Rroxscaffold_2G00090520

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000143
Physical Location & Seq
Reverse (-)
12251323 .. 12253403
2081 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00090520.1

Sequence Viewer

Length: 171 bp
ATGGAAGAAGAGCCCGGGCATGCCGAGTTGCAAAAGATTCCTATAAATTTGGTGCCCTCGGATGATATCGAAGAGTTACAATTCAATCATCCGTCTAGTATCATTGAAGACCTCATTGTCAATGCAGGGAGGAGCTTGGCCATGTTGGGATGGATTGGCGCGTTTCGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

56

Amino Acids

6.24

Weight (kDa)

4.35

Isoelectric Point (pI)

78.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000143)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G76710 AT1G76710 AT1G76710 AT1G76710
fragaria_vesca FvH4_1g20063 FvH4_2g15231 FvH4_3g04011 FvH4_3g28681 FvH4_4g01411 FvH4_4g10181 FvH4_4g15922 FvH4_4g16651 FvH4_4g16652 FvH4_5g13892 FvH4_5g13893 FvH4_5g20623 FvH4_5g20623 FvH4_5g20623 FvH4_5g20623 FvH4_5g25511 FvH4_6g12551 FvH4_6g12552 FvH4_6g38841 FvH4_7g04391
malus_domestica MD05G1031300.v1.1 MD05G1031400.v1.1 MD05G1031500.v1.1 MD08G1164400.v1.1 MD10G1032900.v1.1 MD10G1033000.v1.1 MD10G1033100.v1.1
prunus_persica Prupe.3G240700_v2.0.a1 Prupe.7G144600_v2.0.a1 Prupe.8G038500_v2.0.a1 Prupe.8G038500_v2.0.a1
pyrus_communis pycom05g02250 pycom05g02260 pycom05g02270 pycom05g02280 pycom08g14160 pycom10g02100 pycom10g02110 pycom10g02130
rosa_chinensis RchiOBHm_Chr1g0329481 RchiOBHm_Chr1g0329491 RchiOBHm_Chr1g0341531 RchiOBHm_Chr3g0464811 RchiOBHm_Chr3g0494701 RchiOBHm_Chr3g0497501 RchiOBHm_Chr4g0385841 RchiOBHm_Chr5g0061181 RchiOBHm_Chr6g0263001 RchiOBHm_Chr7g0193111 RchiOBHm_Chr7g0206281 RchiOBHm_Chr7g0206311
rosa_laevigata RLG00000018908 RLG00000028528 RLG00000028803 RLG00000029882 RLG00000029883 RLG00000030361
rosa_multiflora Rmu_co8196328.1_g000001 Rmu_co8259135.1_g000001 Rmu_co8269185.1_g000001 Rmu_sc0000076.1_g000019 Rmu_sc0000311.1_g000007 Rmu_sc0000429.1_g000038 Rmu_sc0000429.1_g000039 Rmu_sc0000429.1_g000040 Rmu_sc0000511.1_g000005 Rmu_sc0000539.1_g000054 Rmu_sc0000566.1_g000039 Rmu_sc0000805.1_g000032 Rmu_sc0000870.1_g000073 Rmu_sc0000870.1_g000074 Rmu_sc0001010.1_g000018 Rmu_sc0001083.1_g000013 Rmu_sc0001114.1_g000011 Rmu_sc0001702.1_g000027 Rmu_sc0001779.1_g000012 Rmu_sc0002923.1_g000036 Rmu_sc0003242.1_g000011 Rmu_sc0003291.1_g000036 Rmu_sc0003393.1_g000012 Rmu_sc0003872.1_g000016 Rmu_sc0003872.1_g000017 Rmu_sc0003872.1_g000018 Rmu_sc0004084.1_g000020 Rmu_sc0004386.1_g000005 Rmu_sc0004622.1_g000005 Rmu_sc0004742.1_g000021 Rmu_sc0004755.1_g000020 Rmu_sc0004805.1_g000036 Rmu_sc0005065.1_g000006 Rmu_sc0005177.1_g000004 Rmu_sc0006373.1_g000003 Rmu_sc0006373.1_g000004 Rmu_sc0007121.1_g000002 Rmu_sc0007943.1_g000003 Rmu_sc0010368.1_g000006 Rmu_sc0010543.1_g000001 Rmu_sc0012591.1_g000006 Rmu_sc0013504.1_g000009 Rmu_sc0015025.1_g000001 Rmu_sc0016170.1_g000001 Rmu_sc0017156.1_g000001 Rmu_sc0026439.1_g000001
rosa_roxburghii Rroxscaffold_175G00432280 Rroxscaffold_1G00030190 Rroxscaffold_1G00030880 Rroxscaffold_2G00090520 Rroxscaffold_3G00227940 Rroxscaffold_3G00233400 Rroxscaffold_3G00238500 Rroxscaffold_3G00251650 Rroxscaffold_4G00301570 Rroxscaffold_4G00321040 Rroxscaffold_5G00350880 Rroxscaffold_7G00184400
rosa_rugosa Rorug01G0080800 Rorug01G0080900 Rorug01G0193900 Rorug02G0275900 Rorug02G0275900 Rorug02G0275900 Rorug02G0305400 Rorug02G0311800 Rorug02G0350400 Rorug02G0381300 Rorug03G0136700 Rorug03G0181900 Rorug03G0268000 Rorug04G0301600 Rorug05G0175100 Rorug05G0250700 Rorug05G0298200 Rorug05G0596000 Rorug06G0029500 Rorug07G0094300 Rorug07G0094300 Rorug07G0095400 Rorug07G0140100
rosa_samantha Rh1AG099200 Rh1AG190500 Rh1BG078900 Rh1BG079000 Rh1BG079100 Rh1CG084600 Rh1CG084700 Rh1CG095300 Rh1CG175900 Rh1DG103300 Rh1DG150400 Rh2AG079300 Rh2AG272400 Rh2AG464800 Rh2AG507400 Rh2DG078300 Rh2DG078400 Rh3CG206900 Rh3CG295400 Rh3DG206800 Rh3DG356200 Rh4CG071500 Rh4CG179200 Rh4DG064700 Rh5CG362400 Rh7AG212300 Rh7AG226200 Rh7BG222200
rosa_wichuraiana Rw0G009990 Rw0G011260 Rw0G011270 Rw0G012910 Rw0G013740 Rw1G007740 Rw1G013050 Rw1G014230 Rw2G014270 Rw3G012720 Rw3G028110 Rw4G006630 Rw4G015270 Rw4G016160 Rw4G031380 Rw5G011440 Rw5G029180 Rw5G048360 Rw5G048430 Rw5G048780 Rw6G005250 Rw6G006390 Rw7G002840 Rw7G014080 Rw7G019650 Rw7G032790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 116
AccB1I GGYRCC 1 cut(s) 52
AccII CGCG 1 cut(s) 161
AcoI YGGCCR 1 cut(s) 138
AcsI RAATTY 1 cut(s) 46
AgsI TTSAA 2 cut(s) 85, 107
AluBI AGCT 1 cut(s) 135
AluI AGCT 1 cut(s) 135
Ama87I CYCGRG 1 cut(s) 14
AoxI GGCC 1 cut(s) 138
ApoI RAATTY 1 cut(s) 46
AspLEI GCGC 1 cut(s) 161
AsuC2I CCSGG 2 cut(s) 15, 16
AvaI CYCGRG 1 cut(s) 14
BaeGI GKGCMC 1 cut(s) 57
BalI TGGCCA 1 cut(s) 140
BanI GGYRCC 1 cut(s) 52
BanII GRGCYC 1 cut(s) 15
BbsI GAAGAC 1 cut(s) 114
BccI CCATC 1 cut(s) 144
BcnI CCSGG 2 cut(s) 15, 16
BfaI CTAG 1 cut(s) 96
Bme1390I CCNGG 2 cut(s) 15, 16
BmeT110I CYCGRG 1 cut(s) 14
BmiI GGNNCC 1 cut(s) 54
BmrFI CCNGG 2 cut(s) 15, 16
BpiI GAAGAC 1 cut(s) 114
BpuMI CCSGG 2 cut(s) 15, 16
BsaJI CCNNGG 2 cut(s) 14, 57
BseDI CCNNGG 2 cut(s) 14, 57
BseGI GGATG 3 cut(s) 67, 88, 155
BseRI GAGGAG 1 cut(s) 145
BseSI GKGCMC 1 cut(s) 57
Bsh1236I CGCG 1 cut(s) 161
BshFI GGCC 1 cut(s) 140
BshNI GGYRCC 1 cut(s) 52
BsiHKCI CYCGRG 1 cut(s) 14
BsiSI CCGG 1 cut(s) 15
BsnI GGCC 1 cut(s) 140
BsoBI CYCGRG 1 cut(s) 14
Bsp1286I GDGCHC 2 cut(s) 15, 57
BspANI GGCC 1 cut(s) 140
BspFNI CGCG 1 cut(s) 161
BspLI GGNNCC 1 cut(s) 54
BspQI GCTCTTC 1 cut(s) 3
BspT107I GGYRCC 1 cut(s) 52
BssECI CCNNGG 2 cut(s) 14, 57
Bst6I CTCTTC 2 cut(s) 3, 66
BstC8I GCNNGC 1 cut(s) 21
BstF5I GGATG 3 cut(s) 67, 88, 155
BstFNI CGCG 1 cut(s) 161
BstHHI GCGC 1 cut(s) 161
BstNSI RCATGY 1 cut(s) 23
BstSCI CCNGG 2 cut(s) 13, 14
BstSLI GKGCMC 1 cut(s) 57
BstUI CGCG 1 cut(s) 161
BstV2I GAAGAC 1 cut(s) 114
BsuRI GGCC 1 cut(s) 140
BtsCI GGATG 3 cut(s) 67, 88, 155
Cac8I GCNNGC 1 cut(s) 21
CfoI GCGC 1 cut(s) 161
Cfr9I CCCGGG 1 cut(s) 14
CviAII CATG 2 cut(s) 20, 142
CviJI RGCY 3 cut(s) 13, 135, 140
CviKI_1 RGCY 3 cut(s) 13, 135, 140
DrdI GACNNNNNNGTC 1 cut(s) 116
DseDI GACNNNNNNGTC 1 cut(s) 116
EaeI YGGCCR 1 cut(s) 138
Eam1104I CTCTTC 2 cut(s) 3, 66
EarI CTCTTC 2 cut(s) 3, 66
Eco24I GRGCYC 1 cut(s) 15
Eco32I GATATC 1 cut(s) 67
Eco88I CYCGRG 1 cut(s) 14
EcoRV GATATC 1 cut(s) 67
EcoT38I GRGCYC 1 cut(s) 15
FaeI CATG 2 cut(s) 23, 145
FaiI YATR 3 cut(s) 21, 44, 143
FatI CATG 2 cut(s) 19, 141
FokI GGATG 3 cut(s) 74, 75, 162
FriOI GRGCYC 1 cut(s) 15
FspBI CTAG 1 cut(s) 96
GlaI GCGC 1 cut(s) 160
HaeIII GGCC 1 cut(s) 140
HapII CCGG 1 cut(s) 15
HhaI GCGC 1 cut(s) 161
Hin1II CATG 2 cut(s) 23, 145
Hin6I GCGC 1 cut(s) 159
HinP1I GCGC 1 cut(s) 159
HinfI GANTC 1 cut(s) 37
HpaII CCGG 1 cut(s) 15
Hpy188I TCNGA 1 cut(s) 61
HpyCH4V TGCA 2 cut(s) 31, 125
Hsp92II CATG 2 cut(s) 23, 145
HspAI GCGC 1 cut(s) 159
LguI GCTCTTC 1 cut(s) 3
LmnI GCTCC 1 cut(s) 132
LpnPI CCDG 2 cut(s) 28, 111
MaeI CTAG 1 cut(s) 96
MaeIII GTNAC 1 cut(s) 75
MboII GAAGA 4 cut(s) 17, 20, 83, 119
MhlI GDGCHC 2 cut(s) 15, 57
MlsI TGGCCA 1 cut(s) 140
MluCI AATT 2 cut(s) 46, 80
MluNI TGGCCA 1 cut(s) 140
MnlI CCTC 3 cut(s) 67, 122, 123
Mox20I TGGCCA 1 cut(s) 140
MscI TGGCCA 1 cut(s) 140
Msp20I TGGCCA 1 cut(s) 140
MspI CCGG 1 cut(s) 15
MspR9I CCNGG 2 cut(s) 15, 16
MvnI CGCG 1 cut(s) 161
NciI CCSGG 2 cut(s) 15, 16
NlaIII CATG 2 cut(s) 23, 145
NlaIV GGNNCC 1 cut(s) 54
NmeAIII GCCGAG 1 cut(s) 49
NspI RCATGY 1 cut(s) 23
PaeI GCATGC 1 cut(s) 23
PciSI GCTCTTC 1 cut(s) 3
PfeI GAWTC 1 cut(s) 37
PspN4I GGNNCC 1 cut(s) 54
SapI GCTCTTC 1 cut(s) 3
ScrFI CCNGG 2 cut(s) 15, 16
SduI GDGCHC 2 cut(s) 15, 57
SetI ASST 2 cut(s) 114, 137
SmaI CCCGGG 1 cut(s) 16
SphI GCATGC 1 cut(s) 23
SrfI GCCCGGGC 1 cut(s) 16
Sse9I AATT 2 cut(s) 46, 80
SspMI CTAG 1 cut(s) 96
StyD4I CCNGG 2 cut(s) 13, 14
TaqI TCGA 1 cut(s) 69
TasI AATT 2 cut(s) 46, 80
TfiI GAWTC 1 cut(s) 37
TspGWI ACGGA 1 cut(s) 81
TspMI CCCGGG 1 cut(s) 14
XapI RAATTY 1 cut(s) 46
XceI RCATGY 1 cut(s) 23
XmaI CCCGGG 1 cut(s) 14
XspI CTAG 1 cut(s) 96
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.