Rmu_sc0000870.1_g000073

protein FAR1-RELATED SEQUENCE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000870.1
OG0000143
Physical Location & Seq
Reverse (-)
310751 .. 311503
753 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000870.1_g000073.1.cds

Sequence Viewer

Length: 753 bp
atgttcagtaagttgttgggagatggtaatcatccattggcgattataactgatagggagttggctttaatgaaagcaatacaagttgtgttttcgatgactcctaatcttttatgcatatggcatattgaaaaaaatattcttgcacattgtaagggtcagtttaaggaagatgcagattgggttggttttatgtcttcttggagtacccttgtaaagtcttgggacgtgtcaatgtttaatgaagcttggaaccgttttcaaattgagtacaaagactatgcttccattctaacttacattggcaatacttggcttccatggaaagagaggtttgtatttgcatggaccggacagatttcacactttggtaataatgttacttctagagcagaaggtgcacatggaaccttaaagaaatatcttcaagtttctattggtggtctccgtgaagtgaaggaaaatatttgtcttgctattcaaaatcagtttcaagaaattagaactcaacttgcaagtgaaaaaattcgtgttcctcaaaagctttgcatccctttctttaaagaggtgattaataaggtatctttctatgctttgtttgagttacaaaagcaatattttttggcaaataccaaagactattcatcccaatgcaagggccagttttccaaaaccatgggtcttccatgtgtgcacatgatcaaggagatgaatattgaagtgctgcctttaaatgagattcatgagcaatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE

Protein Analysis

250

Amino Acids

28.99

Weight (kDa)

8.45

Isoelectric Point (pI)

35.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000143)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G76710 AT1G76710 AT1G76710 AT1G76710
fragaria_vesca FvH4_1g20063 FvH4_2g15231 FvH4_3g04011 FvH4_3g28681 FvH4_4g01411 FvH4_4g10181 FvH4_4g15922 FvH4_4g16651 FvH4_4g16652 FvH4_5g13892 FvH4_5g13893 FvH4_5g20623 FvH4_5g20623 FvH4_5g20623 FvH4_5g20623 FvH4_5g25511 FvH4_6g12551 FvH4_6g12552 FvH4_6g38841 FvH4_7g04391
malus_domestica MD05G1031300.v1.1 MD05G1031400.v1.1 MD05G1031500.v1.1 MD08G1164400.v1.1 MD10G1032900.v1.1 MD10G1033000.v1.1 MD10G1033100.v1.1
prunus_persica Prupe.3G240700_v2.0.a1 Prupe.7G144600_v2.0.a1 Prupe.8G038500_v2.0.a1 Prupe.8G038500_v2.0.a1
pyrus_communis pycom05g02250 pycom05g02260 pycom05g02270 pycom05g02280 pycom08g14160 pycom10g02100 pycom10g02110 pycom10g02130
rosa_chinensis RchiOBHm_Chr1g0329481 RchiOBHm_Chr1g0329491 RchiOBHm_Chr1g0341531 RchiOBHm_Chr3g0464811 RchiOBHm_Chr3g0494701 RchiOBHm_Chr3g0497501 RchiOBHm_Chr4g0385841 RchiOBHm_Chr5g0061181 RchiOBHm_Chr6g0263001 RchiOBHm_Chr7g0193111 RchiOBHm_Chr7g0206281 RchiOBHm_Chr7g0206311
rosa_laevigata RLG00000018908 RLG00000028528 RLG00000028803 RLG00000029882 RLG00000029883 RLG00000030361
rosa_multiflora Rmu_co8196328.1_g000001 Rmu_co8259135.1_g000001 Rmu_co8269185.1_g000001 Rmu_sc0000076.1_g000019 Rmu_sc0000311.1_g000007 Rmu_sc0000429.1_g000038 Rmu_sc0000429.1_g000039 Rmu_sc0000429.1_g000040 Rmu_sc0000511.1_g000005 Rmu_sc0000539.1_g000054 Rmu_sc0000566.1_g000039 Rmu_sc0000805.1_g000032 Rmu_sc0000870.1_g000073 Rmu_sc0000870.1_g000074 Rmu_sc0001010.1_g000018 Rmu_sc0001083.1_g000013 Rmu_sc0001114.1_g000011 Rmu_sc0001702.1_g000027 Rmu_sc0001779.1_g000012 Rmu_sc0002923.1_g000036 Rmu_sc0003242.1_g000011 Rmu_sc0003291.1_g000036 Rmu_sc0003393.1_g000012 Rmu_sc0003872.1_g000016 Rmu_sc0003872.1_g000017 Rmu_sc0003872.1_g000018 Rmu_sc0004084.1_g000020 Rmu_sc0004386.1_g000005 Rmu_sc0004622.1_g000005 Rmu_sc0004742.1_g000021 Rmu_sc0004755.1_g000020 Rmu_sc0004805.1_g000036 Rmu_sc0005065.1_g000006 Rmu_sc0005177.1_g000004 Rmu_sc0006373.1_g000003 Rmu_sc0006373.1_g000004 Rmu_sc0007121.1_g000002 Rmu_sc0007943.1_g000003 Rmu_sc0010368.1_g000006 Rmu_sc0010543.1_g000001 Rmu_sc0012591.1_g000006 Rmu_sc0013504.1_g000009 Rmu_sc0015025.1_g000001 Rmu_sc0016170.1_g000001 Rmu_sc0017156.1_g000001 Rmu_sc0026439.1_g000001
rosa_roxburghii Rroxscaffold_175G00432280 Rroxscaffold_1G00030190 Rroxscaffold_1G00030880 Rroxscaffold_2G00090520 Rroxscaffold_3G00227940 Rroxscaffold_3G00233400 Rroxscaffold_3G00238500 Rroxscaffold_3G00251650 Rroxscaffold_4G00301570 Rroxscaffold_4G00321040 Rroxscaffold_5G00350880 Rroxscaffold_7G00184400
rosa_rugosa Rorug01G0080800 Rorug01G0080900 Rorug01G0193900 Rorug02G0275900 Rorug02G0275900 Rorug02G0275900 Rorug02G0305400 Rorug02G0311800 Rorug02G0350400 Rorug02G0381300 Rorug03G0136700 Rorug03G0181900 Rorug03G0268000 Rorug04G0301600 Rorug05G0175100 Rorug05G0250700 Rorug05G0298200 Rorug05G0596000 Rorug06G0029500 Rorug07G0094300 Rorug07G0094300 Rorug07G0095400 Rorug07G0140100
rosa_samantha Rh1AG099200 Rh1AG190500 Rh1BG078900 Rh1BG079000 Rh1BG079100 Rh1CG084600 Rh1CG084700 Rh1CG095300 Rh1CG175900 Rh1DG103300 Rh1DG150400 Rh2AG079300 Rh2AG272400 Rh2AG464800 Rh2AG507400 Rh2DG078300 Rh2DG078400 Rh3CG206900 Rh3CG295400 Rh3DG206800 Rh3DG356200 Rh4CG071500 Rh4CG179200 Rh4DG064700 Rh5CG362400 Rh7AG212300 Rh7AG226200 Rh7BG222200
rosa_wichuraiana Rw0G009990 Rw0G011260 Rw0G011270 Rw0G012910 Rw0G013740 Rw1G007740 Rw1G013050 Rw1G014230 Rw2G014270 Rw3G012720 Rw3G028110 Rw4G006630 Rw4G015270 Rw4G016160 Rw4G031380 Rw5G011440 Rw5G029180 Rw5G048360 Rw5G048430 Rw5G048780 Rw6G005250 Rw6G006390 Rw7G002840 Rw7G014080 Rw7G019650 Rw7G032790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 47
AcsI RAATTY 1 cut(s) 525
AfaI GTAC 2 cut(s) 208, 272
AfiI CCNNNNNNNGG 1 cut(s) 655
AflIII ACRYGT 1 cut(s) 228
AgsI TTSAA 6 cut(s) 131, 263, 428, 482, 494, 719
AjiI CACGTC 1 cut(s) 229
AluBI AGCT 2 cut(s) 248, 544
AluI AGCT 2 cut(s) 248, 544
Alw21I GWGCWC 2 cut(s) 403, 696
Alw26I GTCTC 1 cut(s) 449
Alw44I GTGCAC 2 cut(s) 399, 692
AoxI GGCC 1 cut(s) 658
ApaLI GTGCAC 2 cut(s) 399, 692
ApeKI GCWGC 1 cut(s) 724
ApoI RAATTY 1 cut(s) 525
AseI ATTAAT 1 cut(s) 573
Asp700I GAANNNNTTC 1 cut(s) 525
AspS9I GGNCC 2 cut(s) 348, 658
AsuHPI GGTGA 1 cut(s) 580
AvaII GGWCC 1 cut(s) 348
BaeGI GKGCMC 2 cut(s) 403, 696
BbsI GAAGAC 2 cut(s) 189, 674
Bbv12I GWGCWC 2 cut(s) 403, 696
BbvI GCAGC 1 cut(s) 711
BccI CCATC 1 cut(s) 17
BclI TGATCA 1 cut(s) 699
BcoDI GTCTC 1 cut(s) 449
BfaI CTAG 1 cut(s) 387
BisI GCNGC 1 cut(s) 725
BlsI GCNGC 1 cut(s) 726
Bme18I GGWCC 1 cut(s) 348
BmgBI CACGTC 1 cut(s) 229
BmgT120I GGNCC 2 cut(s) 348, 658
BmiI GGNNCC 2 cut(s) 254, 409
BmsI GCATC 2 cut(s) 163, 558
BpiI GAAGAC 2 cut(s) 189, 674
BsaBI GATNNNNATC 1 cut(s) 27
BsaI GGTCTC 1 cut(s) 449
BsaJI CCNNGG 2 cut(s) 320, 675
BsaWI WCCGGW 1 cut(s) 350
Bsc4I CCNNNNNNNGG 1 cut(s) 655
Bse1I ACTGG 1 cut(s) 661
Bse8I GATNNNNATC 1 cut(s) 27
BseDI CCNNGG 2 cut(s) 320, 675
BseGI GGATG 3 cut(s) 31, 549, 644
BseJI GATNNNNATC 1 cut(s) 27
BseLI CCNNNNNNNGG 1 cut(s) 655
BseNI ACTGG 1 cut(s) 661
BseSI GKGCMC 2 cut(s) 403, 696
BseXI GCAGC 1 cut(s) 711
BshFI GGCC 1 cut(s) 660
BsiHKAI GWGCWC 2 cut(s) 403, 696
BsiSI CCGG 1 cut(s) 351
BslFI GGGAC 1 cut(s) 239
BslI CCNNNNNNNGG 1 cut(s) 655
BsmAI GTCTC 1 cut(s) 449
BsmFI GGGAC 1 cut(s) 239
BsnI GGCC 1 cut(s) 660
Bso31I GGTCTC 1 cut(s) 449
Bsp1286I GDGCHC 2 cut(s) 403, 696
Bsp143I GATC 1 cut(s) 699
Bsp19I CCATGG 2 cut(s) 320, 675
BspANI GGCC 1 cut(s) 660
BspHI TCATGA 1 cut(s) 742
BspLI GGNNCC 2 cut(s) 254, 409
BspTNI GGTCTC 1 cut(s) 449
BsrI ACTGG 1 cut(s) 661
BssECI CCNNGG 2 cut(s) 320, 675
BssMI GATC 1 cut(s) 699
BssT1I CCWWGG 2 cut(s) 320, 675
Bst4CI ACNGT 1 cut(s) 257
BstAPI GCANNNNNTGC 1 cut(s) 398
BstDSI CCRYGG 2 cut(s) 320, 675
BstF5I GGATG 3 cut(s) 31, 549, 644
BstKTI GATC 1 cut(s) 702
BstMAI GTCTC 1 cut(s) 449
BstMBI GATC 1 cut(s) 699
BstMWI GCNNNNNNNGC 1 cut(s) 398
BstSLI GKGCMC 2 cut(s) 403, 696
BstV1I GCAGC 1 cut(s) 711
BstV2I GAAGAC 2 cut(s) 189, 674
BstXI CCANNNNNNTGG 1 cut(s) 676
BsuRI GGCC 1 cut(s) 660
BtgI CCRYGG 2 cut(s) 320, 675
BtrI CACGTC 1 cut(s) 229
BtsCI GGATG 3 cut(s) 31, 549, 644
CciI TCATGA 1 cut(s) 742
Cfr13I GGNCC 2 cut(s) 348, 658
Csp6I GTAC 2 cut(s) 207, 271
CviAII CATG 7 cut(s) 321, 345, 404, 676, 687, 697, 743
CviJI RGCY 5 cut(s) 65, 248, 316, 544, 660
CviKI_1 RGCY 5 cut(s) 65, 248, 316, 544, 660
CviQI GTAC 2 cut(s) 207, 271
DpnI GATC 1 cut(s) 701
DpnII GATC 1 cut(s) 699
DraI TTTAAA 2 cut(s) 562, 732
Eco130I CCWWGG 2 cut(s) 320, 675
Eco31I GGTCTC 1 cut(s) 449
Eco47I GGWCC 1 cut(s) 348
EcoT14I CCWWGG 2 cut(s) 320, 675
EcoT22I ATGCAT 1 cut(s) 119
ErhI CCWWGG 2 cut(s) 320, 675
FaeI CATG 7 cut(s) 324, 348, 407, 679, 690, 700, 746
FaqI GGGAC 1 cut(s) 239
FatI CATG 7 cut(s) 320, 344, 403, 675, 686, 696, 742
FauNDI CATATG 1 cut(s) 119
FbaI TGATCA 1 cut(s) 699
Fnu4HI GCNGC 1 cut(s) 725
FokI GGATG 3 cut(s) 18, 536, 631
Fsp4HI GCNGC 1 cut(s) 725
FspBI CTAG 1 cut(s) 387
GluI GCNGC 1 cut(s) 725
HaeIII GGCC 1 cut(s) 660
HapII CCGG 1 cut(s) 351
Hin1II CATG 7 cut(s) 324, 348, 407, 679, 690, 700, 746
HindIII AAGCTT 2 cut(s) 246, 542
HinfI GANTC 2 cut(s) 100, 739
HpaII CCGG 1 cut(s) 351
HphI GGTGA 1 cut(s) 580
Hpy166II GTNNAC 2 cut(s) 401, 694
Hpy188III TCNNGA 3 cut(s) 387, 494, 743
Hpy8I GTNNAC 2 cut(s) 401, 694
HpyAV CCTTC 2 cut(s) 389, 451
HpyCH4III ACNGT 1 cut(s) 257
HpyCH4IV ACGT 1 cut(s) 228
HpyCH4V TGCA 9 cut(s) 117, 146, 176, 344, 401, 515, 549, 654, 694
HpyF10VI GCNNNNNNNGC 1 cut(s) 398
HpySE526I ACGT 1 cut(s) 228
Hsp92II CATG 7 cut(s) 324, 348, 407, 679, 690, 700, 746
Ksp22I TGATCA 1 cut(s) 699
Kzo9I GATC 1 cut(s) 699
LpnPI CCDG 2 cut(s) 364, 674
Lsp1109I GCAGC 1 cut(s) 711
LweI GCATC 2 cut(s) 163, 558
MaeI CTAG 1 cut(s) 387
MaeII ACGT 1 cut(s) 228
MaeIII GTNAC 2 cut(s) 379, 603
MalI GATC 1 cut(s) 701
MboI GATC 1 cut(s) 699
MboII GAAGA 4 cut(s) 182, 189, 416, 674
MhlI GDGCHC 2 cut(s) 403, 696
MluCI AATT 3 cut(s) 264, 498, 525
MlyI GAGTC 1 cut(s) 94
MnlI CCTC 3 cut(s) 324, 546, 559
Mph1103I ATGCAT 1 cut(s) 119
MroXI GAANNNNTTC 1 cut(s) 525
MseI TTAA 7 cut(s) 68, 165, 240, 413, 561, 573, 731
MslI CAYNNNNRTG 1 cut(s) 649
MspI CCGG 1 cut(s) 351
MwoI GCNNNNNNNGC 1 cut(s) 398
NcoI CCATGG 2 cut(s) 320, 675
NdeI CATATG 1 cut(s) 119
NdeII GATC 1 cut(s) 699
NlaIII CATG 7 cut(s) 324, 348, 407, 679, 690, 700, 746
NlaIV GGNNCC 2 cut(s) 254, 409
NsiI ATGCAT 1 cut(s) 119
PagI TCATGA 1 cut(s) 742
PdmI GAANNNNTTC 1 cut(s) 525
PfeI GAWTC 1 cut(s) 739
PkrI GCNGC 1 cut(s) 726
PleI GAGTC 1 cut(s) 94
PpsI GAGTC 1 cut(s) 94
PshBI ATTAAT 1 cut(s) 573
PsiI TTATAA 1 cut(s) 47
PspN4I GGNNCC 2 cut(s) 254, 409
PspPI GGNCC 2 cut(s) 348, 658
RsaI GTAC 2 cut(s) 208, 272
RsaNI GTAC 2 cut(s) 207, 271
RseI CAYNNNNRTG 1 cut(s) 649
SaqAI TTAA 7 cut(s) 68, 165, 240, 413, 561, 573, 731
SatI GCNGC 1 cut(s) 725
Sau3AI GATC 1 cut(s) 699
Sau96I GGNCC 2 cut(s) 348, 658
SchI GAGTC 1 cut(s) 94
SduI GDGCHC 2 cut(s) 403, 696
SetI ASST 8 cut(s) 231, 250, 335, 400, 413, 546, 570, 582
SfaNI GCATC 2 cut(s) 163, 558
SinI GGWCC 1 cut(s) 348
SmiMI CAYNNNNRTG 1 cut(s) 649
Sse9I AATT 3 cut(s) 264, 498, 525
SspI AATATT 4 cut(s) 139, 466, 617, 715
SspMI CTAG 1 cut(s) 387
StyI CCWWGG 2 cut(s) 320, 675
TaaI ACNGT 1 cut(s) 257
TaiI ACGT 1 cut(s) 231
TaqI TCGA 1 cut(s) 95
TasI AATT 3 cut(s) 264, 498, 525
TatI WGTACW 1 cut(s) 270
TfiI GAWTC 1 cut(s) 739
Tru1I TTAA 7 cut(s) 68, 165, 240, 413, 561, 573, 731
Tru9I TTAA 7 cut(s) 68, 165, 240, 413, 561, 573, 731
TseI GCWGC 1 cut(s) 724
TspDTI ATGAA 5 cut(s) 86, 258, 633, 725, 731
TspGWI ACGGA 1 cut(s) 437
VneI GTGCAC 2 cut(s) 399, 692
VpaK11BI GGWCC 1 cut(s) 348
VspI ATTAAT 1 cut(s) 573
XapI RAATTY 1 cut(s) 525
XbaI TCTAGA 1 cut(s) 386
XmnI GAANNNNTTC 1 cut(s) 525
XspI CTAG 1 cut(s) 387
Zsp2I ATGCAT 1 cut(s) 119
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.