Rmu_sc0005177.1_g000004

protein FAR1-RELATED SEQUENCE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005177.1
OG0000143
Physical Location & Seq
Reverse (-)
10609 .. 12192
1584 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005177.1_g000004.1.cds

Sequence Viewer

Length: 1314 bp
atggagttgcatcatactgatatcaagccatcttttgagaagagccgatgtttcctgcaacatgatttcaagcatgattatttgaaggaattgataagttatgtatcaattaaaactttgaacaaaatagtgtgtgaagctaatagggctaacaatattaaagacttggcatgttgtagttgtactatacgtgttacgcatggtttgccatgtgcacatgagattgctgagtacaaacgctctaatacgacaattcctattgatgcggttcacaggcattggagacagttgagtgttgatcaacccatgcatactagtgacaccgaagaaaaggttccagtaaagcaacatatggttcgattggagaagtgggttgaaaaacaaaatgatgaaactagactagaatttttgataaaaattgatgagcggatgaatccaggtagtacgttccttaaagaacatgcagaaagagtgaagacaaaagggcgtccacgtaaaattgacactagtactcgtcgtttgccatccgcatgggagattgataatgttctttctagtcaagacaaaaactcactttcacctgcagtttataaagttggtgaagatgttcctcatggtcctattgttcctgttcatcctactacagaaaagaaacaaccaaaggatagcccaaaagactctacatttgcacttacaaccaaatataattgccaattccgagttggaattcagccatatattataggagcatatgatgttgaatttgatggcaaatgtggttatagagttgtggcttcggcaatgggatttggtcgaaaatcatggcgtcgagttcgtagggatttattgaacgagttagatagtatgccacaattgtatgaaagtctctttggtactaaagaggttaagaaggttaaggatgcccttaaccattataactctgggagtgcacctaaaagatgttggatgtatttcccagaaatggggcatttgattgcaacttgttatggtgtggtggtgatcgatttatcagatggccaatgcataacatttcttcctcttgtggaacaccatagtggacatttcagtagcaatgagcttcaagagattggaattggtcatgtcaatagcaatcacttcgtacatcttaaattgtctcctggacatcctttgccaaaagttataccaaattgggagaggaatgcagacgccaaagttatacatttgtattcaagataccagaaccgtctacagcaatacaaagaatgttgtcctattactgtagtttcagagacttttacactcgatgattga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AFT FAR1 MULE

Protein Analysis

437

Amino Acids

50.25

Weight (kDa)

8.55

Isoelectric Point (pI)

41.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000143)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G76710 AT1G76710 AT1G76710 AT1G76710
fragaria_vesca FvH4_1g20063 FvH4_2g15231 FvH4_3g04011 FvH4_3g28681 FvH4_4g01411 FvH4_4g10181 FvH4_4g15922 FvH4_4g16651 FvH4_4g16652 FvH4_5g13892 FvH4_5g13893 FvH4_5g20623 FvH4_5g20623 FvH4_5g20623 FvH4_5g20623 FvH4_5g25511 FvH4_6g12551 FvH4_6g12552 FvH4_6g38841 FvH4_7g04391
malus_domestica MD05G1031300.v1.1 MD05G1031400.v1.1 MD05G1031500.v1.1 MD08G1164400.v1.1 MD10G1032900.v1.1 MD10G1033000.v1.1 MD10G1033100.v1.1
prunus_persica Prupe.3G240700_v2.0.a1 Prupe.7G144600_v2.0.a1 Prupe.8G038500_v2.0.a1 Prupe.8G038500_v2.0.a1
pyrus_communis pycom05g02250 pycom05g02260 pycom05g02270 pycom05g02280 pycom08g14160 pycom10g02100 pycom10g02110 pycom10g02130
rosa_chinensis RchiOBHm_Chr1g0329481 RchiOBHm_Chr1g0329491 RchiOBHm_Chr1g0341531 RchiOBHm_Chr3g0464811 RchiOBHm_Chr3g0494701 RchiOBHm_Chr3g0497501 RchiOBHm_Chr4g0385841 RchiOBHm_Chr5g0061181 RchiOBHm_Chr6g0263001 RchiOBHm_Chr7g0193111 RchiOBHm_Chr7g0206281 RchiOBHm_Chr7g0206311
rosa_laevigata RLG00000018908 RLG00000028528 RLG00000028803 RLG00000029882 RLG00000029883 RLG00000030361
rosa_multiflora Rmu_co8196328.1_g000001 Rmu_co8259135.1_g000001 Rmu_co8269185.1_g000001 Rmu_sc0000076.1_g000019 Rmu_sc0000311.1_g000007 Rmu_sc0000429.1_g000038 Rmu_sc0000429.1_g000039 Rmu_sc0000429.1_g000040 Rmu_sc0000511.1_g000005 Rmu_sc0000539.1_g000054 Rmu_sc0000566.1_g000039 Rmu_sc0000805.1_g000032 Rmu_sc0000870.1_g000073 Rmu_sc0000870.1_g000074 Rmu_sc0001010.1_g000018 Rmu_sc0001083.1_g000013 Rmu_sc0001114.1_g000011 Rmu_sc0001702.1_g000027 Rmu_sc0001779.1_g000012 Rmu_sc0002923.1_g000036 Rmu_sc0003242.1_g000011 Rmu_sc0003291.1_g000036 Rmu_sc0003393.1_g000012 Rmu_sc0003872.1_g000016 Rmu_sc0003872.1_g000017 Rmu_sc0003872.1_g000018 Rmu_sc0004084.1_g000020 Rmu_sc0004386.1_g000005 Rmu_sc0004622.1_g000005 Rmu_sc0004742.1_g000021 Rmu_sc0004755.1_g000020 Rmu_sc0004805.1_g000036 Rmu_sc0005065.1_g000006 Rmu_sc0005177.1_g000004 Rmu_sc0006373.1_g000003 Rmu_sc0006373.1_g000004 Rmu_sc0007121.1_g000002 Rmu_sc0007943.1_g000003 Rmu_sc0010368.1_g000006 Rmu_sc0010543.1_g000001 Rmu_sc0012591.1_g000006 Rmu_sc0013504.1_g000009 Rmu_sc0015025.1_g000001 Rmu_sc0016170.1_g000001 Rmu_sc0017156.1_g000001 Rmu_sc0026439.1_g000001
rosa_roxburghii Rroxscaffold_175G00432280 Rroxscaffold_1G00030190 Rroxscaffold_1G00030880 Rroxscaffold_2G00090520 Rroxscaffold_3G00227940 Rroxscaffold_3G00233400 Rroxscaffold_3G00238500 Rroxscaffold_3G00251650 Rroxscaffold_4G00301570 Rroxscaffold_4G00321040 Rroxscaffold_5G00350880 Rroxscaffold_7G00184400
rosa_rugosa Rorug01G0080800 Rorug01G0080900 Rorug01G0193900 Rorug02G0275900 Rorug02G0275900 Rorug02G0275900 Rorug02G0305400 Rorug02G0311800 Rorug02G0350400 Rorug02G0381300 Rorug03G0136700 Rorug03G0181900 Rorug03G0268000 Rorug04G0301600 Rorug05G0175100 Rorug05G0250700 Rorug05G0298200 Rorug05G0596000 Rorug06G0029500 Rorug07G0094300 Rorug07G0094300 Rorug07G0095400 Rorug07G0140100
rosa_samantha Rh1AG099200 Rh1AG190500 Rh1BG078900 Rh1BG079000 Rh1BG079100 Rh1CG084600 Rh1CG084700 Rh1CG095300 Rh1CG175900 Rh1DG103300 Rh1DG150400 Rh2AG079300 Rh2AG272400 Rh2AG464800 Rh2AG507400 Rh2DG078300 Rh2DG078400 Rh3CG206900 Rh3CG295400 Rh3DG206800 Rh3DG356200 Rh4CG071500 Rh4CG179200 Rh4DG064700 Rh5CG362400 Rh7AG212300 Rh7AG226200 Rh7BG222200
rosa_wichuraiana Rw0G009990 Rw0G011260 Rw0G011270 Rw0G012910 Rw0G013740 Rw1G007740 Rw1G013050 Rw1G014230 Rw2G014270 Rw3G012720 Rw3G028110 Rw4G006630 Rw4G015270 Rw4G016160 Rw4G031380 Rw5G011440 Rw5G029180 Rw5G048360 Rw5G048430 Rw5G048780 Rw6G005250 Rw6G006390 Rw7G002840 Rw7G014080 Rw7G019650 Rw7G032790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 591, 936
AarI CACCTGC 1 cut(s) 589
Acc36I ACCTGC 1 cut(s) 589
AccBSI CCGCTC 1 cut(s) 427
AccI GTMKAC 1 cut(s) 1249
AciI CCGC 3 cut(s) 266, 427, 528
AcoI YGGCCR 1 cut(s) 1036
AcsI RAATTY 3 cut(s) 404, 726, 761
AcyI GRCGYC 3 cut(s) 487, 826, 1209
AfaI GTAC 6 cut(s) 184, 233, 445, 511, 895, 1143
AfiI CCNNNNNNNGG 2 cut(s) 982, 983
AflIII ACRYGT 1 cut(s) 190
AgsI TTSAA 8 cut(s) 70, 85, 121, 377, 761, 850, 1103, 1233
AhlI ACTAGT 2 cut(s) 314, 506
AjnI CCWGG 2 cut(s) 436, 1159
AjuI GAANNNNNNNTTGG 2 cut(s) 873, 905
AleI CACNNNNGTG 1 cut(s) 1074
AluBI AGCT 2 cut(s) 140, 1099
AluI AGCT 2 cut(s) 140, 1099
Alw21I GWGCWC 2 cut(s) 217, 952
Alw26I GTCTC 4 cut(s) 277, 890, 1161, 1286
Alw44I GTGCAC 2 cut(s) 213, 948
AoxI GGCC 1 cut(s) 1036
ApaLI GTGCAC 2 cut(s) 213, 948
ApoI RAATTY 3 cut(s) 404, 726, 761
ArsI GACNNNNNNTTYG 2 cut(s) 668, 700
Asp700I GAANNNNTTC 2 cut(s) 333, 606
AspS9I GGNCC 1 cut(s) 617
AsuHPI GGTGA 3 cut(s) 570, 611, 1030
AvaII GGWCC 1 cut(s) 617
BaeGI GKGCMC 2 cut(s) 217, 952
BalI TGGCCA 1 cut(s) 1038
BbsI GAAGAC 1 cut(s) 482
Bbv12I GWGCWC 2 cut(s) 217, 952
BccI CCATC 4 cut(s) 37, 532, 761, 1028
BcgI CGANNNNNNTGC 2 cut(s) 1120, 1154
BciT130I CCWGG 2 cut(s) 438, 1161
BclI TGATCA 1 cut(s) 298
BcoDI GTCTC 4 cut(s) 277, 890, 1161, 1286
BcuI ACTAGT 2 cut(s) 314, 506
BfaI CTAG 5 cut(s) 315, 396, 401, 507, 555
BfmI CTRYAG 4 cut(s) 582, 642, 1250, 1281
BfuAI ACCTGC 1 cut(s) 589
BmcAI AGTACT 1 cut(s) 511
Bme1390I CCNGG 2 cut(s) 438, 1161
Bme18I GGWCC 1 cut(s) 617
BmgT120I GGNCC 1 cut(s) 617
BmiI GGNNCC 1 cut(s) 336
BmrFI CCNGG 2 cut(s) 438, 1161
BmsI GCATC 3 cut(s) 19, 253, 910
BpiI GAAGAC 1 cut(s) 482
Bsa29I ATCGAT 1 cut(s) 1023
BsaAI YACGTR 2 cut(s) 191, 494
BsaHI GRCGYC 3 cut(s) 487, 826, 1209
Bsc4I CCNNNNNNNGG 2 cut(s) 982, 983
Bse1I ACTGG 1 cut(s) 338
Bse3DI GCAATG 2 cut(s) 807, 1099
BseBI CCWGG 2 cut(s) 438, 1161
BseCI ATCGAT 1 cut(s) 1023
BseGI GGATG 6 cut(s) 435, 524, 634, 925, 972, 1165
BseLI CCNNNNNNNGG 2 cut(s) 982, 983
BseMI GCAATG 2 cut(s) 807, 1099
BseMII CTCAG 1 cut(s) 219
BseNI ACTGG 1 cut(s) 338
BseSI GKGCMC 2 cut(s) 217, 952
BshFI GGCC 1 cut(s) 1038
BshVI ATCGAT 1 cut(s) 1023
BsiHKAI GWGCWC 2 cut(s) 217, 952
BslI CCNNNNNNNGG 2 cut(s) 982, 983
BsmAI GTCTC 4 cut(s) 277, 890, 1161, 1286
BsmI GAATGC 1 cut(s) 1207
BsnI GGCC 1 cut(s) 1038
Bsp1286I GDGCHC 2 cut(s) 217, 952
Bsp143I GATC 2 cut(s) 298, 1020
BspACI CCGC 3 cut(s) 266, 427, 528
BspANI GGCC 1 cut(s) 1038
BspCNI CTCAG 1 cut(s) 220
BspDI ATCGAT 1 cut(s) 1023
BspLI GGNNCC 1 cut(s) 336
BspMAI CTGCAG 1 cut(s) 586
BspMI ACCTGC 1 cut(s) 589
BspQI GCTCTTC 1 cut(s) 35
BsrBI CCGCTC 1 cut(s) 427
BsrDI GCAATG 2 cut(s) 807, 1099
BsrI ACTGG 1 cut(s) 338
BssMI GATC 2 cut(s) 298, 1020
BssNI GRCGYC 3 cut(s) 487, 826, 1209
Bst2UI CCWGG 2 cut(s) 438, 1161
Bst4CI ACNGT 3 cut(s) 288, 1247, 1282
Bst6I CTCTTC 1 cut(s) 35
BstACI GRCGYC 3 cut(s) 487, 826, 1209
BstAPI GCANNNNNTGC 1 cut(s) 205
BstBAI YACGTR 2 cut(s) 191, 494
BstDEI CTNAG 1 cut(s) 228
BstF5I GGATG 6 cut(s) 435, 524, 634, 925, 972, 1165
BstKTI GATC 2 cut(s) 301, 1023
BstMAI GTCTC 4 cut(s) 277, 890, 1161, 1286
BstMBI GATC 2 cut(s) 298, 1020
BstMWI GCNNNNNNNGC 2 cut(s) 146, 205
BstNI CCWGG 2 cut(s) 438, 1161
BstNSI RCATGY 2 cut(s) 174, 464
BstSCI CCNGG 2 cut(s) 436, 1159
BstSFI CTRYAG 4 cut(s) 582, 642, 1250, 1281
BstSLI GKGCMC 2 cut(s) 217, 952
BstV2I GAAGAC 1 cut(s) 482
BstXI CCANNNNNNTGG 1 cut(s) 531
Bsu15I ATCGAT 1 cut(s) 1023
BsuRI GGCC 1 cut(s) 1038
BsuTUI ATCGAT 1 cut(s) 1023
BtsCI GGATG 6 cut(s) 435, 524, 634, 925, 972, 1165
BveI ACCTGC 1 cut(s) 589
Cfr13I GGNCC 1 cut(s) 617
ClaI ATCGAT 1 cut(s) 1023
CseI GACGC 3 cut(s) 476, 815, 1217
Csp6I GTAC 6 cut(s) 183, 232, 444, 510, 894, 1142
CviJI RGCY 9 cut(s) 28, 45, 140, 149, 669, 733, 794, 1038, 1099
CviKI_1 RGCY 9 cut(s) 28, 45, 140, 149, 669, 733, 794, 1038, 1099
CviQI GTAC 6 cut(s) 183, 232, 444, 510, 894, 1142
DdeI CTNAG 1 cut(s) 228
DpnI GATC 2 cut(s) 300, 1022
DpnII GATC 2 cut(s) 298, 1020
EaeI YGGCCR 1 cut(s) 1036
Eam1104I CTCTTC 1 cut(s) 35
EarI CTCTTC 1 cut(s) 35
Eco32I GATATC 1 cut(s) 22
Eco47I GGWCC 1 cut(s) 617
EcoRI GAATTC 1 cut(s) 726
EcoRII CCWGG 2 cut(s) 436, 1159
EcoRV GATATC 1 cut(s) 22
EcoT22I ATGCAT 2 cut(s) 312, 1046
FauNDI CATATG 2 cut(s) 351, 751
FbaI TGATCA 1 cut(s) 298
FblI GTMKAC 1 cut(s) 1249
FokI GGATG 6 cut(s) 442, 511, 621, 932, 979, 1152
FspBI CTAG 5 cut(s) 315, 396, 401, 507, 555
HaeIII GGCC 1 cut(s) 1038
HgaI GACGC 3 cut(s) 476, 815, 1217
Hin1I GRCGYC 3 cut(s) 487, 826, 1209
HinfI GANTC 2 cut(s) 433, 677
HphI GGTGA 3 cut(s) 570, 611, 1030
Hpy166II GTNNAC 6 cut(s) 215, 271, 491, 950, 1079, 1250
Hpy188I TCNGA 3 cut(s) 719, 1033, 1291
Hpy188III TCNNGA 3 cut(s) 560, 1103, 1233
Hpy8I GTNNAC 6 cut(s) 215, 271, 491, 950, 1079, 1250
Hpy99I CGWCG 2 cut(s) 519, 831
HpyAV CCTTC 2 cut(s) 79, 904
HpyCH4III ACNGT 3 cut(s) 288, 1247, 1282
HpyCH4IV ACGT 3 cut(s) 190, 446, 493
HpyF10VI GCNNNNNNNGC 2 cut(s) 146, 205
HpyF3I CTNAG 1 cut(s) 228
HpySE526I ACGT 3 cut(s) 190, 446, 493
Hsp92I GRCGYC 3 cut(s) 487, 826, 1209
Ksp22I TGATCA 1 cut(s) 298
Kzo9I GATC 2 cut(s) 298, 1020
LguI GCTCTTC 1 cut(s) 35
LmnI GCTCC 1 cut(s) 746
LweI GCATC 3 cut(s) 19, 253, 910
MaeI CTAG 5 cut(s) 315, 396, 401, 507, 555
MaeII ACGT 3 cut(s) 190, 446, 493
MaeIII GTNAC 2 cut(s) 193, 317
MalI GATC 2 cut(s) 300, 1022
MbiI CCGCTC 1 cut(s) 427
MboI GATC 2 cut(s) 298, 1020
MboII GAAGA 5 cut(s) 52, 338, 487, 614, 1046
MfeI CAATTG 1 cut(s) 872
MhlI GDGCHC 2 cut(s) 217, 952
MlsI TGGCCA 1 cut(s) 1038
MluNI TGGCCA 1 cut(s) 1038
MlyI GAGTC 1 cut(s) 671
MmeI TCCRAC 2 cut(s) 703, 944
MnlI CCTC 4 cut(s) 621, 895, 1068, 1191
Mox20I TGGCCA 1 cut(s) 1038
Mph1103I ATGCAT 2 cut(s) 312, 1046
MroXI GAANNNNTTC 2 cut(s) 333, 606
MscI TGGCCA 1 cut(s) 1038
MseI TTAA 7 cut(s) 111, 159, 453, 906, 915, 927, 1149
MslI CAYNNNNRTG 3 cut(s) 315, 529, 1074
Msp20I TGGCCA 1 cut(s) 1038
MspR9I CCNGG 2 cut(s) 438, 1161
MunI CAATTG 1 cut(s) 872
Mva1269I GAATGC 1 cut(s) 1207
MvaI CCWGG 2 cut(s) 438, 1161
MwoI GCNNNNNNNGC 2 cut(s) 146, 205
NdeI CATATG 2 cut(s) 351, 751
NdeII GATC 2 cut(s) 298, 1020
NlaIV GGNNCC 1 cut(s) 336
NmuCI GTSAC 1 cut(s) 317
NsiI ATGCAT 2 cut(s) 312, 1046
NspI RCATGY 2 cut(s) 174, 464
OliI CACNNNNGTG 1 cut(s) 1074
PaqCI CACCTGC 1 cut(s) 589
PciSI GCTCTTC 1 cut(s) 35
PctI GAATGC 1 cut(s) 1207
PdmI GAANNNNTTC 2 cut(s) 333, 606
PfeI GAWTC 1 cut(s) 433
PfoI TCCNGGA 1 cut(s) 1159
PleI GAGTC 1 cut(s) 671
PpsI GAGTC 1 cut(s) 671
Ppu21I YACGTR 2 cut(s) 191, 494
PsiI TTATAA 2 cut(s) 591, 936
Psp6I CCWGG 2 cut(s) 436, 1159
PspGI CCWGG 2 cut(s) 436, 1159
PspN4I GGNNCC 1 cut(s) 336
PspPI GGNCC 1 cut(s) 617
PstI CTGCAG 1 cut(s) 586
RsaI GTAC 6 cut(s) 184, 233, 445, 511, 895, 1143
RsaNI GTAC 6 cut(s) 183, 232, 444, 510, 894, 1142
RseI CAYNNNNRTG 3 cut(s) 315, 529, 1074
SapI GCTCTTC 1 cut(s) 35
SaqAI TTAA 7 cut(s) 111, 159, 453, 906, 915, 927, 1149
Sau3AI GATC 2 cut(s) 298, 1020
Sau96I GGNCC 1 cut(s) 617
ScaI AGTACT 1 cut(s) 511
SchI GAGTC 1 cut(s) 671
ScrFI CCNGG 2 cut(s) 438, 1161
SduI GDGCHC 2 cut(s) 217, 952
SfaNI GCATC 3 cut(s) 19, 253, 910
SfcI CTRYAG 4 cut(s) 582, 642, 1250, 1281
SinI GGWCC 1 cut(s) 617
SmiMI CAYNNNNRTG 3 cut(s) 315, 529, 1074
SpeI ACTAGT 2 cut(s) 314, 506
SsiI CCGC 3 cut(s) 266, 427, 528
SspI AATATT 1 cut(s) 157
SspMI CTAG 5 cut(s) 315, 396, 401, 507, 555
StyD4I CCNGG 2 cut(s) 436, 1159
TaaI ACNGT 3 cut(s) 288, 1247, 1282
TaiI ACGT 3 cut(s) 193, 449, 496
TaqI TCGA 5 cut(s) 358, 814, 829, 1023, 1305
TatI WGTACW 3 cut(s) 182, 231, 509
TfiI GAWTC 1 cut(s) 433
Tru1I TTAA 7 cut(s) 111, 159, 453, 906, 915, 927, 1149
Tru9I TTAA 7 cut(s) 111, 159, 453, 906, 915, 927, 1149
TseFI GTSAC 1 cut(s) 317
Tsp45I GTSAC 1 cut(s) 317
TspDTI ATGAA 4 cut(s) 405, 446, 623, 894
VneI GTGCAC 2 cut(s) 213, 948
VpaK11BI GGWCC 1 cut(s) 617
XapI RAATTY 3 cut(s) 404, 726, 761
XceI RCATGY 2 cut(s) 174, 464
XcmI CCANNNNNNNNNTGG 2 cut(s) 719, 938
XmiI GTMKAC 1 cut(s) 1249
XmnI GAANNNNTTC 2 cut(s) 333, 606
XspI CTAG 5 cut(s) 315, 396, 401, 507, 555
ZrmI AGTACT 1 cut(s) 511
Zsp2I ATGCAT 2 cut(s) 312, 1046
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.