Rmu_sc0004755.1_g000020

protein FAR1-RELATED SEQUENCE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004755.1
OG0000143
Physical Location & Seq
Reverse (-)
93000 .. 94379
1380 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004755.1_g000020.1.cds

Sequence Viewer

Length: 1236 bp
atgaagaatgagtttaaggtaatagtgggttttgtatcacatgctgccctagattatattttgggagagtctgagagaatcgatgttagtggaactaatgagaatgcatgtggttttactttgagaaaaacacatgggttgccatgtgcacatgagatgacaatttataaggagaatggcagccctattccactcgattgtgttcatcgtcattggaggaaattagatttgtttcattccccacaaagtaatgaccctataaatattccattgaagtcactagaggaaagattcatgacctggttacatgaaaaggacgatgacaccaagagacaggtaaagagaaagttagaggaaattatgaatccaggatgtaccctgcttacagaaccacatgcaaagatcaacacaaaaggacgtccaactaaagaagaagcctctactcgtcatatgttatcctcttttgagattgcattgtcaggtcaagatagtcattcacaaacaccaggtgtcgggagcgttataatgaaagctgcattgaagagaccaaataggagacgaccaaaagaggcaaaaggtaatattcaatcagcaaaattaactcctggaactgctagtactagtaagacaaccatgaagacaaagaaacgaccatccaaagtgggagaacatatcggtccttcactaattcccactggcaatattatgggtttaagaacaccaccaaggaaattagataagcgagcaccaaaattagcaaaagagactagggagtataatgactggtttcctcaagaaatgtggccatttttcttaggagccaatgatgtaaaggatgatggtaattgtggttttagagctatagctgagtttatggaatatggtgagaataattggcaccgtgtacgcaaggagttgttgcaagagtttcatcataataaggatgcatatcgattactattccgatatgttgagcgattggaggaggtggagaggagattagattattttgatgactttccacctgaagaacattggttcttaataccagatatgggatacattgtcgcaaattgttacaacgttgtgctgatgcattttggtttgcctttgatgtcttgttttaccttcttaccaatgaatagtatcccacttcctatagttgatcatcgtgaaatttcaattggttttgtcaaaagatgtcactttgtccaggtattctatacatgttgctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE

Protein Analysis

411

Amino Acids

47.43

Weight (kDa)

8.77

Isoelectric Point (pI)

45.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000143)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G76710 AT1G76710 AT1G76710 AT1G76710
fragaria_vesca FvH4_1g20063 FvH4_2g15231 FvH4_3g04011 FvH4_3g28681 FvH4_4g01411 FvH4_4g10181 FvH4_4g15922 FvH4_4g16651 FvH4_4g16652 FvH4_5g13892 FvH4_5g13893 FvH4_5g20623 FvH4_5g20623 FvH4_5g20623 FvH4_5g20623 FvH4_5g25511 FvH4_6g12551 FvH4_6g12552 FvH4_6g38841 FvH4_7g04391
malus_domestica MD05G1031300.v1.1 MD05G1031400.v1.1 MD05G1031500.v1.1 MD08G1164400.v1.1 MD10G1032900.v1.1 MD10G1033000.v1.1 MD10G1033100.v1.1
prunus_persica Prupe.3G240700_v2.0.a1 Prupe.7G144600_v2.0.a1 Prupe.8G038500_v2.0.a1 Prupe.8G038500_v2.0.a1
pyrus_communis pycom05g02250 pycom05g02260 pycom05g02270 pycom05g02280 pycom08g14160 pycom10g02100 pycom10g02110 pycom10g02130
rosa_chinensis RchiOBHm_Chr1g0329481 RchiOBHm_Chr1g0329491 RchiOBHm_Chr1g0341531 RchiOBHm_Chr3g0464811 RchiOBHm_Chr3g0494701 RchiOBHm_Chr3g0497501 RchiOBHm_Chr4g0385841 RchiOBHm_Chr5g0061181 RchiOBHm_Chr6g0263001 RchiOBHm_Chr7g0193111 RchiOBHm_Chr7g0206281 RchiOBHm_Chr7g0206311
rosa_laevigata RLG00000018908 RLG00000028528 RLG00000028803 RLG00000029882 RLG00000029883 RLG00000030361
rosa_multiflora Rmu_co8196328.1_g000001 Rmu_co8259135.1_g000001 Rmu_co8269185.1_g000001 Rmu_sc0000076.1_g000019 Rmu_sc0000311.1_g000007 Rmu_sc0000429.1_g000038 Rmu_sc0000429.1_g000039 Rmu_sc0000429.1_g000040 Rmu_sc0000511.1_g000005 Rmu_sc0000539.1_g000054 Rmu_sc0000566.1_g000039 Rmu_sc0000805.1_g000032 Rmu_sc0000870.1_g000073 Rmu_sc0000870.1_g000074 Rmu_sc0001010.1_g000018 Rmu_sc0001083.1_g000013 Rmu_sc0001114.1_g000011 Rmu_sc0001702.1_g000027 Rmu_sc0001779.1_g000012 Rmu_sc0002923.1_g000036 Rmu_sc0003242.1_g000011 Rmu_sc0003291.1_g000036 Rmu_sc0003393.1_g000012 Rmu_sc0003872.1_g000016 Rmu_sc0003872.1_g000017 Rmu_sc0003872.1_g000018 Rmu_sc0004084.1_g000020 Rmu_sc0004386.1_g000005 Rmu_sc0004622.1_g000005 Rmu_sc0004742.1_g000021 Rmu_sc0004755.1_g000020 Rmu_sc0004805.1_g000036 Rmu_sc0005065.1_g000006 Rmu_sc0005177.1_g000004 Rmu_sc0006373.1_g000003 Rmu_sc0006373.1_g000004 Rmu_sc0007121.1_g000002 Rmu_sc0007943.1_g000003 Rmu_sc0010368.1_g000006 Rmu_sc0010543.1_g000001 Rmu_sc0012591.1_g000006 Rmu_sc0013504.1_g000009 Rmu_sc0015025.1_g000001 Rmu_sc0016170.1_g000001 Rmu_sc0017156.1_g000001 Rmu_sc0026439.1_g000001
rosa_roxburghii Rroxscaffold_175G00432280 Rroxscaffold_1G00030190 Rroxscaffold_1G00030880 Rroxscaffold_2G00090520 Rroxscaffold_3G00227940 Rroxscaffold_3G00233400 Rroxscaffold_3G00238500 Rroxscaffold_3G00251650 Rroxscaffold_4G00301570 Rroxscaffold_4G00321040 Rroxscaffold_5G00350880 Rroxscaffold_7G00184400
rosa_rugosa Rorug01G0080800 Rorug01G0080900 Rorug01G0193900 Rorug02G0275900 Rorug02G0275900 Rorug02G0275900 Rorug02G0305400 Rorug02G0311800 Rorug02G0350400 Rorug02G0381300 Rorug03G0136700 Rorug03G0181900 Rorug03G0268000 Rorug04G0301600 Rorug05G0175100 Rorug05G0250700 Rorug05G0298200 Rorug05G0596000 Rorug06G0029500 Rorug07G0094300 Rorug07G0094300 Rorug07G0095400 Rorug07G0140100
rosa_samantha Rh1AG099200 Rh1AG190500 Rh1BG078900 Rh1BG079000 Rh1BG079100 Rh1CG084600 Rh1CG084700 Rh1CG095300 Rh1CG175900 Rh1DG103300 Rh1DG150400 Rh2AG079300 Rh2AG272400 Rh2AG464800 Rh2AG507400 Rh2DG078300 Rh2DG078400 Rh3CG206900 Rh3CG295400 Rh3DG206800 Rh3DG356200 Rh4CG071500 Rh4CG179200 Rh4DG064700 Rh5CG362400 Rh7AG212300 Rh7AG226200 Rh7BG222200
rosa_wichuraiana Rw0G009990 Rw0G011260 Rw0G011270 Rw0G012910 Rw0G013740 Rw1G007740 Rw1G013050 Rw1G014230 Rw2G014270 Rw3G012720 Rw3G028110 Rw4G006630 Rw4G015270 Rw4G016160 Rw4G031380 Rw5G011440 Rw5G029180 Rw5G048360 Rw5G048430 Rw5G048780 Rw6G005250 Rw6G006390 Rw7G002840 Rw7G014080 Rw7G019650 Rw7G032790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 168, 524
AatII GACGTC 1 cut(s) 421
AccB1I GGYRCC 1 cut(s) 897
AclI AACGTT 1 cut(s) 1083
AcoI YGGCCR 1 cut(s) 803
AcsI RAATTY 1 cut(s) 1176
AcuI CTGAAG 1 cut(s) 1047
AcyI GRCGYC 1 cut(s) 418
AdeI CACNNNGTG 1 cut(s) 509
AfaI GTAC 3 cut(s) 376, 619, 906
AfiI CCNNNNNNNGG 2 cut(s) 512, 1055
AflIII ACRYGT 1 cut(s) 1226
AgsI TTSAA 4 cut(s) 274, 541, 587, 1182
AhlI ACTAGT 1 cut(s) 620
AjnI CCWGG 5 cut(s) 299, 367, 505, 604, 1212
AjuI GAANNNNNNNTTGG 2 cut(s) 1167, 1199
AluBI AGCT 3 cut(s) 533, 860, 866
AluI AGCT 3 cut(s) 533, 860, 866
Alw21I GWGCWC 2 cut(s) 151, 748
Alw26I GTCTC 4 cut(s) 325, 538, 550, 758
Alw44I GTGCAC 1 cut(s) 147
AoxI GGCC 1 cut(s) 803
ApaLI GTGCAC 1 cut(s) 147
ApeKI GCWGC 3 cut(s) 44, 180, 533
ApoI RAATTY 1 cut(s) 1176
AspS9I GGNCC 1 cut(s) 677
AsuHPI GGTGA 1 cut(s) 896
AvaII GGWCC 1 cut(s) 677
BaeGI GKGCMC 1 cut(s) 151
BalI TGGCCA 1 cut(s) 805
BanI GGYRCC 1 cut(s) 897
BbsI GAAGAC 1 cut(s) 644
Bbv12I GWGCWC 2 cut(s) 151, 748
BbvI GCAGC 3 cut(s) 31, 192, 520
BccI CCATC 2 cut(s) 661, 833
BciT130I CCWGG 5 cut(s) 301, 369, 507, 606, 1214
BciVI GTATCC 2 cut(s) 1052, 1157
BclI TGATCA 1 cut(s) 1165
BcoDI GTCTC 4 cut(s) 325, 538, 550, 758
BcuI ACTAGT 1 cut(s) 620
BfaI CTAG 5 cut(s) 50, 281, 615, 621, 768
BfmI CTRYAG 2 cut(s) 861, 1158
BfuI GTATCC 2 cut(s) 1052, 1157
BisI GCNGC 3 cut(s) 45, 181, 534
BlsI GCNGC 3 cut(s) 46, 182, 535
BmcAI AGTACT 1 cut(s) 619
Bme1390I CCNGG 5 cut(s) 301, 369, 507, 606, 1214
Bme18I GGWCC 1 cut(s) 677
BmgT120I GGNCC 1 cut(s) 677
BmiI GGNNCC 2 cut(s) 820, 899
BmrFI CCNGG 5 cut(s) 301, 369, 507, 606, 1214
BmsI GCATC 2 cut(s) 934, 1083
BpiI GAAGAC 1 cut(s) 644
BpuEI CTTGAG 1 cut(s) 777
Bsa29I ATCGAT 2 cut(s) 81, 952
BsaBI GATNNNNATC 1 cut(s) 948
BsaHI GRCGYC 1 cut(s) 418
BsaI GGTCTC 1 cut(s) 538
BsaJI CCNNGG 1 cut(s) 725
Bsc4I CCNNNNNNNGG 2 cut(s) 512, 1055
Bse1I ACTGG 2 cut(s) 700, 788
Bse8I GATNNNNATC 1 cut(s) 948
BseBI CCWGG 5 cut(s) 301, 369, 507, 606, 1214
BseCI ATCGAT 2 cut(s) 81, 952
BseDI CCNNGG 1 cut(s) 725
BseGI GGATG 4 cut(s) 377, 653, 841, 949
BseJI GATNNNNATC 1 cut(s) 948
BseLI CCNNNNNNNGG 2 cut(s) 512, 1055
BseMII CTCAG 2 cut(s) 63, 858
BseNI ACTGG 2 cut(s) 700, 788
BseRI GAGGAG 2 cut(s) 998, 1009
BseSI GKGCMC 1 cut(s) 151
BseXI GCAGC 3 cut(s) 31, 192, 520
BshFI GGCC 1 cut(s) 805
BshNI GGYRCC 1 cut(s) 897
BshVI ATCGAT 2 cut(s) 81, 952
BsiHKAI GWGCWC 2 cut(s) 151, 748
BslI CCNNNNNNNGG 2 cut(s) 512, 1055
BsmAI GTCTC 4 cut(s) 325, 538, 550, 758
BsmBI CGTCTC 1 cut(s) 550
BsmI GAATGC 1 cut(s) 109
BsnI GGCC 1 cut(s) 805
Bso31I GGTCTC 1 cut(s) 538
Bsp1286I GDGCHC 2 cut(s) 151, 748
Bsp143I GATC 2 cut(s) 402, 1165
BspANI GGCC 1 cut(s) 805
BspCNI CTCAG 2 cut(s) 64, 859
BspDI ATCGAT 2 cut(s) 81, 952
BspHI TCATGA 1 cut(s) 294
BspLI GGNNCC 2 cut(s) 820, 899
BspT107I GGYRCC 1 cut(s) 897
BspTNI GGTCTC 1 cut(s) 538
BsrI ACTGG 2 cut(s) 700, 788
BssECI CCNNGG 1 cut(s) 725
BssMI GATC 2 cut(s) 402, 1165
BssNI GRCGYC 1 cut(s) 418
BssT1I CCWWGG 1 cut(s) 725
Bst2UI CCWGG 5 cut(s) 301, 369, 507, 606, 1214
Bst4CI ACNGT 1 cut(s) 902
Bst6I CTCTTC 1 cut(s) 536
BstACI GRCGYC 1 cut(s) 418
BstC8I GCNNGC 1 cut(s) 744
BstDEI CTNAG 3 cut(s) 72, 814, 867
BstF5I GGATG 4 cut(s) 377, 653, 841, 949
BstKTI GATC 2 cut(s) 405, 1168
BstMAI GTCTC 4 cut(s) 325, 538, 550, 758
BstMBI GATC 2 cut(s) 402, 1165
BstNI CCWGG 5 cut(s) 301, 369, 507, 606, 1214
BstNSI RCATGY 4 cut(s) 44, 111, 398, 1230
BstSCI CCNGG 5 cut(s) 299, 367, 505, 604, 1212
BstSFI CTRYAG 2 cut(s) 861, 1158
BstSLI GKGCMC 1 cut(s) 151
BstV1I GCAGC 3 cut(s) 31, 192, 520
BstV2I GAAGAC 1 cut(s) 644
Bsu15I ATCGAT 2 cut(s) 81, 952
BsuI GTATCC 2 cut(s) 1052, 1157
BsuRI GGCC 1 cut(s) 805
BsuTUI ATCGAT 2 cut(s) 81, 952
BtsCI GGATG 4 cut(s) 377, 653, 841, 949
BtsIMutI CAGTG 1 cut(s) 693
Cac8I GCNNGC 1 cut(s) 744
CciI TCATGA 1 cut(s) 294
Cfr13I GGNCC 1 cut(s) 677
ClaI ATCGAT 2 cut(s) 81, 952
CsiI ACCWGGT 2 cut(s) 299, 505
Csp6I GTAC 3 cut(s) 375, 618, 905
CspCI CAANNNNNGTGG 2 cut(s) 782, 817
CviJI RGCY 7 cut(s) 183, 437, 533, 805, 821, 860, 866
CviKI_1 RGCY 7 cut(s) 183, 437, 533, 805, 821, 860, 866
CviQI GTAC 3 cut(s) 375, 618, 905
DdeI CTNAG 3 cut(s) 72, 814, 867
DpnI GATC 2 cut(s) 404, 1167
DpnII GATC 2 cut(s) 402, 1165
DraIII CACNNNGTG 1 cut(s) 509
EaeI YGGCCR 1 cut(s) 803
Eam1104I CTCTTC 1 cut(s) 536
EarI CTCTTC 1 cut(s) 536
Eco130I CCWWGG 1 cut(s) 725
Eco31I GGTCTC 1 cut(s) 538
Eco47I GGWCC 1 cut(s) 677
Eco57I CTGAAG 1 cut(s) 1047
EcoRII CCWGG 5 cut(s) 299, 367, 505, 604, 1212
EcoT14I CCWWGG 1 cut(s) 725
EcoT22I ATGCAT 3 cut(s) 109, 949, 1098
ErhI CCWWGG 1 cut(s) 725
Esp3I CGTCTC 1 cut(s) 550
FauNDI CATATG 1 cut(s) 450
FbaI TGATCA 1 cut(s) 1165
Fnu4HI GCNGC 3 cut(s) 45, 181, 534
FokI GGATG 4 cut(s) 384, 640, 848, 956
Fsp4HI GCNGC 3 cut(s) 45, 181, 534
FspBI CTAG 5 cut(s) 50, 281, 615, 621, 768
GluI GCNGC 3 cut(s) 45, 181, 534
HaeIII GGCC 1 cut(s) 805
Hin1I GRCGYC 1 cut(s) 418
HinfI GANTC 4 cut(s) 68, 78, 291, 364
HphI GGTGA 1 cut(s) 896
Hpy166II GTNNAC 2 cut(s) 149, 905
Hpy188I TCNGA 2 cut(s) 73, 965
Hpy188III TCNNGA 5 cut(s) 295, 485, 514, 794, 1172
Hpy8I GTNNAC 2 cut(s) 149, 905
HpyAV CCTTC 2 cut(s) 690, 1138
HpyCH4III ACNGT 1 cut(s) 902
HpyCH4IV ACGT 2 cut(s) 418, 1083
HpyCH4V TGCA 8 cut(s) 107, 149, 398, 473, 536, 922, 947, 1096
HpyF3I CTNAG 3 cut(s) 72, 814, 867
HpySE526I ACGT 2 cut(s) 418, 1083
Hsp92I GRCGYC 1 cut(s) 418
Ksp22I TGATCA 1 cut(s) 1165
Kzo9I GATC 2 cut(s) 402, 1165
LmnI GCTCC 2 cut(s) 516, 818
Lsp1109I GCAGC 3 cut(s) 31, 192, 520
LweI GCATC 2 cut(s) 934, 1083
MabI ACCWGGT 2 cut(s) 299, 505
MaeI CTAG 5 cut(s) 50, 281, 615, 621, 768
MaeII ACGT 2 cut(s) 418, 1083
MaeIII GTNAC 4 cut(s) 276, 303, 1076, 1202
MalI GATC 2 cut(s) 404, 1167
MboI GATC 2 cut(s) 402, 1165
MboII GAAGA 5 cut(s) 16, 443, 553, 649, 1040
MfeI CAATTG 1 cut(s) 1182
MhlI GDGCHC 2 cut(s) 151, 748
MlsI TGGCCA 1 cut(s) 805
MluNI TGGCCA 1 cut(s) 805
MlyI GAGTC 1 cut(s) 77
MmeI TCCRAC 1 cut(s) 446
Mox20I TGGCCA 1 cut(s) 805
Mph1103I ATGCAT 3 cut(s) 109, 949, 1098
MscI TGGCCA 1 cut(s) 805
MseI TTAA 4 cut(s) 15, 599, 713, 1043
Msp20I TGGCCA 1 cut(s) 805
MspR9I CCNGG 5 cut(s) 301, 369, 507, 606, 1214
MunI CAATTG 1 cut(s) 1182
Mva1269I GAATGC 1 cut(s) 109
MvaI CCWGG 5 cut(s) 301, 369, 507, 606, 1214
NdeI CATATG 1 cut(s) 450
NdeII GATC 2 cut(s) 402, 1165
NlaIV GGNNCC 2 cut(s) 820, 899
NmuCI GTSAC 2 cut(s) 276, 1202
NsiI ATGCAT 3 cut(s) 109, 949, 1098
NspI RCATGY 4 cut(s) 44, 111, 398, 1230
PagI TCATGA 1 cut(s) 294
PciI ACATGT 1 cut(s) 1226
PctI GAATGC 1 cut(s) 109
PfeI GAWTC 3 cut(s) 78, 291, 364
PfoI TCCNGGA 2 cut(s) 367, 604
PkrI GCNGC 3 cut(s) 46, 182, 535
PleI GAGTC 1 cut(s) 76
PpsI GAGTC 1 cut(s) 76
PscI ACATGT 1 cut(s) 1226
PsiI TTATAA 2 cut(s) 168, 524
Psp1406I AACGTT 1 cut(s) 1083
Psp6I CCWGG 5 cut(s) 299, 367, 505, 604, 1212
PspGI CCWGG 5 cut(s) 299, 367, 505, 604, 1212
PspN4I GGNNCC 2 cut(s) 820, 899
PspPI GGNCC 1 cut(s) 677
PsrI GAACNNNNNNTAC 2 cut(s) 601, 633
RsaI GTAC 3 cut(s) 376, 619, 906
RsaNI GTAC 3 cut(s) 375, 618, 905
SaqAI TTAA 4 cut(s) 15, 599, 713, 1043
SatI GCNGC 3 cut(s) 45, 181, 534
Sau3AI GATC 2 cut(s) 402, 1165
Sau96I GGNCC 1 cut(s) 677
ScaI AGTACT 1 cut(s) 619
SchI GAGTC 1 cut(s) 77
ScrFI CCNGG 5 cut(s) 301, 369, 507, 606, 1214
SduI GDGCHC 2 cut(s) 151, 748
SexAI ACCWGGT 2 cut(s) 299, 505
SfaNI GCATC 2 cut(s) 934, 1083
SfcI CTRYAG 2 cut(s) 861, 1158
SinI GGWCC 1 cut(s) 677
SmlI CTYRAG 1 cut(s) 792
SmoI CTYRAG 1 cut(s) 792
SpeI ACTAGT 1 cut(s) 620
SspI AATATT 3 cut(s) 265, 583, 703
SspMI CTAG 5 cut(s) 50, 281, 615, 621, 768
StyD4I CCNGG 5 cut(s) 299, 367, 505, 604, 1212
StyI CCWWGG 1 cut(s) 725
TaaI ACNGT 1 cut(s) 902
TaiI ACGT 2 cut(s) 421, 1086
TaqI TCGA 3 cut(s) 81, 195, 952
TaqII GACCGA 1 cut(s) 665
TatI WGTACW 1 cut(s) 617
TfiI GAWTC 3 cut(s) 78, 291, 364
Tru1I TTAA 4 cut(s) 15, 599, 713, 1043
Tru9I TTAA 4 cut(s) 15, 599, 713, 1043
TscAI CASTG 1 cut(s) 700
TseFI GTSAC 2 cut(s) 276, 1202
TseI GCWGC 3 cut(s) 44, 180, 533
Tsp45I GTSAC 2 cut(s) 276, 1202
TspRI CASTG 1 cut(s) 700
VneI GTGCAC 1 cut(s) 147
VpaK11BI GGWCC 1 cut(s) 677
XapI RAATTY 1 cut(s) 1176
XceI RCATGY 4 cut(s) 44, 111, 398, 1230
XspI CTAG 5 cut(s) 50, 281, 615, 621, 768
ZraI GACGTC 1 cut(s) 419
ZrmI AGTACT 1 cut(s) 619
Zsp2I ATGCAT 3 cut(s) 109, 949, 1098
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.