Rw0G011270

protein FAR1-RELATED SEQUENCE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00489
OG0000143
Physical Location & Seq
Forward (+)
37319 .. 38537
1219 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G011270.1

Sequence Viewer

Length: 1164 bp
ATGCCATTACTTGAGATTGTTGGAGTGACGAGCTTCAACAAATCATTTTATTCATGTTTTGTTTTCATGCAAAAAGAAGAACAAGAGGATTATGAGTGGGCCCTTGAAATGTTCAGTAAGTTATTGGGTTTTGGTAGTCGTCCATTGGCGATAATAACTGATAGGGAGTTGGCGTTAATGAAAGCAATACAAGTTGTGTTCCCGATGACTTTTAATCTAATCTGCATATGGCATATTGAGAAAAATATTCTTGCACATTGTAAGGGTCAGTTTAAAGAAGATACAGATTGGGTTGCTTTTATATCTTCTTGGACCACCTTAGTAAAATCTTGGGACGTGCCAACATTTAATGAAGCTTGGAATCGTTTTCAAATTGAGTACAAAGACTATGCTTCAGTTCTGACTTACATTGGAAATACTTGGCTTCCATGGAAAGAGAGGTTTGTATTTGCATGGACAGGGCAGATTTCACATTTTGGTAATAATGTTACTTCTAGGGCAGAAGGTGCACATGCAACTTTAAAGAAATATCTTCAAGTTTCAACTGGTGGTCTTCGTGAAGTGAAGGAAAATATTTGTCTTGCCATTGAAAATCAATTTCAGGAAATTAAAACACAACTTGCAAGTGAAAAGATTCGTGTTCCTCAAAAGCTTTGCATCCCTTTCTTTAAAGAGGTTGTTCATAAGGTCTCTTTCTATGCTTTGTATGAGTTACAAAAGCAATACTTGTTGGCAAATACAAAAGACTATTCATCTCAATGTAAGAGCCAATTTTCCAAAACCATGGGTCTTCCGTGTGTGCACATGATCAAGGAGATGAATATTGAAGTGCTGCCTCTAAATCAAATTCATATGCAATGGAGAATTGACACAAGATCTTTCACTAATGATCATCATGCAAGCTTGGATCATGAAGATCCTTTAACTACTCTTTTATCTGAGATTAAAGAGAAGTATGAAAAACAGCCGATTATGCAAAAAGAAAATACCATAAGGCAGCTTTCTCAAGTACTTGGTGCATCTTGTCCCTTAATTTTTGAACCTACTATTCAGCCTCATAAAGGTCGTCCGGTACGATCAAATAAAAGAGAGGAAATTAGCTCTACAAATGGTTGTGGTAATCCTGGTCACTATCGTAACAAATGTCCATCAATTAACAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE

Protein Analysis

387

Amino Acids

44.97

Weight (kDa)

8.4

Isoelectric Point (pI)

44.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MULE PF10551 1 - 82 6.2e-17 MULE transposase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000143)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G76710 AT1G76710 AT1G76710 AT1G76710
fragaria_vesca FvH4_1g20063 FvH4_2g15231 FvH4_3g04011 FvH4_3g28681 FvH4_4g01411 FvH4_4g10181 FvH4_4g15922 FvH4_4g16651 FvH4_4g16652 FvH4_5g13892 FvH4_5g13893 FvH4_5g20623 FvH4_5g20623 FvH4_5g20623 FvH4_5g20623 FvH4_5g25511 FvH4_6g12551 FvH4_6g12552 FvH4_6g38841 FvH4_7g04391
malus_domestica MD05G1031300.v1.1 MD05G1031400.v1.1 MD05G1031500.v1.1 MD08G1164400.v1.1 MD10G1032900.v1.1 MD10G1033000.v1.1 MD10G1033100.v1.1
prunus_persica Prupe.3G240700_v2.0.a1 Prupe.7G144600_v2.0.a1 Prupe.8G038500_v2.0.a1 Prupe.8G038500_v2.0.a1
pyrus_communis pycom05g02250 pycom05g02260 pycom05g02270 pycom05g02280 pycom08g14160 pycom10g02100 pycom10g02110 pycom10g02130
rosa_chinensis RchiOBHm_Chr1g0329481 RchiOBHm_Chr1g0329491 RchiOBHm_Chr1g0341531 RchiOBHm_Chr3g0464811 RchiOBHm_Chr3g0494701 RchiOBHm_Chr3g0497501 RchiOBHm_Chr4g0385841 RchiOBHm_Chr5g0061181 RchiOBHm_Chr6g0263001 RchiOBHm_Chr7g0193111 RchiOBHm_Chr7g0206281 RchiOBHm_Chr7g0206311
rosa_laevigata RLG00000018908 RLG00000028528 RLG00000028803 RLG00000029882 RLG00000029883 RLG00000030361
rosa_multiflora Rmu_co8196328.1_g000001 Rmu_co8259135.1_g000001 Rmu_co8269185.1_g000001 Rmu_sc0000076.1_g000019 Rmu_sc0000311.1_g000007 Rmu_sc0000429.1_g000038 Rmu_sc0000429.1_g000039 Rmu_sc0000429.1_g000040 Rmu_sc0000511.1_g000005 Rmu_sc0000539.1_g000054 Rmu_sc0000566.1_g000039 Rmu_sc0000805.1_g000032 Rmu_sc0000870.1_g000073 Rmu_sc0000870.1_g000074 Rmu_sc0001010.1_g000018 Rmu_sc0001083.1_g000013 Rmu_sc0001114.1_g000011 Rmu_sc0001702.1_g000027 Rmu_sc0001779.1_g000012 Rmu_sc0002923.1_g000036 Rmu_sc0003242.1_g000011 Rmu_sc0003291.1_g000036 Rmu_sc0003393.1_g000012 Rmu_sc0003872.1_g000016 Rmu_sc0003872.1_g000017 Rmu_sc0003872.1_g000018 Rmu_sc0004084.1_g000020 Rmu_sc0004386.1_g000005 Rmu_sc0004622.1_g000005 Rmu_sc0004742.1_g000021 Rmu_sc0004755.1_g000020 Rmu_sc0004805.1_g000036 Rmu_sc0005065.1_g000006 Rmu_sc0005177.1_g000004 Rmu_sc0006373.1_g000003 Rmu_sc0006373.1_g000004 Rmu_sc0007121.1_g000002 Rmu_sc0007943.1_g000003 Rmu_sc0010368.1_g000006 Rmu_sc0010543.1_g000001 Rmu_sc0012591.1_g000006 Rmu_sc0013504.1_g000009 Rmu_sc0015025.1_g000001 Rmu_sc0016170.1_g000001 Rmu_sc0017156.1_g000001 Rmu_sc0026439.1_g000001
rosa_roxburghii Rroxscaffold_175G00432280 Rroxscaffold_1G00030190 Rroxscaffold_1G00030880 Rroxscaffold_2G00090520 Rroxscaffold_3G00227940 Rroxscaffold_3G00233400 Rroxscaffold_3G00238500 Rroxscaffold_3G00251650 Rroxscaffold_4G00301570 Rroxscaffold_4G00321040 Rroxscaffold_5G00350880 Rroxscaffold_7G00184400
rosa_rugosa Rorug01G0080800 Rorug01G0080900 Rorug01G0193900 Rorug02G0275900 Rorug02G0275900 Rorug02G0275900 Rorug02G0305400 Rorug02G0311800 Rorug02G0350400 Rorug02G0381300 Rorug03G0136700 Rorug03G0181900 Rorug03G0268000 Rorug04G0301600 Rorug05G0175100 Rorug05G0250700 Rorug05G0298200 Rorug05G0596000 Rorug06G0029500 Rorug07G0094300 Rorug07G0094300 Rorug07G0095400 Rorug07G0140100
rosa_samantha Rh1AG099200 Rh1AG190500 Rh1BG078900 Rh1BG079000 Rh1BG079100 Rh1CG084600 Rh1CG084700 Rh1CG095300 Rh1CG175900 Rh1DG103300 Rh1DG150400 Rh2AG079300 Rh2AG272400 Rh2AG464800 Rh2AG507400 Rh2DG078300 Rh2DG078400 Rh3CG206900 Rh3CG295400 Rh3DG206800 Rh3DG356200 Rh4CG071500 Rh4CG179200 Rh4DG064700 Rh5CG362400 Rh7AG212300 Rh7AG226200 Rh7BG222200
rosa_wichuraiana Rw0G009990 Rw0G011260 Rw0G011270 Rw0G012910 Rw0G013740 Rw1G007740 Rw1G013050 Rw1G014230 Rw2G014270 Rw3G012720 Rw3G028110 Rw4G006630 Rw4G015270 Rw4G016160 Rw4G031380 Rw5G011440 Rw5G029180 Rw5G048360 Rw5G048430 Rw5G048780 Rw6G005250 Rw6G006390 Rw7G002840 Rw7G014080 Rw7G019650 Rw7G032790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 911, 915
AcsI RAATTY 1 cut(s) 846
AcuI CTGAAG 1 cut(s) 378
AfaI GTAC 3 cut(s) 380, 1011, 1074
AfiI CCNNNNNNNGG 1 cut(s) 1061
AgsI TTSAA 8 cut(s) 37, 107, 371, 536, 543, 590, 827, 1040
AjiI CACGTC 1 cut(s) 337
AjnI CCWGG 1 cut(s) 1123
AluBI AGCT 6 cut(s) 33, 356, 652, 903, 1000, 1101
AluI AGCT 6 cut(s) 33, 356, 652, 903, 1000, 1101
Alw21I GWGCWC 2 cut(s) 511, 804
Alw26I GTCTC 1 cut(s) 694
Alw44I GTGCAC 2 cut(s) 507, 800
AlwI GGATC 2 cut(s) 911, 915
AoxI GGCC 1 cut(s) 99
ApaI GGGCCC 1 cut(s) 103
ApaLI GTGCAC 2 cut(s) 507, 800
ApeKI GCWGC 2 cut(s) 832, 997
ApoI RAATTY 1 cut(s) 846
Asp700I GAANNNNTTC 1 cut(s) 633
AspS9I GGNCC 3 cut(s) 99, 100, 312
AvaII GGWCC 1 cut(s) 312
BaeGI GKGCMC 3 cut(s) 103, 511, 804
BanII GRGCYC 1 cut(s) 103
BbsI GAAGAC 2 cut(s) 545, 782
Bbv12I GWGCWC 2 cut(s) 511, 804
BbvI GCAGC 2 cut(s) 819, 1009
BccI CCATC 1 cut(s) 1156
BciT130I CCWGG 1 cut(s) 1125
BclI TGATCA 2 cut(s) 807, 889
BcoDI GTCTC 1 cut(s) 694
BfaI CTAG 1 cut(s) 495
BglII AGATCT 1 cut(s) 875
BisI GCNGC 2 cut(s) 833, 998
BlsI GCNGC 2 cut(s) 834, 999
BmcAI AGTACT 1 cut(s) 1011
Bme1390I CCNGG 1 cut(s) 1125
Bme18I GGWCC 1 cut(s) 312
BmgBI CACGTC 1 cut(s) 337
BmgT120I GGNCC 3 cut(s) 99, 100, 312
BmiI GGNNCC 1 cut(s) 101
BmrFI CCNGG 1 cut(s) 1125
BmsI GCATC 2 cut(s) 666, 1028
BpiI GAAGAC 2 cut(s) 545, 782
BpuEI CTTGAG 2 cut(s) 32, 990
BsaI GGTCTC 1 cut(s) 694
BsaJI CCNNGG 2 cut(s) 428, 783
BsaWI WCCGGW 1 cut(s) 1069
BsaXI ACNNNNNCTCC 2 cut(s) 158, 188
Bsc4I CCNNNNNNNGG 1 cut(s) 1061
Bse1I ACTGG 1 cut(s) 550
Bse3DI GCAATG 1 cut(s) 863
BseBI CCWGG 1 cut(s) 1125
BseDI CCNNGG 2 cut(s) 428, 783
BseGI GGATG 1 cut(s) 657
BseLI CCNNNNNNNGG 1 cut(s) 1061
BseMI GCAATG 1 cut(s) 863
BseMII CTCAG 1 cut(s) 930
BseNI ACTGG 1 cut(s) 550
BseSI GKGCMC 3 cut(s) 103, 511, 804
BseXI GCAGC 2 cut(s) 819, 1009
BshFI GGCC 1 cut(s) 101
BsiHKAI GWGCWC 2 cut(s) 511, 804
BsiSI CCGG 1 cut(s) 1070
BslFI GGGAC 2 cut(s) 347, 1011
BslI CCNNNNNNNGG 1 cut(s) 1061
BsmAI GTCTC 1 cut(s) 694
BsmFI GGGAC 2 cut(s) 347, 1011
BsnI GGCC 1 cut(s) 101
Bso31I GGTCTC 1 cut(s) 694
Bsp120I GGGCCC 1 cut(s) 99
Bsp1286I GDGCHC 3 cut(s) 103, 511, 804
Bsp143I GATC 6 cut(s) 807, 875, 889, 907, 916, 1076
Bsp19I CCATGG 2 cut(s) 428, 783
BspANI GGCC 1 cut(s) 101
BspCNI CTCAG 1 cut(s) 931
BspHI TCATGA 1 cut(s) 910
BspLI GGNNCC 1 cut(s) 101
BspPI GGATC 2 cut(s) 911, 915
BspTNI GGTCTC 1 cut(s) 694
BsrDI GCAATG 1 cut(s) 863
BsrI ACTGG 1 cut(s) 550
BssECI CCNNGG 2 cut(s) 428, 783
BssMI GATC 6 cut(s) 807, 875, 889, 907, 916, 1076
BssT1I CCWWGG 2 cut(s) 428, 783
Bst2UI CCWGG 1 cut(s) 1125
BstAPI GCANNNNNTGC 1 cut(s) 506
BstC8I GCNNGC 1 cut(s) 901
BstDEI CTNAG 2 cut(s) 319, 939
BstDSI CCRYGG 2 cut(s) 428, 783
BstENI CCTNNNNNAGG 1 cut(s) 1059
BstF5I GGATG 1 cut(s) 657
BstKTI GATC 6 cut(s) 810, 878, 892, 910, 919, 1079
BstMAI GTCTC 1 cut(s) 694
BstMBI GATC 6 cut(s) 807, 875, 889, 907, 916, 1076
BstMWI GCNNNNNNNGC 2 cut(s) 506, 973
BstNI CCWGG 1 cut(s) 1125
BstNSI RCATGY 1 cut(s) 515
BstSCI CCNGG 1 cut(s) 1123
BstSLI GKGCMC 3 cut(s) 103, 511, 804
BstV1I GCAGC 2 cut(s) 819, 1009
BstV2I GAAGAC 2 cut(s) 545, 782
BstX2I RGATCY 2 cut(s) 875, 916
BstXI CCANNNNNNTGG 1 cut(s) 784
BstYI RGATCY 2 cut(s) 875, 916
BsuRI GGCC 1 cut(s) 101
BtgI CCRYGG 2 cut(s) 428, 783
BtrI CACGTC 1 cut(s) 337
BtsCI GGATG 1 cut(s) 657
Cac8I GCNNGC 1 cut(s) 901
CciI TCATGA 1 cut(s) 910
Cfr13I GGNCC 3 cut(s) 99, 100, 312
Csp6I GTAC 3 cut(s) 379, 1010, 1073
CviAII CATG 9 cut(s) 54, 67, 429, 453, 512, 784, 805, 896, 911
CviQI GTAC 3 cut(s) 379, 1010, 1073
DdeI CTNAG 2 cut(s) 319, 939
DpnI GATC 6 cut(s) 809, 877, 891, 909, 918, 1078
DpnII GATC 6 cut(s) 807, 875, 889, 907, 916, 1076
DraI TTTAAA 3 cut(s) 274, 522, 670
Eco130I CCWWGG 2 cut(s) 428, 783
Eco24I GRGCYC 1 cut(s) 103
Eco31I GGTCTC 1 cut(s) 694
Eco47I GGWCC 1 cut(s) 312
Eco57I CTGAAG 1 cut(s) 378
EcoNI CCTNNNNNAGG 1 cut(s) 1059
EcoO109I RGGNCCY 1 cut(s) 100
EcoRII CCWGG 1 cut(s) 1123
EcoT14I CCWWGG 2 cut(s) 428, 783
EcoT38I GRGCYC 1 cut(s) 103
ErhI CCWWGG 2 cut(s) 428, 783
FaeI CATG 9 cut(s) 57, 70, 432, 456, 515, 787, 808, 899, 914
FalI AAGNNNNNCTT 2 cut(s) 710, 742
FaqI GGGAC 2 cut(s) 347, 1011
FatI CATG 9 cut(s) 53, 66, 428, 452, 511, 783, 804, 895, 910
FauNDI CATATG 2 cut(s) 227, 852
FbaI TGATCA 2 cut(s) 807, 889
Fnu4HI GCNGC 2 cut(s) 833, 998
FokI GGATG 1 cut(s) 644
FriOI GRGCYC 1 cut(s) 103
Fsp4HI GCNGC 2 cut(s) 833, 998
FspBI CTAG 1 cut(s) 495
GluI GCNGC 2 cut(s) 833, 998
HaeIII GGCC 1 cut(s) 101
HapII CCGG 1 cut(s) 1070
Hin1II CATG 9 cut(s) 57, 70, 432, 456, 515, 787, 808, 899, 914
HindIII AAGCTT 3 cut(s) 354, 650, 901
HinfI GANTC 2 cut(s) 361, 634
HpaII CCGG 1 cut(s) 1070
Hpy166II GTNNAC 2 cut(s) 509, 802
Hpy188I TCNGA 2 cut(s) 402, 940
Hpy188III TCNNGA 4 cut(s) 202, 557, 602, 911
Hpy8I GTNNAC 2 cut(s) 509, 802
HpyAV CCTTC 2 cut(s) 497, 559
HpyCH4IV ACGT 1 cut(s) 336
HpyF10VI GCNNNNNNNGC 2 cut(s) 506, 973
HpyF3I CTNAG 2 cut(s) 319, 939
HpySE526I ACGT 1 cut(s) 336
Hsp92II CATG 9 cut(s) 57, 70, 432, 456, 515, 787, 808, 899, 914
Ksp22I TGATCA 2 cut(s) 807, 889
Kzo9I GATC 6 cut(s) 807, 875, 889, 907, 916, 1076
LpnPI CCDG 6 cut(s) 444, 531, 587, 1083, 1110, 1137
Lsp1109I GCAGC 2 cut(s) 819, 1009
LweI GCATC 2 cut(s) 666, 1028
MaeI CTAG 1 cut(s) 495
MaeII ACGT 1 cut(s) 336
MaeIII GTNAC 5 cut(s) 25, 487, 711, 1127, 1136
MalI GATC 6 cut(s) 809, 877, 891, 909, 918, 1078
MboI GATC 6 cut(s) 807, 875, 889, 907, 916, 1076
MboII GAAGA 7 cut(s) 89, 290, 297, 524, 545, 782, 926
MflI RGATCY 2 cut(s) 875, 916
MhlI GDGCHC 3 cut(s) 103, 511, 804
MluCI AATT 9 cut(s) 372, 596, 606, 770, 846, 864, 1032, 1095, 1152
MnlI CCTC 7 cut(s) 79, 432, 654, 667, 846, 1065, 1084
MroXI GAANNNNTTC 1 cut(s) 633
MslI CAYNNNNRTG 1 cut(s) 757
MspI CCGG 1 cut(s) 1070
MspR9I CCNGG 1 cut(s) 1125
MvaI CCWGG 1 cut(s) 1125
MwoI GCNNNNNNNGC 2 cut(s) 506, 973
NcoI CCATGG 2 cut(s) 428, 783
NdeI CATATG 2 cut(s) 227, 852
NdeII GATC 6 cut(s) 807, 875, 889, 907, 916, 1076
NlaIII CATG 9 cut(s) 57, 70, 432, 456, 515, 787, 808, 899, 914
NlaIV GGNNCC 1 cut(s) 101
NmuCI GTSAC 2 cut(s) 25, 1127
NspI RCATGY 1 cut(s) 515
PagI TCATGA 1 cut(s) 910
PcsI WCGNNNNNNNCGW 1 cut(s) 1072
PdmI GAANNNNTTC 1 cut(s) 633
PfeI GAWTC 2 cut(s) 361, 634
PkrI GCNGC 2 cut(s) 834, 999
Psp6I CCWGG 1 cut(s) 1123
PspGI CCWGG 1 cut(s) 1123
PspN4I GGNNCC 1 cut(s) 101
PspOMI GGGCCC 1 cut(s) 99
PspPI GGNCC 3 cut(s) 99, 100, 312
PsuI RGATCY 2 cut(s) 875, 916
RsaI GTAC 3 cut(s) 380, 1011, 1074
RsaNI GTAC 3 cut(s) 379, 1010, 1073
RseI CAYNNNNRTG 1 cut(s) 757
SatI GCNGC 2 cut(s) 833, 998
Sau3AI GATC 6 cut(s) 807, 875, 889, 907, 916, 1076
Sau96I GGNCC 3 cut(s) 99, 100, 312
ScaI AGTACT 1 cut(s) 1011
ScrFI CCNGG 1 cut(s) 1125
SduI GDGCHC 3 cut(s) 103, 511, 804
SfaNI GCATC 2 cut(s) 666, 1028
SinI GGWCC 1 cut(s) 312
SmiMI CAYNNNNRTG 1 cut(s) 757
SmlI CTYRAG 2 cut(s) 11, 1005
SmoI CTYRAG 2 cut(s) 11, 1005
Sse9I AATT 9 cut(s) 372, 596, 606, 770, 846, 864, 1032, 1095, 1152
SspI AATATT 3 cut(s) 247, 574, 823
SspMI CTAG 1 cut(s) 495
StyD4I CCNGG 1 cut(s) 1123
StyI CCWWGG 2 cut(s) 428, 783
TaiI ACGT 1 cut(s) 339
TasI AATT 9 cut(s) 372, 596, 606, 770, 846, 864, 1032, 1095, 1152
TatI WGTACW 2 cut(s) 378, 1009
TfiI GAWTC 2 cut(s) 361, 634
TseFI GTSAC 2 cut(s) 25, 1127
TseI GCWGC 2 cut(s) 832, 997
Tsp45I GTSAC 2 cut(s) 25, 1127
TspGWI ACGGA 1 cut(s) 783
VneI GTGCAC 2 cut(s) 507, 800
VpaK11BI GGWCC 1 cut(s) 312
XagI CCTNNNNNAGG 1 cut(s) 1059
XapI RAATTY 1 cut(s) 846
XceI RCATGY 1 cut(s) 515
XmnI GAANNNNTTC 1 cut(s) 633
XspI CTAG 1 cut(s) 495
ZrmI AGTACT 1 cut(s) 1011
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.