isoform X1
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 557 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 940 |
| Acc16I | TGCGCA | 1 cut(s) | 3030 |
| Acc36I | ACCTGC | 1 cut(s) | 2991 |
| Acc65I | GGTACC | 2 cut(s) | 1596, 2979 |
| AccB1I | GGYRCC | 3 cut(s) | 1482, 1596, 2979 |
| AccI | GTMKAC | 3 cut(s) | 2398, 3253, 3389 |
| AccII | CGCG | 2 cut(s) | 61, 106 |
| AciI | CCGC | 7 cut(s) | 104, 106, 161, 282, 1197, 2934, 3218 |
| AclWI | GGATC | 3 cut(s) | 200, 1965, 3353 |
| AcoI | YGGCCR | 1 cut(s) | 2441 |
| AcsI | RAATTY | 6 cut(s) | 830, 908, 1979, 2155, 2270, 2791 |
| AcuI | CTGAAG | 1 cut(s) | 2250 |
| AcyI | GRCGYC | 2 cut(s) | 1626, 3250 |
| AdeI | CACNNNGTG | 2 cut(s) | 29, 1528 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 2657, 3143 |
| AflII | CTTAAG | 2 cut(s) | 2126, 3304 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 2660 |
| AhlI | ACTAGT | 2 cut(s) | 2636, 3392 |
| AjiI | CACGTC | 1 cut(s) | 1106 |
| AjnI | CCWGG | 4 cut(s) | 265, 2021, 2148, 2650 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 603, 635 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 687, 719 |
| Alw21I | GWGCWC | 2 cut(s) | 1328, 3112 |
| Alw26I | GTCTC | 5 cut(s) | 482, 578, 759, 1262, 1425 |
| AlwI | GGATC | 3 cut(s) | 200, 1965, 3353 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 2951 |
| Ama87I | CYCGRG | 2 cut(s) | 783, 861 |
| AoxI | GGCC | 3 cut(s) | 2441, 2888, 3308 |
| ApeKI | GCWGC | 5 cut(s) | 67, 708, 1091, 3051, 3365 |
| ApoI | RAATTY | 6 cut(s) | 830, 908, 1979, 2155, 2270, 2791 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 662, 694, 3405, 3437 |
| AseI | ATTAAT | 1 cut(s) | 1839 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 2033 |
| Asp718I | GGTACC | 2 cut(s) | 1596, 2979 |
| AspLEI | GCGC | 4 cut(s) | 61, 1522, 2774, 3031 |
| AspS9I | GGNCC | 2 cut(s) | 2719, 2889 |
| AsuC2I | CCSGG | 1 cut(s) | 3312 |
| AsuHPI | GGTGA | 2 cut(s) | 2757, 2981 |
| AvaI | CYCGRG | 2 cut(s) | 783, 861 |
| AvaII | GGWCC | 1 cut(s) | 2719 |
| BaeGI | GKGCMC | 2 cut(s) | 1487, 2410 |
| BanI | GGYRCC | 3 cut(s) | 1482, 1596, 2979 |
| BanII | GRGCYC | 1 cut(s) | 961 |
| BauI | CACGAG | 3 cut(s) | 756, 960, 2411 |
| BbsI | GAAGAC | 3 cut(s) | 151, 2256, 3009 |
| Bbv12I | GWGCWC | 2 cut(s) | 1328, 3112 |
| BbvI | GCAGC | 5 cut(s) | 54, 695, 1078, 3063, 3352 |
| BccI | CCATC | 6 cut(s) | 1170, 1226, 2348, 2918, 3117, 3369 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 839, 873, 941, 975 |
| BciT130I | CCWGG | 4 cut(s) | 267, 2023, 2150, 2652 |
| BciVI | GTATCC | 2 cut(s) | 1236, 2172 |
| BclI | TGATCA | 3 cut(s) | 2070, 2782, 3430 |
| BcnI | CCSGG | 1 cut(s) | 3312 |
| BcoDI | GTCTC | 5 cut(s) | 482, 578, 759, 1262, 1425 |
| BcuI | ACTAGT | 2 cut(s) | 2636, 3392 |
| BfmI | CTRYAG | 2 cut(s) | 1806, 1935 |
| BfrI | CTTAAG | 2 cut(s) | 2126, 3304 |
| BfuAI | ACCTGC | 1 cut(s) | 2991 |
| BfuI | GTATCC | 2 cut(s) | 1236, 2172 |
| BglII | AGATCT | 1 cut(s) | 452 |
| BisI | GCNGC | 6 cut(s) | 68, 104, 709, 1092, 3052, 3366 |
| BlsI | GCNGC | 6 cut(s) | 69, 105, 710, 1093, 3053, 3367 |
| BmcAI | AGTACT | 1 cut(s) | 413 |
| Bme1390I | CCNGG | 5 cut(s) | 267, 2023, 2150, 2652, 3312 |
| Bme18I | GGWCC | 1 cut(s) | 2719 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 2660 |
| BmeT110I | CYCGRG | 2 cut(s) | 783, 861 |
| BmgBI | CACGTC | 1 cut(s) | 1106 |
| BmgT120I | GGNCC | 2 cut(s) | 2719, 2889 |
| BmiI | GGNNCC | 4 cut(s) | 1484, 1598, 2721, 2981 |
| BmrFI | CCNGG | 5 cut(s) | 267, 2023, 2150, 2652, 3312 |
| BoxI | GACNNNNGTC | 1 cut(s) | 3144 |
| BpiI | GAAGAC | 3 cut(s) | 151, 2256, 3009 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 2491, 2523 |
| BpmI | CTGGAG | 1 cut(s) | 2588 |
| Bpu10I | CCTNAGC | 4 cut(s) | 699, 1322, 2508, 2597 |
| BpuEI | CTTGAG | 1 cut(s) | 2474 |
| BpuMI | CCSGG | 1 cut(s) | 3312 |
| BsaAI | YACGTR | 2 cut(s) | 1547, 1581 |
| BsaHI | GRCGYC | 2 cut(s) | 1626, 3250 |
| BsaI | GGTCTC | 2 cut(s) | 482, 1425 |
| BsaJI | CCNNGG | 9 cut(s) | 104, 266, 472, 1881, 2149, 2392, 2820, 3245, 3311 |
| BsaWI | WCCGGW | 2 cut(s) | 92, 2832 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 687, 717, 2303, 2333 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 2657, 3143 |
| Bse1I | ACTGG | 1 cut(s) | 3233 |
| Bse3DI | GCAATG | 3 cut(s) | 271, 2781, 3330 |
| BseBI | CCWGG | 4 cut(s) | 267, 2023, 2150, 2652 |
| BseDI | CCNNGG | 9 cut(s) | 104, 266, 472, 1881, 2149, 2392, 2820, 3245, 3311 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 2657, 3143 |
| BseMI | GCAATG | 3 cut(s) | 271, 2781, 3330 |
| BseNI | ACTGG | 1 cut(s) | 3233 |
| BseRI | GAGGAG | 1 cut(s) | 2301 |
| BseSI | GKGCMC | 2 cut(s) | 1487, 2410 |
| BseXI | GCAGC | 5 cut(s) | 54, 695, 1078, 3063, 3352 |
| BseYI | CCCAGC | 1 cut(s) | 968 |
| BsgI | GTGCAG | 2 cut(s) | 1523, 3351 |
| Bsh1236I | CGCG | 2 cut(s) | 61, 106 |
| BshFI | GGCC | 3 cut(s) | 2443, 2890, 3310 |
| BshNI | GGYRCC | 3 cut(s) | 1482, 1596, 2979 |
| BsiHKAI | GWGCWC | 2 cut(s) | 1328, 3112 |
| BsiHKCI | CYCGRG | 2 cut(s) | 783, 861 |
| BsiSI | CCGG | 3 cut(s) | 93, 2833, 3311 |
| BslFI | GGGAC | 4 cut(s) | 1123, 1184, 1722, 3392 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 2657, 3143 |
| BsmAI | GTCTC | 5 cut(s) | 482, 578, 759, 1262, 1425 |
| BsmFI | GGGAC | 4 cut(s) | 1123, 1184, 1722, 3392 |
| BsmI | GAATGC | 3 cut(s) | 191, 263, 488 |
| BsnI | GGCC | 3 cut(s) | 2443, 2890, 3310 |
| Bso31I | GGTCTC | 2 cut(s) | 482, 1425 |
| BsoBI | CYCGRG | 2 cut(s) | 783, 861 |
| Bsp1286I | GDGCHC | 5 cut(s) | 961, 1328, 1487, 2410, 3112 |
| Bsp1407I | TGTACA | 2 cut(s) | 1989, 2113 |
| Bsp19I | CCATGG | 1 cut(s) | 2392 |
| BspACI | CCGC | 7 cut(s) | 104, 106, 161, 282, 1197, 2934, 3218 |
| BspANI | GGCC | 3 cut(s) | 2443, 2890, 3310 |
| BspFNI | CGCG | 2 cut(s) | 61, 106 |
| BspHI | TCATGA | 1 cut(s) | 2920 |
| BspLI | GGNNCC | 4 cut(s) | 1484, 1598, 2721, 2981 |
| BspMI | ACCTGC | 1 cut(s) | 2991 |
| BspPI | GGATC | 3 cut(s) | 200, 1965, 3353 |
| BspQI | GCTCTTC | 1 cut(s) | 93 |
| BspT107I | GGYRCC | 3 cut(s) | 1482, 1596, 2979 |
| BspTI | CTTAAG | 2 cut(s) | 2126, 3304 |
| BspTNI | GGTCTC | 2 cut(s) | 482, 1425 |
| BsrDI | GCAATG | 3 cut(s) | 271, 2781, 3330 |
| BsrGI | TGTACA | 2 cut(s) | 1989, 2113 |
| BsrI | ACTGG | 1 cut(s) | 3233 |
| BssECI | CCNNGG | 9 cut(s) | 104, 266, 472, 1881, 2149, 2392, 2820, 3245, 3311 |
| BssNAI | GTATAC | 1 cut(s) | 3390 |
| BssNI | GRCGYC | 2 cut(s) | 1626, 3250 |
| BssSI | CACGAG | 3 cut(s) | 756, 960, 2411 |
| BssT1I | CCWWGG | 5 cut(s) | 472, 1881, 2392, 2820, 3245 |
| Bst1107I | GTATAC | 1 cut(s) | 3390 |
| Bst2BI | CACGAG | 3 cut(s) | 756, 960, 2411 |
| Bst2UI | CCWGG | 4 cut(s) | 267, 2023, 2150, 2652 |
| Bst4CI | ACNGT | 7 cut(s) | 29, 56, 416, 887, 1437, 2242, 3385 |
| Bst6I | CTCTTC | 1 cut(s) | 93 |
| BstACI | GRCGYC | 2 cut(s) | 1626, 3250 |
| BstAFI | CTTAAG | 2 cut(s) | 2126, 3304 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 3322 |
| BstAUI | TGTACA | 2 cut(s) | 1989, 2113 |
| BstBAI | YACGTR | 2 cut(s) | 1547, 1581 |
| BstC8I | GCNNGC | 2 cut(s) | 1384, 3363 |
| BstDSI | CCRYGG | 2 cut(s) | 104, 2392 |
| BstFNI | CGCG | 2 cut(s) | 61, 106 |
| BstHHI | GCGC | 4 cut(s) | 61, 1522, 2774, 3031 |
| BstMAI | GTCTC | 5 cut(s) | 482, 578, 759, 1262, 1425 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 67, 965, 2812, 3322 |
| BstNI | CCWGG | 4 cut(s) | 267, 2023, 2150, 2652 |
| BstNSI | RCATGY | 2 cut(s) | 222, 1850 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 3144 |
| BstSCI | CCNGG | 5 cut(s) | 265, 2021, 2148, 2650, 3310 |
| BstSFI | CTRYAG | 2 cut(s) | 1806, 1935 |
| BstSLI | GKGCMC | 2 cut(s) | 1487, 2410 |
| BstUI | CGCG | 2 cut(s) | 61, 106 |
| BstV1I | GCAGC | 5 cut(s) | 54, 695, 1078, 3063, 3352 |
| BstV2I | GAAGAC | 3 cut(s) | 151, 2256, 3009 |
| BstX2I | RGATCY | 2 cut(s) | 452, 1957 |
| BstYI | RGATCY | 2 cut(s) | 452, 1957 |
| BstZ17I | GTATAC | 1 cut(s) | 3390 |
| BsuI | GTATCC | 2 cut(s) | 1236, 2172 |
| BsuRI | GGCC | 3 cut(s) | 2443, 2890, 3310 |
| BtgI | CCRYGG | 2 cut(s) | 104, 2392 |
| BtrI | CACGTC | 1 cut(s) | 1106 |
| BtsI | GCAGTG | 3 cut(s) | 959, 1971, 2929 |
| BveI | ACCTGC | 1 cut(s) | 2991 |
| Cac8I | GCNNGC | 2 cut(s) | 1384, 3363 |
| CaiI | CAGNNNCTG | 1 cut(s) | 2951 |
| CciI | TCATGA | 1 cut(s) | 2920 |
| CfoI | GCGC | 4 cut(s) | 61, 1522, 2774, 3031 |
| Cfr13I | GGNCC | 2 cut(s) | 2719, 2889 |
| Cfr42I | CCGCGG | 1 cut(s) | 107 |
| CseI | GACGC | 4 cut(s) | 50, 1615, 3239, 3324 |
| CsiI | ACCWGGT | 1 cut(s) | 2021 |
| DraI | TTTAAA | 2 cut(s) | 343, 2797 |
| DraIII | CACNNNGTG | 2 cut(s) | 29, 1528 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 940 |
| DriI | GACNNNNNGTC | 1 cut(s) | 2660 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 940 |
| EaeI | YGGCCR | 1 cut(s) | 2441 |
| Eam1104I | CTCTTC | 1 cut(s) | 93 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 2660 |
| EarI | CTCTTC | 1 cut(s) | 93 |
| EciI | GGCGGA | 1 cut(s) | 176 |
| Eco130I | CCWWGG | 5 cut(s) | 472, 1881, 2392, 2820, 3245 |
| Eco24I | GRGCYC | 1 cut(s) | 961 |
| Eco31I | GGTCTC | 2 cut(s) | 482, 1425 |
| Eco32I | GATATC | 3 cut(s) | 429, 2220, 3353 |
| Eco47I | GGWCC | 1 cut(s) | 2719 |
| Eco57I | CTGAAG | 1 cut(s) | 2250 |
| Eco88I | CYCGRG | 2 cut(s) | 783, 861 |
| EcoO109I | RGGNCCY | 2 cut(s) | 2719, 2889 |
| EcoRI | GAATTC | 1 cut(s) | 2270 |
| EcoRII | CCWGG | 4 cut(s) | 265, 2021, 2148, 2650 |
| EcoRV | GATATC | 3 cut(s) | 429, 2220, 3353 |
| EcoT14I | CCWWGG | 5 cut(s) | 472, 1881, 2392, 2820, 3245 |
| EcoT22I | ATGCAT | 4 cut(s) | 490, 1216, 2079, 2731 |
| EcoT38I | GRGCYC | 1 cut(s) | 961 |
| ErhI | CCWWGG | 5 cut(s) | 472, 1881, 2392, 2820, 3245 |
| FaqI | GGGAC | 4 cut(s) | 1123, 1184, 1722, 3392 |
| FauI | CCCGC | 1 cut(s) | 2927 |
| FauNDI | CATATG | 3 cut(s) | 667, 1243, 2725 |
| FbaI | TGATCA | 3 cut(s) | 2070, 2782, 3430 |
| FblI | GTMKAC | 3 cut(s) | 2398, 3253, 3389 |
| Fnu4HI | GCNGC | 6 cut(s) | 68, 104, 709, 1092, 3052, 3366 |
| FriOI | GRGCYC | 1 cut(s) | 961 |
| Fsp4HI | GCNGC | 6 cut(s) | 68, 104, 709, 1092, 3052, 3366 |
| FspI | TGCGCA | 1 cut(s) | 3030 |
| GlaI | GCGC | 4 cut(s) | 60, 1521, 2773, 3030 |
| GluI | GCNGC | 6 cut(s) | 68, 104, 709, 1092, 3052, 3366 |
| GsaI | CCCAGC | 1 cut(s) | 972 |
| GsuI | CTGGAG | 1 cut(s) | 2588 |
| HaeIII | GGCC | 3 cut(s) | 2443, 2890, 3310 |
| HapII | CCGG | 3 cut(s) | 93, 2833, 3311 |
| HgaI | GACGC | 4 cut(s) | 50, 1615, 3239, 3324 |
| HhaI | GCGC | 4 cut(s) | 61, 1522, 2774, 3031 |
| Hin1I | GRCGYC | 2 cut(s) | 1626, 3250 |
| Hin6I | GCGC | 4 cut(s) | 59, 1520, 2772, 3029 |
| HinP1I | GCGC | 4 cut(s) | 59, 1520, 2772, 3029 |
| HincII | GTYRAC | 2 cut(s) | 2684, 3254 |
| HindII | GTYRAC | 2 cut(s) | 2684, 3254 |
| HindIII | AAGCTT | 2 cut(s) | 2123, 2254 |
| HpaII | CCGG | 3 cut(s) | 93, 2833, 3311 |
| HphI | GGTGA | 2 cut(s) | 2757, 2981 |
| Hpy166II | GTNNAC | 9 cut(s) | 111, 1992, 2114, 2399, 2684, 2709, 2830, 3254, 3390 |
| Hpy8I | GTNNAC | 9 cut(s) | 111, 1992, 2114, 2399, 2684, 2709, 2830, 3254, 3390 |
| Hpy99I | CGWCG | 1 cut(s) | 3255 |
| HpyAV | CCTTC | 6 cut(s) | 344, 1402, 2308, 2902, 3095, 3220 |
| HpyCH4III | ACNGT | 7 cut(s) | 29, 56, 416, 887, 1437, 2242, 3385 |
| HpyCH4IV | ACGT | 3 cut(s) | 1105, 1546, 1580 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 67, 965, 2812, 3322 |
| HpySE526I | ACGT | 3 cut(s) | 1105, 1546, 1580 |
| Hsp92I | GRCGYC | 2 cut(s) | 1626, 3250 |
| HspAI | GCGC | 4 cut(s) | 59, 1520, 2772, 3029 |
| KpnI | GGTACC | 2 cut(s) | 1600, 2983 |
| Ksp22I | TGATCA | 3 cut(s) | 2070, 2782, 3430 |
| KspI | CCGCGG | 1 cut(s) | 107 |
| LguI | GCTCTTC | 1 cut(s) | 93 |
| LmnI | GCTCC | 3 cut(s) | 695, 2134, 2812 |
| Lsp1109I | GCAGC | 5 cut(s) | 54, 695, 1078, 3063, 3352 |
| MabI | ACCWGGT | 1 cut(s) | 2021 |
| MaeII | ACGT | 3 cut(s) | 1105, 1546, 1580 |
| MboII | GAAGA | 9 cut(s) | 59, 110, 156, 179, 771, 1077, 1090, 2256, 3009 |
| MfeI | CAATTG | 2 cut(s) | 2346, 2877 |
| MflI | RGATCY | 2 cut(s) | 452, 1957 |
| MhlI | GDGCHC | 5 cut(s) | 961, 1328, 1487, 2410, 3112 |
| MlyI | GAGTC | 5 cut(s) | 14, 950, 1886, 2465, 2670 |
| MmeI | TCCRAC | 3 cut(s) | 601, 1580, 2523 |
| Mph1103I | ATGCAT | 4 cut(s) | 490, 1216, 2079, 2731 |
| MroXI | GAANNNNTTC | 1 cut(s) | 2033 |
| MseI | TTAA | 8 cut(s) | 342, 1071, 1401, 1706, 1839, 2127, 2796, 3305 |
| MslI | CAYNNNNRTG | 7 cut(s) | 462, 1209, 1461, 1565, 1763, 2072, 3373 |
| MspA1I | CMGCKG | 4 cut(s) | 67, 106, 3365, 3426 |
| MspCI | CTTAAG | 2 cut(s) | 2126, 3304 |
| MspI | CCGG | 3 cut(s) | 93, 2833, 3311 |
| MspR9I | CCNGG | 5 cut(s) | 267, 2023, 2150, 2652, 3312 |
| MunI | CAATTG | 2 cut(s) | 2346, 2877 |
| Mva1269I | GAATGC | 3 cut(s) | 191, 263, 488 |
| MvaI | CCWGG | 4 cut(s) | 267, 2023, 2150, 2652 |
| MvnI | CGCG | 2 cut(s) | 61, 106 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 67, 965, 2812, 3322 |
| NciI | CCSGG | 1 cut(s) | 3312 |
| NcoI | CCATGG | 1 cut(s) | 2392 |
| NdeI | CATATG | 3 cut(s) | 667, 1243, 2725 |
| NlaIV | GGNNCC | 4 cut(s) | 1484, 1598, 2721, 2981 |
| NmuCI | GTSAC | 7 cut(s) | 994, 1627, 1756, 1924, 2242, 2759, 2927 |
| NsbI | TGCGCA | 1 cut(s) | 3030 |
| NsiI | ATGCAT | 4 cut(s) | 490, 1216, 2079, 2731 |
| NspI | RCATGY | 2 cut(s) | 222, 1850 |
| PaeR7I | CTCGAG | 1 cut(s) | 783 |
| PagI | TCATGA | 1 cut(s) | 2920 |
| PciSI | GCTCTTC | 1 cut(s) | 93 |
| PctI | GAATGC | 3 cut(s) | 191, 263, 488 |
| PdmI | GAANNNNTTC | 1 cut(s) | 2033 |
| PfeI | GAWTC | 5 cut(s) | 298, 515, 1673, 2029, 2513 |
| PflFI | GACNNNGTC | 1 cut(s) | 1463 |
| PkrI | GCNGC | 6 cut(s) | 69, 105, 710, 1093, 3053, 3367 |
| PleI | GAGTC | 5 cut(s) | 13, 949, 1885, 2464, 2669 |
| PpsI | GAGTC | 5 cut(s) | 13, 949, 1885, 2464, 2669 |
| Ppu21I | YACGTR | 2 cut(s) | 1547, 1581 |
| PpuMI | RGGWCCY | 1 cut(s) | 2719 |
| PshAI | GACNNNNGTC | 1 cut(s) | 3144 |
| PshBI | ATTAAT | 1 cut(s) | 1839 |
| PsiI | TTATAA | 1 cut(s) | 557 |
| Psp5II | RGGWCCY | 1 cut(s) | 2719 |
| Psp6I | CCWGG | 4 cut(s) | 265, 2021, 2148, 2650 |
| PspFI | CCCAGC | 1 cut(s) | 968 |
| PspGI | CCWGG | 4 cut(s) | 265, 2021, 2148, 2650 |
| PspN4I | GGNNCC | 4 cut(s) | 1484, 1598, 2721, 2981 |
| PspPI | GGNCC | 2 cut(s) | 2719, 2889 |
| PspPPI | RGGWCCY | 1 cut(s) | 2719 |
| PstNI | CAGNNNCTG | 1 cut(s) | 2951 |
| PsuI | RGATCY | 2 cut(s) | 452, 1957 |
| PsyI | GACNNNGTC | 1 cut(s) | 1463 |
| PvuII | CAGCTG | 3 cut(s) | 67, 3365, 3426 |
| RseI | CAYNNNNRTG | 7 cut(s) | 462, 1209, 1461, 1565, 1763, 2072, 3373 |
| SacII | CCGCGG | 1 cut(s) | 107 |
| SalI | GTCGAC | 1 cut(s) | 3252 |
| SapI | GCTCTTC | 1 cut(s) | 93 |
| SaqAI | TTAA | 8 cut(s) | 342, 1071, 1401, 1706, 1839, 2127, 2796, 3305 |
| SatI | GCNGC | 6 cut(s) | 68, 104, 709, 1092, 3052, 3366 |
| Sau96I | GGNCC | 2 cut(s) | 2719, 2889 |
| ScaI | AGTACT | 1 cut(s) | 413 |
| SchI | GAGTC | 5 cut(s) | 14, 950, 1886, 2465, 2670 |
| ScrFI | CCNGG | 5 cut(s) | 267, 2023, 2150, 2652, 3312 |
| SduI | GDGCHC | 5 cut(s) | 961, 1328, 1487, 2410, 3112 |
| SexAI | ACCWGGT | 1 cut(s) | 2021 |
| SfcI | CTRYAG | 2 cut(s) | 1806, 1935 |
| Sfr274I | CTCGAG | 1 cut(s) | 783 |
| Sfr303I | CCGCGG | 1 cut(s) | 107 |
| SgrBI | CCGCGG | 1 cut(s) | 107 |
| SinI | GGWCC | 1 cut(s) | 2719 |
| SlaI | CTCGAG | 1 cut(s) | 783 |
| SmiMI | CAYNNNNRTG | 7 cut(s) | 462, 1209, 1461, 1565, 1763, 2072, 3373 |
| SmlI | CTYRAG | 4 cut(s) | 783, 2126, 2453, 3304 |
| SmoI | CTYRAG | 4 cut(s) | 783, 2126, 2453, 3304 |
| SpeI | ACTAGT | 2 cut(s) | 2636, 3392 |
| SsiI | CCGC | 7 cut(s) | 104, 106, 161, 282, 1197, 2934, 3218 |
| SspI | AATATT | 2 cut(s) | 627, 2279 |
| StyD4I | CCNGG | 5 cut(s) | 265, 2021, 2148, 2650, 3310 |
| StyI | CCWWGG | 5 cut(s) | 472, 1881, 2392, 2820, 3245 |
| TaaI | ACNGT | 7 cut(s) | 29, 56, 416, 887, 1437, 2242, 3385 |
| TaiI | ACGT | 3 cut(s) | 1108, 1549, 1583 |
| TaqI | TCGA | 5 cut(s) | 550, 784, 1467, 2106, 3253 |
| TaqII | GACCGA | 1 cut(s) | 3213 |
| TatI | WGTACW | 4 cut(s) | 411, 1918, 1989, 2113 |
| TauI | GCSGC | 1 cut(s) | 106 |
| TfiI | GAWTC | 5 cut(s) | 298, 515, 1673, 2029, 2513 |
| Tru1I | TTAA | 8 cut(s) | 342, 1071, 1401, 1706, 1839, 2127, 2796, 3305 |
| Tru9I | TTAA | 8 cut(s) | 342, 1071, 1401, 1706, 1839, 2127, 2796, 3305 |
| TseFI | GTSAC | 7 cut(s) | 994, 1627, 1756, 1924, 2242, 2759, 2927 |
| TseI | GCWGC | 5 cut(s) | 67, 708, 1091, 3051, 3365 |
| Tsp45I | GTSAC | 7 cut(s) | 994, 1627, 1756, 1924, 2242, 2759, 2927 |
| TspGWI | ACGGA | 4 cut(s) | 95, 830, 1188, 2078 |
| Tth111I | GACNNNGTC | 1 cut(s) | 1463 |
| Vha464I | CTTAAG | 2 cut(s) | 2126, 3304 |
| VpaK11BI | GGWCC | 1 cut(s) | 2719 |
| VspI | ATTAAT | 1 cut(s) | 1839 |
| XapI | RAATTY | 6 cut(s) | 830, 908, 1979, 2155, 2270, 2791 |
| XceI | RCATGY | 2 cut(s) | 222, 1850 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 3120 |
| XhoI | CTCGAG | 1 cut(s) | 783 |
| XmiI | GTMKAC | 3 cut(s) | 2398, 3253, 3389 |
| XmnI | GAANNNNTTC | 1 cut(s) | 2033 |
| ZrmI | AGTACT | 1 cut(s) | 413 |
| Zsp2I | ATGCAT | 4 cut(s) | 490, 1216, 2079, 2731 |