Rorug03G0136700

protein FAR1-RELATED SEQUENCE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0000143
Physical Location & Seq
Forward (+)
11249479 .. 11250426
948 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0136700.1

Sequence Viewer

Length: 948 bp
ATGGCCTCTCAACAGCAGAAGCTTCACTTTGCTTTGTTTCCGTTTATGGCTCCAGGCCACATGATCCCATTAATCGACATTGCTAAATTGCTTGCACAAGAAGGCATGATCATCACCATATTCACCACACCACATAATGCAGCCCGTTTCAAAGCAGCTCTTGATCGCGCCACAAAATCTGGGCTCCAAATCCGAGTAATCCAGCTGAAATTCCCATGTGAAGAAGTCGGATTACCTCAAGGGTGTGAGAACTTTGACATGGTACATTCACACGACATGACCTTCAACTTCTTTGCTGCAATCGCCATGCTACAACCGGAAGTGGAGAAACTGTTTGCGGAGCTAACTCCGAAGCCAAATTGCATAATCTCGGACATGTCTTTGCCATGGACAATCAACATCTCTCGCACGTTTCACATTCCCAGGATCTCTTTCAGTGGAACATGTTGCTTCTGTTTCTTGTGCCTCCACAATGTGCGCATATCCAATGTCCTTGAGAATACAGCCTCAGAATTGGACTATTTTGTTGTGCCTGACGTGCCCGATCGAATTGAGATGAACAAAGCTCAGCTACCAGGGCCTCTGAGTCCAAAAATGATTGATTTTACTAGAGAAATGTTTGCCGCCGAGTACGATTCATACGGCACAATTATGAATACTTTTGAAGAATTGGAGCAAGCGTATGTGAAAGACTACAAGAAGGCAAGAAATGGTAAGGTGTGGTGTGTTGGCCCTGTTTCACTCTGCAACAAAGATGACTTGGACAAAGCACAAAGGGGTGACAAGGCCTCAGTTGATGAACAACACTGCTTGAACTGGCTTGATTCTTGGCAACCAAGTTCTGTAATTTATGCTTGCCTCGGAACGCTATGTAATGCCGTCACGGAGCAATGGATAGAGCTCGGATTGGCTTGGAGGCATCAAAGAAACCTTTCATTTGGGTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE

Protein Analysis

315

Amino Acids

35.74

Weight (kDa)

5.72

Isoelectric Point (pI)

41.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000143)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G76710 AT1G76710 AT1G76710 AT1G76710
fragaria_vesca FvH4_1g20063 FvH4_2g15231 FvH4_3g04011 FvH4_3g28681 FvH4_4g01411 FvH4_4g10181 FvH4_4g15922 FvH4_4g16651 FvH4_4g16652 FvH4_5g13892 FvH4_5g13893 FvH4_5g20623 FvH4_5g20623 FvH4_5g20623 FvH4_5g20623 FvH4_5g25511 FvH4_6g12551 FvH4_6g12552 FvH4_6g38841 FvH4_7g04391
malus_domestica MD05G1031300.v1.1 MD05G1031400.v1.1 MD05G1031500.v1.1 MD08G1164400.v1.1 MD10G1032900.v1.1 MD10G1033000.v1.1 MD10G1033100.v1.1
prunus_persica Prupe.3G240700_v2.0.a1 Prupe.7G144600_v2.0.a1 Prupe.8G038500_v2.0.a1 Prupe.8G038500_v2.0.a1
pyrus_communis pycom05g02250 pycom05g02260 pycom05g02270 pycom05g02280 pycom08g14160 pycom10g02100 pycom10g02110 pycom10g02130
rosa_chinensis RchiOBHm_Chr1g0329481 RchiOBHm_Chr1g0329491 RchiOBHm_Chr1g0341531 RchiOBHm_Chr3g0464811 RchiOBHm_Chr3g0494701 RchiOBHm_Chr3g0497501 RchiOBHm_Chr4g0385841 RchiOBHm_Chr5g0061181 RchiOBHm_Chr6g0263001 RchiOBHm_Chr7g0193111 RchiOBHm_Chr7g0206281 RchiOBHm_Chr7g0206311
rosa_laevigata RLG00000018908 RLG00000028528 RLG00000028803 RLG00000029882 RLG00000029883 RLG00000030361
rosa_multiflora Rmu_co8196328.1_g000001 Rmu_co8259135.1_g000001 Rmu_co8269185.1_g000001 Rmu_sc0000076.1_g000019 Rmu_sc0000311.1_g000007 Rmu_sc0000429.1_g000038 Rmu_sc0000429.1_g000039 Rmu_sc0000429.1_g000040 Rmu_sc0000511.1_g000005 Rmu_sc0000539.1_g000054 Rmu_sc0000566.1_g000039 Rmu_sc0000805.1_g000032 Rmu_sc0000870.1_g000073 Rmu_sc0000870.1_g000074 Rmu_sc0001010.1_g000018 Rmu_sc0001083.1_g000013 Rmu_sc0001114.1_g000011 Rmu_sc0001702.1_g000027 Rmu_sc0001779.1_g000012 Rmu_sc0002923.1_g000036 Rmu_sc0003242.1_g000011 Rmu_sc0003291.1_g000036 Rmu_sc0003393.1_g000012 Rmu_sc0003872.1_g000016 Rmu_sc0003872.1_g000017 Rmu_sc0003872.1_g000018 Rmu_sc0004084.1_g000020 Rmu_sc0004386.1_g000005 Rmu_sc0004622.1_g000005 Rmu_sc0004742.1_g000021 Rmu_sc0004755.1_g000020 Rmu_sc0004805.1_g000036 Rmu_sc0005065.1_g000006 Rmu_sc0005177.1_g000004 Rmu_sc0006373.1_g000003 Rmu_sc0006373.1_g000004 Rmu_sc0007121.1_g000002 Rmu_sc0007943.1_g000003 Rmu_sc0010368.1_g000006 Rmu_sc0010543.1_g000001 Rmu_sc0012591.1_g000006 Rmu_sc0013504.1_g000009 Rmu_sc0015025.1_g000001 Rmu_sc0016170.1_g000001 Rmu_sc0017156.1_g000001 Rmu_sc0026439.1_g000001
rosa_roxburghii Rroxscaffold_175G00432280 Rroxscaffold_1G00030190 Rroxscaffold_1G00030880 Rroxscaffold_2G00090520 Rroxscaffold_3G00227940 Rroxscaffold_3G00233400 Rroxscaffold_3G00238500 Rroxscaffold_3G00251650 Rroxscaffold_4G00301570 Rroxscaffold_4G00321040 Rroxscaffold_5G00350880 Rroxscaffold_7G00184400
rosa_rugosa Rorug01G0080800 Rorug01G0080900 Rorug01G0193900 Rorug02G0275900 Rorug02G0275900 Rorug02G0275900 Rorug02G0305400 Rorug02G0311800 Rorug02G0350400 Rorug02G0381300 Rorug03G0136700 Rorug03G0181900 Rorug03G0268000 Rorug04G0301600 Rorug05G0175100 Rorug05G0250700 Rorug05G0298200 Rorug05G0596000 Rorug06G0029500 Rorug07G0094300 Rorug07G0094300 Rorug07G0095400 Rorug07G0140100
rosa_samantha Rh1AG099200 Rh1AG190500 Rh1BG078900 Rh1BG079000 Rh1BG079100 Rh1CG084600 Rh1CG084700 Rh1CG095300 Rh1CG175900 Rh1DG103300 Rh1DG150400 Rh2AG079300 Rh2AG272400 Rh2AG464800 Rh2AG507400 Rh2DG078300 Rh2DG078400 Rh3CG206900 Rh3CG295400 Rh3DG206800 Rh3DG356200 Rh4CG071500 Rh4CG179200 Rh4DG064700 Rh5CG362400 Rh7AG212300 Rh7AG226200 Rh7BG222200
rosa_wichuraiana Rw0G009990 Rw0G011260 Rw0G011270 Rw0G012910 Rw0G013740 Rw1G007740 Rw1G013050 Rw1G014230 Rw2G014270 Rw3G012720 Rw3G028110 Rw4G006630 Rw4G015270 Rw4G016160 Rw4G031380 Rw5G011440 Rw5G029180 Rw5G048360 Rw5G048430 Rw5G048780 Rw6G005250 Rw6G006390 Rw7G002840 Rw7G014080 Rw7G019650 Rw7G032790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 479
AccII CGCG 1 cut(s) 168
AciI CCGC 2 cut(s) 338, 624
AclWI GGATC 2 cut(s) 58, 434
AcsI RAATTY 1 cut(s) 209
AdeI CACNNNGTG 1 cut(s) 475
AfaI GTAC 2 cut(s) 264, 632
AflIII ACRYGT 2 cut(s) 375, 443
AgsI TTSAA 4 cut(s) 151, 286, 665, 814
AjiI CACGTC 1 cut(s) 538
AjnI CCWGG 3 cut(s) 52, 422, 574
AluBI AGCT 7 cut(s) 22, 158, 205, 343, 566, 571, 901
AluI AGCT 7 cut(s) 22, 158, 205, 343, 566, 571, 901
Alw21I GWGCWC 1 cut(s) 903
AlwI GGATC 2 cut(s) 58, 434
AoxI GGCC 5 cut(s) 3, 55, 578, 730, 786
ApeKI GCWGC 3 cut(s) 140, 155, 296
ApoI RAATTY 1 cut(s) 209
AseI ATTAAT 1 cut(s) 71
Asp700I GAANNNNTTC 1 cut(s) 931
AspLEI GCGC 2 cut(s) 170, 480
AspS9I GGNCC 2 cut(s) 578, 731
AsuHPI GGTGA 3 cut(s) 106, 115, 791
BaeGI GKGCMC 1 cut(s) 543
BanII GRGCYC 2 cut(s) 186, 903
BarI GAAGNNNNNNTAC 2 cut(s) 216, 248
Bbv12I GWGCWC 1 cut(s) 903
BbvI GCAGC 3 cut(s) 152, 167, 283
BceAI ACGGC 2 cut(s) 658, 863
BciT130I CCWGG 3 cut(s) 54, 424, 576
BclI TGATCA 1 cut(s) 108
BfaI CTAG 1 cut(s) 609
BisI GCNGC 4 cut(s) 141, 156, 297, 624
BlpI GCTNAGC 1 cut(s) 567
BlsI GCNGC 4 cut(s) 142, 157, 298, 625
Bme1390I CCNGG 3 cut(s) 54, 424, 576
BmgBI CACGTC 1 cut(s) 538
BmgT120I GGNCC 2 cut(s) 578, 731
BmiI GGNNCC 2 cut(s) 51, 185
BmrFI CCNGG 3 cut(s) 54, 424, 576
BmsI GCATC 1 cut(s) 928
BpmI CTGGAG 1 cut(s) 36
Bpu1102I GCTNAGC 1 cut(s) 567
BpuEI CTTGAG 2 cut(s) 222, 515
BsaJI CCNNGG 4 cut(s) 386, 422, 575, 859
BsaWI WCCGGW 1 cut(s) 316
BsaXI ACNNNNNCTCC 4 cut(s) 317, 347, 665, 695
Bse1I ACTGG 1 cut(s) 821
Bse3DI GCAATG 2 cut(s) 78, 896
BseBI CCWGG 3 cut(s) 54, 424, 576
BseDI CCNNGG 4 cut(s) 386, 422, 575, 859
BseMI GCAATG 2 cut(s) 78, 896
BseMII CTCAG 4 cut(s) 522, 575, 581, 804
BseNI ACTGG 1 cut(s) 821
BseSI GKGCMC 1 cut(s) 543
BseXI GCAGC 3 cut(s) 152, 167, 283
Bsh1236I CGCG 1 cut(s) 168
Bsh1285I CGRYCG 1 cut(s) 547
BshFI GGCC 5 cut(s) 5, 57, 580, 732, 788
BsiEI CGRYCG 1 cut(s) 547
BsiHKAI GWGCWC 1 cut(s) 903
BsiSI CCGG 1 cut(s) 317
BsnI GGCC 5 cut(s) 5, 57, 580, 732, 788
Bsp1286I GDGCHC 3 cut(s) 186, 543, 903
Bsp143I GATC 5 cut(s) 63, 108, 163, 426, 544
Bsp1720I GCTNAGC 1 cut(s) 567
Bsp19I CCATGG 1 cut(s) 386
BspACI CCGC 2 cut(s) 338, 624
BspANI GGCC 5 cut(s) 5, 57, 580, 732, 788
BspCNI CTCAG 4 cut(s) 521, 576, 580, 803
BspFNI CGCG 1 cut(s) 168
BspLI GGNNCC 2 cut(s) 51, 185
BspPI GGATC 2 cut(s) 58, 434
BsrDI GCAATG 2 cut(s) 78, 896
BsrI ACTGG 1 cut(s) 821
BssECI CCNNGG 4 cut(s) 386, 422, 575, 859
BssMI GATC 5 cut(s) 63, 108, 163, 426, 544
BssT1I CCWWGG 1 cut(s) 386
Bst2UI CCWGG 3 cut(s) 54, 424, 576
Bst4CI ACNGT 1 cut(s) 333
BstC8I GCNNGC 3 cut(s) 93, 678, 856
BstDEI CTNAG 4 cut(s) 508, 567, 584, 790
BstDSI CCRYGG 1 cut(s) 386
BstFNI CGCG 1 cut(s) 168
BstHHI GCGC 2 cut(s) 170, 480
BstKTI GATC 5 cut(s) 66, 111, 166, 429, 547
BstMBI GATC 5 cut(s) 63, 108, 163, 426, 544
BstMCI CGRYCG 1 cut(s) 547
BstMWI GCNNNNNNNGC 3 cut(s) 302, 538, 577
BstNI CCWGG 3 cut(s) 54, 424, 576
BstNSI RCATGY 2 cut(s) 379, 447
BstSCI CCNGG 3 cut(s) 52, 422, 574
BstSLI GKGCMC 1 cut(s) 543
BstUI CGCG 1 cut(s) 168
BstV1I GCAGC 3 cut(s) 152, 167, 283
BstX2I RGATCY 1 cut(s) 426
BstYI RGATCY 1 cut(s) 426
BsuRI GGCC 5 cut(s) 5, 57, 580, 732, 788
BtgI CCRYGG 1 cut(s) 386
BtrI CACGTC 1 cut(s) 538
BtsI GCAGTG 1 cut(s) 805
BtsIMutI CAGTG 2 cut(s) 442, 805
Cac8I GCNNGC 3 cut(s) 93, 678, 856
CfoI GCGC 2 cut(s) 170, 480
Cfr13I GGNCC 2 cut(s) 578, 731
Csp6I GTAC 2 cut(s) 263, 631
CviAII CATG 9 cut(s) 61, 106, 216, 259, 277, 307, 376, 387, 444
CviQI GTAC 2 cut(s) 263, 631
DdeI CTNAG 4 cut(s) 508, 567, 584, 790
DpnI GATC 5 cut(s) 65, 110, 165, 428, 546
DpnII GATC 5 cut(s) 63, 108, 163, 426, 544
DraIII CACNNNGTG 1 cut(s) 475
Ecl136II GAGCTC 1 cut(s) 901
Eco130I CCWWGG 1 cut(s) 386
Eco147I AGGCCT 1 cut(s) 788
Eco24I GRGCYC 2 cut(s) 186, 903
Eco53kI GAGCTC 1 cut(s) 901
EcoICRI GAGCTC 1 cut(s) 901
EcoO109I RGGNCCY 1 cut(s) 578
EcoRII CCWGG 3 cut(s) 52, 422, 574
EcoT14I CCWWGG 1 cut(s) 386
EcoT38I GRGCYC 2 cut(s) 186, 903
ErhI CCWWGG 1 cut(s) 386
FaeI CATG 9 cut(s) 64, 109, 219, 262, 280, 310, 379, 390, 447
FalI AAGNNNNNCTT 4 cut(s) 11, 43, 144, 176
FatI CATG 9 cut(s) 60, 105, 215, 258, 276, 306, 375, 386, 443
FbaI TGATCA 1 cut(s) 108
Fnu4HI GCNGC 4 cut(s) 141, 156, 297, 624
FriOI GRGCYC 2 cut(s) 186, 903
Fsp4HI GCNGC 4 cut(s) 141, 156, 297, 624
FspAI RTGCGCAY 1 cut(s) 479
FspBI CTAG 1 cut(s) 609
FspI TGCGCA 1 cut(s) 479
GlaI GCGC 2 cut(s) 169, 479
GluI GCNGC 4 cut(s) 141, 156, 297, 624
GsuI CTGGAG 1 cut(s) 36
HaeIII GGCC 5 cut(s) 5, 57, 580, 732, 788
HapII CCGG 1 cut(s) 317
HhaI GCGC 2 cut(s) 170, 480
Hin1II CATG 9 cut(s) 64, 109, 219, 262, 280, 310, 379, 390, 447
Hin6I GCGC 2 cut(s) 168, 478
HinP1I GCGC 2 cut(s) 168, 478
HindIII AAGCTT 1 cut(s) 20
HinfI GANTC 3 cut(s) 586, 635, 824
HpaII CCGG 1 cut(s) 317
HphI GGTGA 3 cut(s) 106, 115, 791
Hpy188I TCNGA 8 cut(s) 194, 230, 351, 373, 511, 585, 863, 905
Hpy188III TCNNGA 1 cut(s) 161
HpyAV CCTTC 3 cut(s) 95, 292, 694
HpyCH4III ACNGT 1 cut(s) 333
HpyCH4IV ACGT 2 cut(s) 410, 537
HpyCH4V TGCA 5 cut(s) 95, 140, 299, 363, 747
HpyF10VI GCNNNNNNNGC 3 cut(s) 302, 538, 577
HpyF3I CTNAG 4 cut(s) 508, 567, 584, 790
HpySE526I ACGT 2 cut(s) 410, 537
Hsp92II CATG 9 cut(s) 64, 109, 219, 262, 280, 310, 379, 390, 447
HspAI GCGC 2 cut(s) 168, 478
Ksp22I TGATCA 1 cut(s) 108
Kzo9I GATC 5 cut(s) 63, 108, 163, 426, 544
LmnI GCTCC 5 cut(s) 55, 189, 340, 673, 886
Lsp1109I GCAGC 3 cut(s) 152, 167, 283
LweI GCATC 1 cut(s) 928
MaeI CTAG 1 cut(s) 609
MaeII ACGT 2 cut(s) 410, 537
MaeIII GTNAC 2 cut(s) 779, 880
MalI GATC 5 cut(s) 65, 110, 165, 428, 546
MboI GATC 5 cut(s) 63, 108, 163, 426, 544
MboII GAAGA 2 cut(s) 233, 677
MflI RGATCY 1 cut(s) 426
MhlI GDGCHC 3 cut(s) 186, 543, 903
MluCI AATT 8 cut(s) 86, 209, 358, 512, 549, 648, 668, 846
MlyI GAGTC 1 cut(s) 595
MmeI TCCRAC 1 cut(s) 208
MnlI CCTC 8 cut(s) 16, 246, 476, 517, 591, 799, 869, 909
MroXI GAANNNNTTC 1 cut(s) 931
MseI TTAA 1 cut(s) 71
MslI CAYNNNNRTG 1 cut(s) 650
MspA1I CMGCKG 1 cut(s) 205
MspI CCGG 1 cut(s) 317
MspR9I CCNGG 3 cut(s) 54, 424, 576
MvaI CCWGG 3 cut(s) 54, 424, 576
MvnI CGCG 1 cut(s) 168
MwoI GCNNNNNNNGC 3 cut(s) 302, 538, 577
NcoI CCATGG 1 cut(s) 386
NdeII GATC 5 cut(s) 63, 108, 163, 426, 544
NlaIII CATG 9 cut(s) 64, 109, 219, 262, 280, 310, 379, 390, 447
NlaIV GGNNCC 2 cut(s) 51, 185
NmeAIII GCCGAG 1 cut(s) 652
NmuCI GTSAC 2 cut(s) 779, 880
NsbI TGCGCA 1 cut(s) 479
NspI RCATGY 2 cut(s) 379, 447
PceI AGGCCT 1 cut(s) 788
PciI ACATGT 2 cut(s) 375, 443
PdmI GAANNNNTTC 1 cut(s) 931
PfeI GAWTC 2 cut(s) 635, 824
PkrI GCNGC 4 cut(s) 142, 157, 298, 625
Ple19I CGATCG 1 cut(s) 547
PleI GAGTC 1 cut(s) 594
PpsI GAGTC 1 cut(s) 594
PscI ACATGT 2 cut(s) 375, 443
PshBI ATTAAT 1 cut(s) 71
Psp124BI GAGCTC 1 cut(s) 903
Psp6I CCWGG 3 cut(s) 52, 422, 574
PspGI CCWGG 3 cut(s) 52, 422, 574
PspN4I GGNNCC 2 cut(s) 51, 185
PspPI GGNCC 2 cut(s) 578, 731
PsuI RGATCY 1 cut(s) 426
PvuI CGATCG 1 cut(s) 547
PvuII CAGCTG 1 cut(s) 205
RsaI GTAC 2 cut(s) 264, 632
RsaNI GTAC 2 cut(s) 263, 631
RseI CAYNNNNRTG 1 cut(s) 650
SacI GAGCTC 1 cut(s) 903
SaqAI TTAA 1 cut(s) 71
SatI GCNGC 4 cut(s) 141, 156, 297, 624
Sau3AI GATC 5 cut(s) 63, 108, 163, 426, 544
Sau96I GGNCC 2 cut(s) 578, 731
SchI GAGTC 1 cut(s) 595
ScrFI CCNGG 3 cut(s) 54, 424, 576
SduI GDGCHC 3 cut(s) 186, 543, 903
SfaNI GCATC 1 cut(s) 928
SmiMI CAYNNNNRTG 1 cut(s) 650
SmlI CTYRAG 2 cut(s) 237, 494
SmoI CTYRAG 2 cut(s) 237, 494
Sse9I AATT 8 cut(s) 86, 209, 358, 512, 549, 648, 668, 846
SseBI AGGCCT 1 cut(s) 788
SsiI CCGC 2 cut(s) 338, 624
SspMI CTAG 1 cut(s) 609
SstI GAGCTC 1 cut(s) 903
StuI AGGCCT 1 cut(s) 788
StyD4I CCNGG 3 cut(s) 52, 422, 574
StyI CCWWGG 1 cut(s) 386
TaaI ACNGT 1 cut(s) 333
TaiI ACGT 2 cut(s) 413, 540
TaqI TCGA 2 cut(s) 75, 547
TasI AATT 8 cut(s) 86, 209, 358, 512, 549, 648, 668, 846
TauI GCSGC 1 cut(s) 626
TfiI GAWTC 2 cut(s) 635, 824
Tru1I TTAA 1 cut(s) 71
Tru9I TTAA 1 cut(s) 71
TscAI CASTG 2 cut(s) 442, 812
TseFI GTSAC 2 cut(s) 779, 880
TseI GCWGC 3 cut(s) 140, 155, 296
Tsp45I GTSAC 2 cut(s) 779, 880
TspDTI ATGAA 5 cut(s) 572, 627, 668, 813, 924
TspGWI ACGGA 2 cut(s) 30, 899
TspRI CASTG 2 cut(s) 442, 812
VspI ATTAAT 1 cut(s) 71
XapI RAATTY 1 cut(s) 209
XceI RCATGY 2 cut(s) 379, 447
XmnI GAANNNNTTC 1 cut(s) 931
XspI CTAG 1 cut(s) 609
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.