Rh4DG064700

protein FAR1-RELATED SEQUENCE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0000143
Physical Location & Seq
Reverse (-)
9748849 .. 9749872
1024 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG064700.1

Sequence Viewer

Length: 828 bp
ATGAAGACAAAGAAACGACCATCCAAAGTGGGAGAACATATCGGTCCTTCACTAATTCCCACTGGCAATTTTATGGGTTTAAGAACGCCACCAAGGAAGTTAGATAAGCGAGCACCAAAATTAGCACAAGAGACTAGGGTAACTGCAAAAAAAGCTAAATTGCAGTTGAATCTACGTCAAGATGTGAATCCATCTGAATTGACACATGAGTATAATGACTGGTTTCCTCAAGAAATGTGGCCATTTTTTTTAGGAGTCAAGGATGTAAAGGATGACGGTAATTGTGGTTTTAGAGCTATAGCTGAGTTTATGGGATATGGTGAGAATAACTGGCGCCGTGTACGCAAGGAGTTGTTGCAAGAGTTTCATCGGAATAAGCATGCATACCGATTACTATTCCGATATGCTGAGCGACTGGAGGAGGTGGAGAGGAGATTAGATTATTTTGATGACTTTCCGCCTGAAGAACATTGGTTCTTAATACCAGATATGGGATACATTGTCGCAAATTGTTACACTGTTGTGCTGATGCATTTTGGATTGCCTTTGATGTCTTGTTTTACCTTCTTGCCAATGGACAGTGTCCCACTTCCTATAGTTAATCGTCGTGAAATTTCAATTGGTTTTGTCAAACGATGTCACTTTGTCCAGGTTCATTTGAGGCCATTGCATCCTATGCCACCTGTTATCAATTGTTGGTTTAGATACTCTCTACCTCATGCAAGTGGATGGTTAACTCCCTATAGTGATCGTCTTCACAATGGCAGAGATATTTTTTGTTCAGATTATTCAGACAACGAAAAAATTTATCATCTTGATAGTGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AFT FAR1 MULE

Protein Analysis

275

Amino Acids

32.56

Weight (kDa)

8.81

Isoelectric Point (pI)

49.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000143)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G76710 AT1G76710 AT1G76710 AT1G76710
fragaria_vesca FvH4_1g20063 FvH4_2g15231 FvH4_3g04011 FvH4_3g28681 FvH4_4g01411 FvH4_4g10181 FvH4_4g15922 FvH4_4g16651 FvH4_4g16652 FvH4_5g13892 FvH4_5g13893 FvH4_5g20623 FvH4_5g20623 FvH4_5g20623 FvH4_5g20623 FvH4_5g25511 FvH4_6g12551 FvH4_6g12552 FvH4_6g38841 FvH4_7g04391
malus_domestica MD05G1031300.v1.1 MD05G1031400.v1.1 MD05G1031500.v1.1 MD08G1164400.v1.1 MD10G1032900.v1.1 MD10G1033000.v1.1 MD10G1033100.v1.1
prunus_persica Prupe.3G240700_v2.0.a1 Prupe.7G144600_v2.0.a1 Prupe.8G038500_v2.0.a1 Prupe.8G038500_v2.0.a1
pyrus_communis pycom05g02250 pycom05g02260 pycom05g02270 pycom05g02280 pycom08g14160 pycom10g02100 pycom10g02110 pycom10g02130
rosa_chinensis RchiOBHm_Chr1g0329481 RchiOBHm_Chr1g0329491 RchiOBHm_Chr1g0341531 RchiOBHm_Chr3g0464811 RchiOBHm_Chr3g0494701 RchiOBHm_Chr3g0497501 RchiOBHm_Chr4g0385841 RchiOBHm_Chr5g0061181 RchiOBHm_Chr6g0263001 RchiOBHm_Chr7g0193111 RchiOBHm_Chr7g0206281 RchiOBHm_Chr7g0206311
rosa_laevigata RLG00000018908 RLG00000028528 RLG00000028803 RLG00000029882 RLG00000029883 RLG00000030361
rosa_multiflora Rmu_co8196328.1_g000001 Rmu_co8259135.1_g000001 Rmu_co8269185.1_g000001 Rmu_sc0000076.1_g000019 Rmu_sc0000311.1_g000007 Rmu_sc0000429.1_g000038 Rmu_sc0000429.1_g000039 Rmu_sc0000429.1_g000040 Rmu_sc0000511.1_g000005 Rmu_sc0000539.1_g000054 Rmu_sc0000566.1_g000039 Rmu_sc0000805.1_g000032 Rmu_sc0000870.1_g000073 Rmu_sc0000870.1_g000074 Rmu_sc0001010.1_g000018 Rmu_sc0001083.1_g000013 Rmu_sc0001114.1_g000011 Rmu_sc0001702.1_g000027 Rmu_sc0001779.1_g000012 Rmu_sc0002923.1_g000036 Rmu_sc0003242.1_g000011 Rmu_sc0003291.1_g000036 Rmu_sc0003393.1_g000012 Rmu_sc0003872.1_g000016 Rmu_sc0003872.1_g000017 Rmu_sc0003872.1_g000018 Rmu_sc0004084.1_g000020 Rmu_sc0004386.1_g000005 Rmu_sc0004622.1_g000005 Rmu_sc0004742.1_g000021 Rmu_sc0004755.1_g000020 Rmu_sc0004805.1_g000036 Rmu_sc0005065.1_g000006 Rmu_sc0005177.1_g000004 Rmu_sc0006373.1_g000003 Rmu_sc0006373.1_g000004 Rmu_sc0007121.1_g000002 Rmu_sc0007943.1_g000003 Rmu_sc0010368.1_g000006 Rmu_sc0010543.1_g000001 Rmu_sc0012591.1_g000006 Rmu_sc0013504.1_g000009 Rmu_sc0015025.1_g000001 Rmu_sc0016170.1_g000001 Rmu_sc0017156.1_g000001 Rmu_sc0026439.1_g000001
rosa_roxburghii Rroxscaffold_175G00432280 Rroxscaffold_1G00030190 Rroxscaffold_1G00030880 Rroxscaffold_2G00090520 Rroxscaffold_3G00227940 Rroxscaffold_3G00233400 Rroxscaffold_3G00238500 Rroxscaffold_3G00251650 Rroxscaffold_4G00301570 Rroxscaffold_4G00321040 Rroxscaffold_5G00350880 Rroxscaffold_7G00184400
rosa_rugosa Rorug01G0080800 Rorug01G0080900 Rorug01G0193900 Rorug02G0275900 Rorug02G0275900 Rorug02G0275900 Rorug02G0305400 Rorug02G0311800 Rorug02G0350400 Rorug02G0381300 Rorug03G0136700 Rorug03G0181900 Rorug03G0268000 Rorug04G0301600 Rorug05G0175100 Rorug05G0250700 Rorug05G0298200 Rorug05G0596000 Rorug06G0029500 Rorug07G0094300 Rorug07G0094300 Rorug07G0095400 Rorug07G0140100
rosa_samantha Rh1AG099200 Rh1AG190500 Rh1BG078900 Rh1BG079000 Rh1BG079100 Rh1CG084600 Rh1CG084700 Rh1CG095300 Rh1CG175900 Rh1DG103300 Rh1DG150400 Rh2AG079300 Rh2AG272400 Rh2AG464800 Rh2AG507400 Rh2DG078300 Rh2DG078400 Rh3CG206900 Rh3CG295400 Rh3DG206800 Rh3DG356200 Rh4CG071500 Rh4CG179200 Rh4DG064700 Rh5CG362400 Rh7AG212300 Rh7AG226200 Rh7BG222200
rosa_wichuraiana Rw0G009990 Rw0G011260 Rw0G011270 Rw0G012910 Rw0G013740 Rw1G007740 Rw1G013050 Rw1G014230 Rw2G014270 Rw3G012720 Rw3G028110 Rw4G006630 Rw4G015270 Rw4G016160 Rw4G031380 Rw5G011440 Rw5G029180 Rw5G048360 Rw5G048430 Rw5G048780 Rw6G005250 Rw6G006390 Rw7G002840 Rw7G014080 Rw7G019650 Rw7G032790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 333
AciI CCGC 1 cut(s) 458
AcoI YGGCCR 1 cut(s) 239
AcsI RAATTY 2 cut(s) 612, 804
AcuI CTGAAG 1 cut(s) 483
AcyI GRCGYC 1 cut(s) 334
AfaI GTAC 1 cut(s) 342
AfiI CCNNNNNNNGG 1 cut(s) 491
AgsI TTSAA 2 cut(s) 169, 618
AjnI CCWGG 1 cut(s) 648
AjuI GAANNNNNNNTTGG 2 cut(s) 603, 635
AleI CACNNNNGTG 1 cut(s) 521
AluBI AGCT 3 cut(s) 155, 296, 302
AluI AGCT 3 cut(s) 155, 296, 302
Alw21I GWGCWC 1 cut(s) 115
Alw26I GTCTC 1 cut(s) 125
AoxI GGCC 2 cut(s) 239, 662
ApoI RAATTY 2 cut(s) 612, 804
AspLEI GCGC 1 cut(s) 336
AspS9I GGNCC 1 cut(s) 44
AsuHPI GGTGA 1 cut(s) 332
AvaII GGWCC 1 cut(s) 44
BalI TGGCCA 1 cut(s) 241
BanI GGYRCC 1 cut(s) 333
BbsI GAAGAC 2 cut(s) 11, 746
Bbv12I GWGCWC 1 cut(s) 115
BccI CCATC 3 cut(s) 28, 199, 723
BceAI ACGGC 1 cut(s) 321
BciT130I CCWGG 1 cut(s) 650
BciVI GTATCC 1 cut(s) 488
BcoDI GTCTC 1 cut(s) 125
BfaI CTAG 1 cut(s) 135
BfmI CTRYAG 3 cut(s) 297, 594, 742
BfoI RGCGCY 1 cut(s) 337
BfuI GTATCC 1 cut(s) 488
BlpI GCTNAGC 1 cut(s) 408
Bme1390I CCNGG 1 cut(s) 650
Bme18I GGWCC 1 cut(s) 44
BmgT120I GGNCC 1 cut(s) 44
BmiI GGNNCC 1 cut(s) 335
BmrFI CCNGG 1 cut(s) 650
BmsI GCATC 2 cut(s) 519, 679
BpiI GAAGAC 2 cut(s) 11, 746
BpmI CTGGAG 1 cut(s) 437
Bpu1102I GCTNAGC 1 cut(s) 408
BpuEI CTTGAG 1 cut(s) 213
BsaBI GATNNNNATC 1 cut(s) 186
BsaHI GRCGYC 1 cut(s) 334
BsaJI CCNNGG 1 cut(s) 92
Bsc4I CCNNNNNNNGG 1 cut(s) 491
Bse1I ACTGG 4 cut(s) 67, 224, 335, 420
Bse3DI GCAATG 1 cut(s) 665
Bse8I GATNNNNATC 1 cut(s) 186
BseBI CCWGG 1 cut(s) 650
BseDI CCNNGG 1 cut(s) 92
BseGI GGATG 5 cut(s) 20, 268, 277, 670, 734
BseJI GATNNNNATC 1 cut(s) 186
BseLI CCNNNNNNNGG 1 cut(s) 491
BseMI GCAATG 1 cut(s) 665
BseMII CTCAG 2 cut(s) 294, 399
BseNI ACTGG 4 cut(s) 67, 224, 335, 420
BseRI GAGGAG 2 cut(s) 434, 445
BshFI GGCC 2 cut(s) 241, 664
BshNI GGYRCC 1 cut(s) 333
BsiHKAI GWGCWC 1 cut(s) 115
BslFI GGGAC 1 cut(s) 569
BslI CCNNNNNNNGG 1 cut(s) 491
BsmAI GTCTC 1 cut(s) 125
BsmFI GGGAC 1 cut(s) 569
BsnI GGCC 2 cut(s) 241, 664
Bsp1286I GDGCHC 1 cut(s) 115
Bsp143I GATC 1 cut(s) 748
Bsp1720I GCTNAGC 1 cut(s) 408
BspACI CCGC 1 cut(s) 458
BspANI GGCC 2 cut(s) 241, 664
BspCNI CTCAG 2 cut(s) 295, 400
BspLI GGNNCC 1 cut(s) 335
BspT107I GGYRCC 1 cut(s) 333
BsrDI GCAATG 1 cut(s) 665
BsrI ACTGG 4 cut(s) 67, 224, 335, 420
BssECI CCNNGG 1 cut(s) 92
BssMI GATC 1 cut(s) 748
BssNI GRCGYC 1 cut(s) 334
BssT1I CCWWGG 1 cut(s) 92
Bst2UI CCWGG 1 cut(s) 650
Bst4CI ACNGT 3 cut(s) 278, 520, 581
BstACI GRCGYC 1 cut(s) 334
BstAPI GCANNNNNTGC 1 cut(s) 676
BstC8I GCNNGC 2 cut(s) 111, 381
BstDEI CTNAG 2 cut(s) 303, 408
BstF5I GGATG 5 cut(s) 20, 268, 277, 670, 734
BstH2I RGCGCY 1 cut(s) 337
BstHHI GCGC 1 cut(s) 336
BstKTI GATC 1 cut(s) 751
BstMAI GTCTC 1 cut(s) 125
BstMBI GATC 1 cut(s) 748
BstMWI GCNNNNNNNGC 3 cut(s) 152, 342, 676
BstNI CCWGG 1 cut(s) 650
BstNSI RCATGY 1 cut(s) 383
BstSCI CCNGG 1 cut(s) 648
BstSFI CTRYAG 3 cut(s) 297, 594, 742
BstV2I GAAGAC 2 cut(s) 11, 746
BsuI GTATCC 1 cut(s) 488
BsuRI GGCC 2 cut(s) 241, 664
BtsCI GGATG 5 cut(s) 20, 268, 277, 670, 734
BtsIMutI CAGTG 3 cut(s) 60, 516, 586
Cac8I GCNNGC 2 cut(s) 111, 381
CfoI GCGC 1 cut(s) 336
Cfr13I GGNCC 1 cut(s) 44
Csp6I GTAC 1 cut(s) 341
CspCI CAANNNNNGTGG 2 cut(s) 218, 253
CviAII CATG 3 cut(s) 206, 380, 719
CviJI RGCY 5 cut(s) 155, 241, 296, 302, 664
CviKI_1 RGCY 5 cut(s) 155, 241, 296, 302, 664
CviQI GTAC 1 cut(s) 341
DdeI CTNAG 2 cut(s) 303, 408
DinI GGCGCC 1 cut(s) 335
DpnI GATC 1 cut(s) 750
DpnII GATC 1 cut(s) 748
EaeI YGGCCR 1 cut(s) 239
EciI GGCGGA 1 cut(s) 447
Eco130I CCWWGG 1 cut(s) 92
Eco47I GGWCC 1 cut(s) 44
Eco57I CTGAAG 1 cut(s) 483
EcoRII CCWGG 1 cut(s) 648
EcoT14I CCWWGG 1 cut(s) 92
EcoT22I ATGCAT 2 cut(s) 385, 534
EgeI GGCGCC 1 cut(s) 335
EheI GGCGCC 1 cut(s) 335
ErhI CCWWGG 1 cut(s) 92
FaeI CATG 3 cut(s) 209, 383, 722
FaqI GGGAC 1 cut(s) 569
FatI CATG 3 cut(s) 205, 379, 718
FokI GGATG 5 cut(s) 7, 275, 284, 657, 741
FspBI CTAG 1 cut(s) 135
GlaI GCGC 1 cut(s) 335
GsuI CTGGAG 1 cut(s) 437
HaeII RGCGCY 1 cut(s) 337
HaeIII GGCC 2 cut(s) 241, 664
HhaI GCGC 1 cut(s) 336
Hin1I GRCGYC 1 cut(s) 334
Hin1II CATG 3 cut(s) 209, 383, 722
Hin6I GCGC 1 cut(s) 334
HinP1I GCGC 1 cut(s) 334
HincII GTYRAC 1 cut(s) 735
HindII GTYRAC 1 cut(s) 735
HinfI GANTC 3 cut(s) 169, 187, 255
HpaI GTTAAC 1 cut(s) 735
HphI GGTGA 1 cut(s) 332
Hpy166II GTNNAC 2 cut(s) 341, 735
Hpy188I TCNGA 5 cut(s) 196, 372, 401, 784, 793
Hpy188III TCNNGA 4 cut(s) 179, 230, 608, 815
Hpy8I GTNNAC 2 cut(s) 341, 735
Hpy99I CGWCG 1 cut(s) 609
HpyAV CCTTC 2 cut(s) 57, 574
HpyCH4III ACNGT 3 cut(s) 278, 520, 581
HpyCH4IV ACGT 1 cut(s) 175
HpyCH4V TGCA 7 cut(s) 146, 163, 358, 383, 532, 670, 722
HpyF10VI GCNNNNNNNGC 3 cut(s) 152, 342, 676
HpyF3I CTNAG 2 cut(s) 303, 408
HpySE526I ACGT 1 cut(s) 175
Hsp92I GRCGYC 1 cut(s) 334
Hsp92II CATG 3 cut(s) 209, 383, 722
HspAI GCGC 1 cut(s) 334
KasI GGCGCC 1 cut(s) 333
KspAI GTTAAC 1 cut(s) 735
Kzo9I GATC 1 cut(s) 748
LpnPI CCDG 9 cut(s) 48, 205, 316, 401, 474, 498, 635, 662, 696
LweI GCATC 2 cut(s) 519, 679
MaeI CTAG 1 cut(s) 135
MaeII ACGT 1 cut(s) 175
MaeIII GTNAC 3 cut(s) 139, 512, 638
MalI GATC 1 cut(s) 750
MboI GATC 1 cut(s) 748
MboII GAAGA 3 cut(s) 16, 476, 746
MfeI CAATTG 2 cut(s) 618, 691
MhlI GDGCHC 1 cut(s) 115
MlsI TGGCCA 1 cut(s) 241
MluNI TGGCCA 1 cut(s) 241
Mly113I GGCGCC 1 cut(s) 334
MlyI GAGTC 1 cut(s) 264
MnlI CCTC 6 cut(s) 237, 412, 415, 423, 654, 726
Mox20I TGGCCA 1 cut(s) 241
Mph1103I ATGCAT 2 cut(s) 385, 534
MscI TGGCCA 1 cut(s) 241
MseI TTAA 4 cut(s) 80, 479, 600, 734
MslI CAYNNNNRTG 2 cut(s) 521, 723
Msp20I TGGCCA 1 cut(s) 241
MspR9I CCNGG 1 cut(s) 650
MunI CAATTG 2 cut(s) 618, 691
MvaI CCWGG 1 cut(s) 650
MwoI GCNNNNNNNGC 3 cut(s) 152, 342, 676
NarI GGCGCC 1 cut(s) 334
NdeII GATC 1 cut(s) 748
NlaIII CATG 3 cut(s) 209, 383, 722
NlaIV GGNNCC 1 cut(s) 335
NmuCI GTSAC 1 cut(s) 638
NsiI ATGCAT 2 cut(s) 385, 534
NspI RCATGY 1 cut(s) 383
OliI CACNNNNGTG 1 cut(s) 521
PaeI GCATGC 1 cut(s) 383
PfeI GAWTC 2 cut(s) 169, 187
PflFI GACNNNGTC 1 cut(s) 581
PleI GAGTC 1 cut(s) 263
PluTI GGCGCC 1 cut(s) 337
PpsI GAGTC 1 cut(s) 263
Psp6I CCWGG 1 cut(s) 648
PspGI CCWGG 1 cut(s) 648
PspN4I GGNNCC 1 cut(s) 335
PspPI GGNCC 1 cut(s) 44
PsyI GACNNNGTC 1 cut(s) 581
RsaI GTAC 1 cut(s) 342
RsaNI GTAC 1 cut(s) 341
RseI CAYNNNNRTG 2 cut(s) 521, 723
SaqAI TTAA 4 cut(s) 80, 479, 600, 734
Sau3AI GATC 1 cut(s) 748
Sau96I GGNCC 1 cut(s) 44
SchI GAGTC 1 cut(s) 264
ScrFI CCNGG 1 cut(s) 650
SduI GDGCHC 1 cut(s) 115
SetI ASST 9 cut(s) 157, 178, 298, 304, 426, 566, 654, 685, 718
SfaNI GCATC 2 cut(s) 519, 679
SfcI CTRYAG 3 cut(s) 297, 594, 742
SfoI GGCGCC 1 cut(s) 335
SinI GGWCC 1 cut(s) 44
SmiMI CAYNNNNRTG 2 cut(s) 521, 723
SmlI CTYRAG 1 cut(s) 228
SmoI CTYRAG 1 cut(s) 228
SphI GCATGC 1 cut(s) 383
SsiI CCGC 1 cut(s) 458
SspDI GGCGCC 1 cut(s) 333
SspMI CTAG 1 cut(s) 135
StyD4I CCNGG 1 cut(s) 648
StyI CCWWGG 1 cut(s) 92
TaaI ACNGT 3 cut(s) 278, 520, 581
TaiI ACGT 1 cut(s) 178
TaqII GACCGA 1 cut(s) 32
TfiI GAWTC 2 cut(s) 169, 187
Tru1I TTAA 4 cut(s) 80, 479, 600, 734
Tru9I TTAA 4 cut(s) 80, 479, 600, 734
TscAI CASTG 3 cut(s) 67, 523, 586
TseFI GTSAC 1 cut(s) 638
Tsp45I GTSAC 1 cut(s) 638
TspDTI ATGAA 3 cut(s) 17, 356, 644
TspRI CASTG 3 cut(s) 67, 523, 586
Tth111I GACNNNGTC 1 cut(s) 581
VpaK11BI GGWCC 1 cut(s) 44
XapI RAATTY 2 cut(s) 612, 804
XceI RCATGY 1 cut(s) 383
XspI CTAG 1 cut(s) 135
Zsp2I ATGCAT 2 cut(s) 385, 534
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.