Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0000143

Physical Location & Seq

Genomic Coordinates Forward (+)

3816839 .. 3819401

Gene Structure 2563 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G038500.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 804 bp

ATGTACGTTAATGGGAGTCTTCGGATCCAAAGCTATGGTTGGCTGCTTATGGATCTACACACAAAGTATTCAGTTGAGAAAATTCCACTATATGATTCTGCAGAGGATGAGCCTTCCTCGAGGCTCTTCAAGACTGTCAACTCCTCAAGTTCTGAATTTGATGTTGATGGGATGATGATCAATGTCAATGTGGATTCTGGACATCAGTTGATGTCTACTGCTCTTGTTGTGCAATCACTTGATTCTGTTCCAATGGAGGGTGTAGTGATGGGGGTAAAAACAGAAGTGAGTGAGGAGAGGAAACTTTATTCACAAGAAAATCAACCACCTTTTTCAAGAAAGAATGCAATGATATCTCGTATCCGCAGTAATACTGCATGTCGTAACTATCACATTGGATCAGGATCCATGCCAAACAAAAGATCAAAACAATACTCTAATGGAAAGGTGAAACATGGTGCACAAAAGCAAGTTGACGCCAAGTCTTTTGCTTCGCTTTTAGCATCAAGGGAAGCACAAGAGGAAATTTTAAAATATGAGTGTATGAAAAATGATGCTGCCACTCATCTTGAATCTTTATACAATGAGATACGACCTGCTATTGAAGAACATGAAAGGGACAGCCAAGACAGCGTAGCTACCAGCGTAGCTGAGAAGTGGATTGAAGCCTGCTGCTTGAAACTGAAGGCAGAATTCGACCTTTATTCTTCCATTGTTAAAAGCATTGCCTGCACTCCACGAAGGGGCCAAGCTGAACCTTATGATGGCAACAATGAGAATGAAATCAAGTACCTGCAGAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006281 GO:0006325 GO:0006464 GO:0006479 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008213 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009791 GO:0009987 GO:0010224 GO:0010228 GO:0016043 GO:0016569 GO:0016570 GO:0016571 GO:0019538 GO:0022414 GO:0032259 GO:0032501 GO:0032502 GO:0033554 GO:0034641 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046483 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0051276 GO:0051716 GO:0061458 GO:0071704 GO:0071840 GO:0090304 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00310 map00310

Pfam Domains

Protein Families

SET

Protein Analysis

268

Amino Acids

30.08

Weight (kDa)

5.77

Isoelectric Point (pI)

66.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000143)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G76710 AT1G76710 AT1G76710 AT1G76710
fragaria_vesca	FvH4_1g20063 FvH4_2g15231 FvH4_3g04011 FvH4_3g28681 FvH4_4g01411 FvH4_4g10181 FvH4_4g15922 FvH4_4g16651 FvH4_4g16652 FvH4_5g13892 FvH4_5g13893 FvH4_5g20623 FvH4_5g20623 FvH4_5g20623 FvH4_5g20623 FvH4_5g25511 FvH4_6g12551 FvH4_6g12552 FvH4_6g38841 FvH4_7g04391
malus_domestica	MD05G1031300.v1.1 MD05G1031400.v1.1 MD05G1031500.v1.1 MD08G1164400.v1.1 MD10G1032900.v1.1 MD10G1033000.v1.1 MD10G1033100.v1.1
prunus_persica	Prupe.3G240700_v2.0.a1 Prupe.7G144600_v2.0.a1 Prupe.8G038500_v2.0.a1 Prupe.8G038500_v2.0.a1
pyrus_communis	pycom05g02250 pycom05g02260 pycom05g02270 pycom05g02280 pycom08g14160 pycom10g02100 pycom10g02110 pycom10g02130
rosa_chinensis	RchiOBHm_Chr1g0329481 RchiOBHm_Chr1g0329491 RchiOBHm_Chr1g0341531 RchiOBHm_Chr3g0464811 RchiOBHm_Chr3g0494701 RchiOBHm_Chr3g0497501 RchiOBHm_Chr4g0385841 RchiOBHm_Chr5g0061181 RchiOBHm_Chr6g0263001 RchiOBHm_Chr7g0193111 RchiOBHm_Chr7g0206281 RchiOBHm_Chr7g0206311
rosa_laevigata	RLG00000018908 RLG00000028528 RLG00000028803 RLG00000029882 RLG00000029883 RLG00000030361
rosa_multiflora	Rmu_co8196328.1_g000001 Rmu_co8259135.1_g000001 Rmu_co8269185.1_g000001 Rmu_sc0000076.1_g000019 Rmu_sc0000311.1_g000007 Rmu_sc0000429.1_g000038 Rmu_sc0000429.1_g000039 Rmu_sc0000429.1_g000040 Rmu_sc0000511.1_g000005 Rmu_sc0000539.1_g000054 Rmu_sc0000566.1_g000039 Rmu_sc0000805.1_g000032 Rmu_sc0000870.1_g000073 Rmu_sc0000870.1_g000074 Rmu_sc0001010.1_g000018 Rmu_sc0001083.1_g000013 Rmu_sc0001114.1_g000011 Rmu_sc0001702.1_g000027 Rmu_sc0001779.1_g000012 Rmu_sc0002923.1_g000036 Rmu_sc0003242.1_g000011 Rmu_sc0003291.1_g000036 Rmu_sc0003393.1_g000012 Rmu_sc0003872.1_g000016 Rmu_sc0003872.1_g000017 Rmu_sc0003872.1_g000018 Rmu_sc0004084.1_g000020 Rmu_sc0004386.1_g000005 Rmu_sc0004622.1_g000005 Rmu_sc0004742.1_g000021 Rmu_sc0004755.1_g000020 Rmu_sc0004805.1_g000036 Rmu_sc0005065.1_g000006 Rmu_sc0005177.1_g000004 Rmu_sc0006373.1_g000003 Rmu_sc0006373.1_g000004 Rmu_sc0007121.1_g000002 Rmu_sc0007943.1_g000003 Rmu_sc0010368.1_g000006 Rmu_sc0010543.1_g000001 Rmu_sc0012591.1_g000006 Rmu_sc0013504.1_g000009 Rmu_sc0015025.1_g000001 Rmu_sc0016170.1_g000001 Rmu_sc0017156.1_g000001 Rmu_sc0026439.1_g000001
rosa_roxburghii	Rroxscaffold_175G00432280 Rroxscaffold_1G00030190 Rroxscaffold_1G00030880 Rroxscaffold_2G00090520 Rroxscaffold_3G00227940 Rroxscaffold_3G00233400 Rroxscaffold_3G00238500 Rroxscaffold_3G00251650 Rroxscaffold_4G00301570 Rroxscaffold_4G00321040 Rroxscaffold_5G00350880 Rroxscaffold_7G00184400
rosa_rugosa	Rorug01G0080800 Rorug01G0080900 Rorug01G0193900 Rorug02G0275900 Rorug02G0275900 Rorug02G0275900 Rorug02G0305400 Rorug02G0311800 Rorug02G0350400 Rorug02G0381300 Rorug03G0136700 Rorug03G0181900 Rorug03G0268000 Rorug04G0301600 Rorug05G0175100 Rorug05G0250700 Rorug05G0298200 Rorug05G0596000 Rorug06G0029500 Rorug07G0094300 Rorug07G0094300 Rorug07G0095400 Rorug07G0140100
rosa_samantha	Rh1AG099200 Rh1AG190500 Rh1BG078900 Rh1BG079000 Rh1BG079100 Rh1CG084600 Rh1CG084700 Rh1CG095300 Rh1CG175900 Rh1DG103300 Rh1DG150400 Rh2AG079300 Rh2AG272400 Rh2AG464800 Rh2AG507400 Rh2DG078300 Rh2DG078400 Rh3CG206900 Rh3CG295400 Rh3DG206800 Rh3DG356200 Rh4CG071500 Rh4CG179200 Rh4DG064700 Rh5CG362400 Rh7AG212300 Rh7AG226200 Rh7BG222200
rosa_wichuraiana	Rw0G009990 Rw0G011260 Rw0G011270 Rw0G012910 Rw0G013740 Rw1G007740 Rw1G013050 Rw1G014230 Rw2G014270 Rw3G012720 Rw3G028110 Rw4G006630 Rw4G015270 Rw4G016160 Rw4G031380 Rw5G011440 Rw5G029180 Rw5G048360 Rw5G048430 Rw5G048780 Rw6G005250 Rw6G006390 Rw7G002840 Rw7G014080 Rw7G019650 Rw7G032790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	118
Acc36I	ACCTGC	1 cut(s)	604
AccI	GTMKAC	1 cut(s)	215
AciI	CCGC	1 cut(s)	364
AclWI	GGATC	6 cut(s)	19, 32, 60, 399, 406, 412
AcsI	RAATTY	4 cut(s)	81, 155, 525, 692
AcuI	CTGAAG	1 cut(s)	704
AcyI	GRCGYC	1 cut(s)	477
AfaI	GTAC	2 cut(s)	5, 791
AfiI	CCNNNNNNNGG	3 cut(s)	257, 743, 764
AgsI	TTSAA	6 cut(s)	130, 336, 572, 605, 665, 679
AhdI	GACNNNNNGTC	1 cut(s)	481
AluBI	AGCT	4 cut(s)	33, 638, 650, 752
AluI	AGCT	4 cut(s)	33, 638, 650, 752
Alw21I	GWGCWC	1 cut(s)	463
Alw44I	GTGCAC	1 cut(s)	459
AlwI	GGATC	6 cut(s)	19, 32, 60, 399, 406, 412
Ama87I	CYCGRG	1 cut(s)	118
AoxI	GGCC	1 cut(s)	745
ApaLI	GTGCAC	1 cut(s)	459
ApeKI	GCWGC	3 cut(s)	43, 557, 672
ApoI	RAATTY	4 cut(s)	81, 155, 525, 692
AspS9I	GGNCC	1 cut(s)	745
AsuHPI	GGTGA	1 cut(s)	460
AvaI	CYCGRG	1 cut(s)	118
BaeGI	GKGCMC	1 cut(s)	463
BamHI	GGATCC	2 cut(s)	24, 404
BbsI	GAAGAC	1 cut(s)	11
Bbv12I	GWGCWC	1 cut(s)	463
BbvI	GCAGC	3 cut(s)	30, 544, 659
BccI	CCATC	3 cut(s)	161, 262, 758
BciVI	GTATCC	1 cut(s)	371
BclI	TGATCA	1 cut(s)	177
BfmI	CTRYAG	2 cut(s)	99, 794
BfuAI	ACCTGC	1 cut(s)	604
BfuI	GTATCC	1 cut(s)	371
BisI	GCNGC	3 cut(s)	44, 558, 673
BlsI	GCNGC	3 cut(s)	45, 559, 674
BmeRI	GACNNNNNGTC	1 cut(s)	481
BmeT110I	CYCGRG	1 cut(s)	118
BmgT120I	GGNCC	1 cut(s)	745
BmiI	GGNNCC	3 cut(s)	26, 406, 746
BmsI	GCATC	2 cut(s)	512, 544
BpiI	GAAGAC	1 cut(s)	11
BplI	GAGNNNNNCTC	2 cut(s)	101, 133
BpuEI	CTTGAG	1 cut(s)	130
BsaBI	GATNNNNATC	2 cut(s)	176, 403
BsaHI	GRCGYC	1 cut(s)	477
Bsc4I	CCNNNNNNNGG	3 cut(s)	257, 743, 764
Bse3DI	GCAATG	2 cut(s)	354, 723
Bse8I	GATNNNNATC	2 cut(s)	176, 403
BseGI	GGATG	2 cut(s)	112, 177
BseJI	GATNNNNATC	2 cut(s)	176, 403
BseLI	CCNNNNNNNGG	3 cut(s)	257, 743, 764
BseMI	GCAATG	2 cut(s)	354, 723
BseMII	CTCAG	1 cut(s)	642
BseRI	GAGGAG	2 cut(s)	133, 308
BseSI	GKGCMC	1 cut(s)	463
BseXI	GCAGC	3 cut(s)	30, 544, 659
BsgI	GTGCAG	1 cut(s)	715
BshFI	GGCC	1 cut(s)	747
BsiHKAI	GWGCWC	1 cut(s)	463
BsiHKCI	CYCGRG	1 cut(s)	118
BslFI	GGGAC	1 cut(s)	632
BslI	CCNNNNNNNGG	3 cut(s)	257, 743, 764
BsmFI	GGGAC	1 cut(s)	632
BsmI	GAATGC	1 cut(s)	349
BsnI	GGCC	1 cut(s)	747
BsoBI	CYCGRG	1 cut(s)	118
Bsp1286I	GDGCHC	1 cut(s)	463
Bsp143I	GATC	6 cut(s)	24, 52, 177, 398, 404, 422
BspACI	CCGC	1 cut(s)	364
BspANI	GGCC	1 cut(s)	747
BspCNI	CTCAG	1 cut(s)	643
BspLI	GGNNCC	3 cut(s)	26, 406, 746
BspMAI	CTGCAG	2 cut(s)	103, 798
BspMI	ACCTGC	1 cut(s)	604
BspPI	GGATC	6 cut(s)	19, 32, 60, 399, 406, 412
BspQI	GCTCTTC	1 cut(s)	131
BsrDI	GCAATG	2 cut(s)	354, 723
BssMI	GATC	6 cut(s)	24, 52, 177, 398, 404, 422
BssNI	GRCGYC	1 cut(s)	477
Bst4CI	ACNGT	1 cut(s)	136
Bst6I	CTCTTC	1 cut(s)	131
BstACI	GRCGYC	1 cut(s)	477
BstAPI	GCANNNNNTGC	1 cut(s)	729
BstC8I	GCNNGC	2 cut(s)	670, 730
BstDEI	CTNAG	1 cut(s)	651
BstF5I	GGATG	2 cut(s)	112, 177
BstKTI	GATC	6 cut(s)	27, 55, 180, 401, 407, 425
BstMBI	GATC	6 cut(s)	24, 52, 177, 398, 404, 422
BstMWI	GCNNNNNNNGC	2 cut(s)	630, 729
BstNSI	RCATGY	1 cut(s)	381
BstSFI	CTRYAG	2 cut(s)	99, 794
BstSLI	GKGCMC	1 cut(s)	463
BstV1I	GCAGC	3 cut(s)	30, 544, 659
BstV2I	GAAGAC	1 cut(s)	11
BstX2I	RGATCY	3 cut(s)	24, 52, 404
BstXI	CCANNNNNNTGG	1 cut(s)	35
BstYI	RGATCY	3 cut(s)	24, 52, 404
BsuI	GTATCC	1 cut(s)	371
BsuRI	GGCC	1 cut(s)	747
BtsCI	GGATG	2 cut(s)	112, 177
BveI	ACCTGC	1 cut(s)	604
Cac8I	GCNNGC	2 cut(s)	670, 730
Cfr13I	GGNCC	1 cut(s)	745
CseI	GACGC	1 cut(s)	485
Csp6I	GTAC	2 cut(s)	4, 790
CspCI	CAANNNNNGTGG	2 cut(s)	550, 585
CviAII	CATG	4 cut(s)	378, 409, 455, 611
CviQI	GTAC	2 cut(s)	4, 790
DdeI	CTNAG	1 cut(s)	651
DpnI	GATC	6 cut(s)	26, 54, 179, 400, 406, 424
DpnII	GATC	6 cut(s)	24, 52, 177, 398, 404, 422
DraI	TTTAAA	1 cut(s)	531
DriI	GACNNNNNGTC	1 cut(s)	481
Eam1104I	CTCTTC	1 cut(s)	131
Eam1105I	GACNNNNNGTC	1 cut(s)	481
EarI	CTCTTC	1 cut(s)	131
Eco32I	GATATC	1 cut(s)	354
Eco57I	CTGAAG	1 cut(s)	704
Eco88I	CYCGRG	1 cut(s)	118
EcoRI	GAATTC	1 cut(s)	692
EcoRV	GATATC	1 cut(s)	354
FaeI	CATG	4 cut(s)	381, 412, 458, 614
FaqI	GGGAC	1 cut(s)	632
FatI	CATG	4 cut(s)	377, 408, 454, 610
FbaI	TGATCA	1 cut(s)	177
FblI	GTMKAC	1 cut(s)	215
Fnu4HI	GCNGC	3 cut(s)	44, 558, 673
FokI	GGATG	2 cut(s)	119, 184
Fsp4HI	GCNGC	3 cut(s)	44, 558, 673
GluI	GCNGC	3 cut(s)	44, 558, 673
HaeIII	GGCC	1 cut(s)	747
HgaI	GACGC	1 cut(s)	485
Hin1I	GRCGYC	1 cut(s)	477
Hin1II	CATG	4 cut(s)	381, 412, 458, 614
HincII	GTYRAC	2 cut(s)	139, 475
HindII	GTYRAC	2 cut(s)	139, 475
HinfI	GANTC	5 cut(s)	16, 95, 194, 242, 572
HphI	GGTGA	1 cut(s)	460
Hpy166II	GTNNAC	4 cut(s)	139, 216, 461, 475
Hpy188I	TCNGA	2 cut(s)	24, 154
Hpy188III	TCNNGA	5 cut(s)	130, 198, 336, 402, 569
Hpy8I	GTNNAC	4 cut(s)	139, 216, 461, 475
HpyAV	CCTTC	3 cut(s)	123, 679, 735
HpyCH4III	ACNGT	1 cut(s)	136
HpyCH4IV	ACGT	1 cut(s)	6
HpyCH4V	TGCA	7 cut(s)	101, 232, 347, 377, 461, 732, 796
HpyF10VI	GCNNNNNNNGC	2 cut(s)	630, 729
HpyF3I	CTNAG	1 cut(s)	651
HpySE526I	ACGT	1 cut(s)	6
Hsp92I	GRCGYC	1 cut(s)	477
Hsp92II	CATG	4 cut(s)	381, 412, 458, 614
Ksp22I	TGATCA	1 cut(s)	177
Kzo9I	GATC	6 cut(s)	24, 52, 177, 398, 404, 422
LguI	GCTCTTC	1 cut(s)	131
LpnPI	CCDG	6 cut(s)	183, 387, 609, 655, 682, 742
Lsp1109I	GCAGC	3 cut(s)	30, 544, 659
LweI	GCATC	2 cut(s)	512, 544
MaeII	ACGT	1 cut(s)	6
MaeIII	GTNAC	1 cut(s)	383
MalI	GATC	6 cut(s)	26, 54, 179, 400, 406, 424
MboI	GATC	6 cut(s)	24, 52, 177, 398, 404, 422
MboII	GAAGA	4 cut(s)	11, 118, 617, 699
MflI	RGATCY	3 cut(s)	24, 52, 404
MhlI	GDGCHC	1 cut(s)	463
MluCI	AATT	4 cut(s)	81, 155, 525, 692
MlyI	GAGTC	1 cut(s)	25
MnlI	CCTC	8 cut(s)	97, 114, 127, 154, 250, 286, 291, 514
MseI	TTAA	3 cut(s)	9, 530, 717
Mva1269I	GAATGC	1 cut(s)	349
MwoI	GCNNNNNNNGC	2 cut(s)	630, 729
NdeII	GATC	6 cut(s)	24, 52, 177, 398, 404, 422
NlaIII	CATG	4 cut(s)	381, 412, 458, 614
NlaIV	GGNNCC	3 cut(s)	26, 406, 746
NspI	RCATGY	1 cut(s)	381
PaeR7I	CTCGAG	1 cut(s)	118
PciSI	GCTCTTC	1 cut(s)	131
PctI	GAATGC	1 cut(s)	349
PfeI	GAWTC	4 cut(s)	95, 194, 242, 572
PkrI	GCNGC	3 cut(s)	45, 559, 674
PleI	GAGTC	1 cut(s)	24
PpsI	GAGTC	1 cut(s)	24
PspN4I	GGNNCC	3 cut(s)	26, 406, 746
PspPI	GGNCC	1 cut(s)	745
PspXI	VCTCGAGB	1 cut(s)	118
PstI	CTGCAG	2 cut(s)	103, 798
PsuI	RGATCY	3 cut(s)	24, 52, 404
RsaI	GTAC	2 cut(s)	5, 791
RsaNI	GTAC	2 cut(s)	4, 790
SapI	GCTCTTC	1 cut(s)	131
SaqAI	TTAA	3 cut(s)	9, 530, 717
SatI	GCNGC	3 cut(s)	44, 558, 673
Sau3AI	GATC	6 cut(s)	24, 52, 177, 398, 404, 422
Sau96I	GGNCC	1 cut(s)	745
SchI	GAGTC	1 cut(s)	25
SduI	GDGCHC	1 cut(s)	463
SfaNI	GCATC	2 cut(s)	512, 544
SfcI	CTRYAG	2 cut(s)	99, 794
Sfr274I	CTCGAG	1 cut(s)	118
SlaI	CTCGAG	1 cut(s)	118
SmlI	CTYRAG	2 cut(s)	118, 145
SmoI	CTYRAG	2 cut(s)	118, 145
Sse9I	AATT	4 cut(s)	81, 155, 525, 692
SsiI	CCGC	1 cut(s)	364
TaaI	ACNGT	1 cut(s)	136
TaiI	ACGT	1 cut(s)	9
TaqI	TCGA	2 cut(s)	119, 696
TasI	AATT	4 cut(s)	81, 155, 525, 692
TfiI	GAWTC	4 cut(s)	95, 194, 242, 572
Tru1I	TTAA	3 cut(s)	9, 530, 717
Tru9I	TTAA	3 cut(s)	9, 530, 717
TseI	GCWGC	3 cut(s)	43, 557, 672
TspDTI	ATGAA	3 cut(s)	560, 627, 795
VneI	GTGCAC	1 cut(s)	459
XapI	RAATTY	4 cut(s)	81, 155, 525, 692
XceI	RCATGY	1 cut(s)	381
XhoI	CTCGAG	1 cut(s)	118
XmiI	GTMKAC	1 cut(s)	215

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.