYRAC 4 cut(s) 325, 527, 1023, 1405
HindII GTYRAC 4 cut(s) 325, 527, 1023, 1405
HindIII AAGCTT 2 cut(s) 290, 1046
HinfI GANTC 3 cut(s) 247, 704, 1379
HpaII CCGG 3 cut(s) 128, 789, 1351
HphI GGTGA 4 cut(s) 236, 745, 848, 1240
Hpy166II GTNNAC 7 cut(s) 325, 527, 546, 1023, 1062, 1131, 1405
Hpy188I TCNGA 8 cut(s) 198, 244, 377, 464, 903, 930, 981, 1143
Hpy188III TCNNGA 5 cut(s) 274, 283, 587, 769, 822
Hpy8I GTNNAC 7 cut(s) 325, 527, 546, 1023, 1062, 1131, 1405
Hpy99I CGWCG 1 cut(s) 506
HpyAV CCTTC 5 cut(s) 55, 425, 461, 512, 1415
HpyCH4III ACNGT 7 cut(s) 331, 468, 543, 656, 732, 751, 1027
HpyCH4IV ACGT 3 cut(s) 620, 762, 1280
HpyF10VI GCNNNNNNNGC 7 cut(s) 104, 137, 146, 152, 217, 406, 1372
HpyF3I CTNAG 9 cut(s) 19, 25, 31, 156, 195, 480, 627, 770, 1152
HpySE526I ACGT 3 cut(s) 620, 762, 1280
Hsp92II CATG 7 cut(s) 445, 590, 1042, 1126, 1162, 1308, 1402
HspAI GCGC 2 cut(s) 138, 1042
KroI GCCGGC 1 cut(s) 127
KroNI GCCGGC 1 cut(s) 129
Ksp22I TGATCA 1 cut(s) 1138
Kzo9I GATC 2 cut(s) 1138, 1437
LmnI GCTCC 4 cut(s) 378, 453, 573, 1450
Lsp1109I GCAGC 3 cut(s) 158, 712, 1172
LweI GCATC 2 cut(s) 1102, 1134
MaeI CTAG 1 cut(s) 165
MaeII ACGT 3 cut(s) 620, 762, 1280
MaeIII GTNAC 4 cut(s) 331, 347, 751, 890
MalI GATC 2 cut(s) 1140, 1439
MbiI CCGCTC 1 cut(s) 98
MboI GATC 2 cut(s) 1138, 1437
MflI RGATCY 1 cut(s) 1437
MhlI GDGCHC 5 cut(s) 92, 109, 164, 382, 490
MlsI TGGCCA 1 cut(s) 474
MluCI AATT 5 cut(s) 341, 682, 695, 932, 1004
MluI ACGCGT 1 cut(s) 591
MluNI TGGCCA 1 cut(s) 474
MlyI GAGTC 2 cut(s) 241, 713
Mox20I TGGCCA 1 cut(s) 474
MroNI GCCGGC 1 cut(s) 127
MroXI GAANNNNTTC 1 cut(s) 620
MscI TGGCCA 1 cut(s) 474
MseI TTAA 6 cut(s) 123, 402, 606, 972, 984, 1347
Msp20I TGGCCA 1 cut(s) 474
MspI CCGG 3 cut(s) 128, 789, 1351
MspR9I CCNGG 2 cut(s) 234, 790
Mva1269I GAATGC 1 cut(s) 831
MvaI CCWGG 1 cut(s) 234
MvnI CGCG 1 cut(s) 593
MwoI GCNNNNNNNGC 7 cut(s) 104, 137, 146, 152, 217, 406, 1372
NaeI GCCGGC 1 cut(s) 129
NciI CCSGG 1 cut(s) 790
NdeI CATATG 1 cut(s) 1390
NdeII GATC 2 cut(s) 1138, 1437
NgoMIV GCCGGC 1 cut(s) 127
NlaIII CATG 7 cut(s) 445, 590, 1042, 1126, 1162, 1308, 1402
NlaIV GGNNCC 2 cut(s) 374, 449
NmuCI GTSAC 3 cut(s) 331, 347, 751
NsbI TGCGCA 1 cut(s) 1043
NspI RCATGY 2 cut(s) 1042, 1308
PagI TCATGA 1 cut(s) 586
PctI GAATGC 1 cut(s) 831
PdiI GCCGGC 1 cut(s) 129
PdmI GAANNNNTTC 1 cut(s) 620
PfeI GAWTC 1 cut(s) 1379
PflMI CCANNNNNTGG 1 cut(s) 318
PkrI GCNGC 4 cut(s) 148, 210, 727, 1187
PleI GAGTC 2 cut(s) 241, 712
PpsI GAGTC 2 cut(s) 241, 712
PshBI ATTAAT 1 cut(s) 984
PsiI TTATAA 1 cut(s) 1287
Psp6I CCWGG 1 cut(s) 232
PspGI CCWGG 1 cut(s) 232
PspN4I GGNNCC 2 cut(s) 374, 449
PspPI GGNCC 1 cut(s) 130
PstI CTGCAG 1 cut(s) 572
PsuI RGATCY 1 cut(s) 1437
RsaI GTAC 4 cut(s) 545, 658, 967, 1130
RsaNI GTAC 4 cut(s) 544, 657, 966, 1129
SaqAI TTAA 6 cut(s) 123, 402, 606, 972, 984, 1347
SatI GCNGC 4 cut(s) 147, 209, 726, 1186
Sau3AI GATC 2 cut(s) 1138, 1437
Sau96I GGNCC 1 cut(s) 130
SchI GAGTC 2 cut(s) 241, 713
ScrFI CCNGG 2 cut(s) 234, 790
SduI GDGCHC 5 cut(s) 92, 109, 164, 382, 490
SfaNI GCATC 2 cut(s) 1102, 1134
SfcI CTRYAG 1 cut(s) 568
SmlI CTYRAG 2 cut(s) 272, 383
SmoI CTYRAG 2 cut(s) 272, 383
Sse9I AATT 5 cut(s) 341, 682, 695, 932, 1004
SsiI CCGC 5 cut(s) 96, 208, 298, 1068, 1100
SspI AATATT 1 cut(s) 976
SspMI CTAG 1 cut(s) 165
StyD4I CCNGG 2 cut(s) 232, 788
StyI CCWWGG 1 cut(s) 312
TaaI ACNGT 7 cut(s) 331, 468, 543, 656, 732, 751, 1027
TaiI ACGT 3 cut(s) 623, 765, 1283
TaqI TCGA 3 cut(s) 357, 501, 1385
TasI AATT 5 cut(s) 341, 682, 695, 932, 1004
TatI WGTACW 2 cut(s) 543, 1128
TauI GCSGC 1 cut(s) 211
TfiI GAWTC 1 cut(s) 1379
Tru1I TTAA 6 cut(s) 123, 402, 606, 972, 984, 1347
Tru9I TTAA 6 cut(s) 123, 402, 606, 972, 984, 1347
TscAI CASTG 7 cut(s) 140, 218, 340, 497, 635, 1243, 1299
TseFI GTSAC 3 cut(s) 331, 347, 751
TseI GCWGC 3 cut(s) 146, 725, 1185
Tsp45I GTSAC 3 cut(s) 331, 347, 751
TspDTI ATGAA 7 cut(s) 575, 629, 729, 881, 1175, 1370, 1442
TspGWI ACGGA 1 cut(s) 926
TspRI CASTG 7 cut(s) 140, 218, 340, 497, 635, 1243, 1299
Van91I CCANNNNNTGG 1 cut(s) 318
VspI ATTAAT 1 cut(s) 984
XapI RAATTY 2 cut(s) 341, 932
XceI RCATGY 2 cut(s) 1042, 1308
XmnI GAANNNNTTC 1 cut(s) 620
XspI CTAG 1 cut(s) 165
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.