RLG00000018908

protein FAR1-RELATED SEQUENCE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0000143
Physical Location & Seq
Forward (+)
42616121 .. 42618269
2149 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000018908

Sequence Viewer

Length: 846 bp
ATGAGGCCTTACATTCTAGGTTCATTTGATGTTGAGTCTGATGGTAATTGTGGTTATAGAGTTGTAGCATCAGCTATGGGATTTGGTAGGCGTTTTTGGCGAAGAGTTCGAATAGACCTAATGAATGAGCTAAAAAGTATGCCCCACTTGTACATGAAACTATATGGTAGCGAAAGTAGTGTAGAGAATATTATACACAGACTAAACCATTCTGGATCTACTGCACCACGTAGAAAATGGATGTGTATAACAGAGATGGGGCATTTGATCGCTACTTACTATGGAGTTGTTGTGATAAACTTATCTGATAAACAGTGCCTTACCTTTCTTCCTTTGACTGAACACATTACTGGACGATTTCAGAACCAAGAACTGCCTGAAAATGGAATTGGTTTTGTTAACGGAGACCACTTTGTGCAGGTGTCTTTGCAAGCGGGATGCCCATTACCACCAATCTCACCAAATTGGTACCCCCATGCTGATGATAAAGCAAGATCATTATACAATAGATACAAGGATCGTCTGCATCAATATACCCAAATACCCCATCCAGAAAAAACTCGCAACGCCGTTGTAAACCGGCTTGTCAAAAATCGGGACGGAAGCTGCGACCTTGCAGGTGGAATCAGTGGGCCCACCACCACCGTAGATGGAATCCAAGTTGAAAGCTTAGAAATTGCTGGAGAACTTGGCCGAGCCGCCGAAGATGTTCTCAAAGGCTTAGGCTTTCGGGGCTCTGAAAATCGGTTCGCGATTGTCAGAGAAGGACCCATTGAAGGAATTGGAGGTGCGAGTTGCTCTGGAGGAGGGTCCGGTGGATCTAAGATTGAATGCTATGGGCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AFT FAR1 MULE

Protein Analysis

282

Amino Acids

30.99

Weight (kDa)

8.14

Isoelectric Point (pI)

42.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000143)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G76710 AT1G76710 AT1G76710 AT1G76710
fragaria_vesca FvH4_1g20063 FvH4_2g15231 FvH4_3g04011 FvH4_3g28681 FvH4_4g01411 FvH4_4g10181 FvH4_4g15922 FvH4_4g16651 FvH4_4g16652 FvH4_5g13892 FvH4_5g13893 FvH4_5g20623 FvH4_5g20623 FvH4_5g20623 FvH4_5g20623 FvH4_5g25511 FvH4_6g12551 FvH4_6g12552 FvH4_6g38841 FvH4_7g04391
malus_domestica MD05G1031300.v1.1 MD05G1031400.v1.1 MD05G1031500.v1.1 MD08G1164400.v1.1 MD10G1032900.v1.1 MD10G1033000.v1.1 MD10G1033100.v1.1
prunus_persica Prupe.3G240700_v2.0.a1 Prupe.7G144600_v2.0.a1 Prupe.8G038500_v2.0.a1 Prupe.8G038500_v2.0.a1
pyrus_communis pycom05g02250 pycom05g02260 pycom05g02270 pycom05g02280 pycom08g14160 pycom10g02100 pycom10g02110 pycom10g02130
rosa_chinensis RchiOBHm_Chr1g0329481 RchiOBHm_Chr1g0329491 RchiOBHm_Chr1g0341531 RchiOBHm_Chr3g0464811 RchiOBHm_Chr3g0494701 RchiOBHm_Chr3g0497501 RchiOBHm_Chr4g0385841 RchiOBHm_Chr5g0061181 RchiOBHm_Chr6g0263001 RchiOBHm_Chr7g0193111 RchiOBHm_Chr7g0206281 RchiOBHm_Chr7g0206311
rosa_laevigata RLG00000018908 RLG00000028528 RLG00000028803 RLG00000029882 RLG00000029883 RLG00000030361
rosa_multiflora Rmu_co8196328.1_g000001 Rmu_co8259135.1_g000001 Rmu_co8269185.1_g000001 Rmu_sc0000076.1_g000019 Rmu_sc0000311.1_g000007 Rmu_sc0000429.1_g000038 Rmu_sc0000429.1_g000039 Rmu_sc0000429.1_g000040 Rmu_sc0000511.1_g000005 Rmu_sc0000539.1_g000054 Rmu_sc0000566.1_g000039 Rmu_sc0000805.1_g000032 Rmu_sc0000870.1_g000073 Rmu_sc0000870.1_g000074 Rmu_sc0001010.1_g000018 Rmu_sc0001083.1_g000013 Rmu_sc0001114.1_g000011 Rmu_sc0001702.1_g000027 Rmu_sc0001779.1_g000012 Rmu_sc0002923.1_g000036 Rmu_sc0003242.1_g000011 Rmu_sc0003291.1_g000036 Rmu_sc0003393.1_g000012 Rmu_sc0003872.1_g000016 Rmu_sc0003872.1_g000017 Rmu_sc0003872.1_g000018 Rmu_sc0004084.1_g000020 Rmu_sc0004386.1_g000005 Rmu_sc0004622.1_g000005 Rmu_sc0004742.1_g000021 Rmu_sc0004755.1_g000020 Rmu_sc0004805.1_g000036 Rmu_sc0005065.1_g000006 Rmu_sc0005177.1_g000004 Rmu_sc0006373.1_g000003 Rmu_sc0006373.1_g000004 Rmu_sc0007121.1_g000002 Rmu_sc0007943.1_g000003 Rmu_sc0010368.1_g000006 Rmu_sc0010543.1_g000001 Rmu_sc0012591.1_g000006 Rmu_sc0013504.1_g000009 Rmu_sc0015025.1_g000001 Rmu_sc0016170.1_g000001 Rmu_sc0017156.1_g000001 Rmu_sc0026439.1_g000001
rosa_roxburghii Rroxscaffold_175G00432280 Rroxscaffold_1G00030190 Rroxscaffold_1G00030880 Rroxscaffold_2G00090520 Rroxscaffold_3G00227940 Rroxscaffold_3G00233400 Rroxscaffold_3G00238500 Rroxscaffold_3G00251650 Rroxscaffold_4G00301570 Rroxscaffold_4G00321040 Rroxscaffold_5G00350880 Rroxscaffold_7G00184400
rosa_rugosa Rorug01G0080800 Rorug01G0080900 Rorug01G0193900 Rorug02G0275900 Rorug02G0275900 Rorug02G0275900 Rorug02G0305400 Rorug02G0311800 Rorug02G0350400 Rorug02G0381300 Rorug03G0136700 Rorug03G0181900 Rorug03G0268000 Rorug04G0301600 Rorug05G0175100 Rorug05G0250700 Rorug05G0298200 Rorug05G0596000 Rorug06G0029500 Rorug07G0094300 Rorug07G0094300 Rorug07G0095400 Rorug07G0140100
rosa_samantha Rh1AG099200 Rh1AG190500 Rh1BG078900 Rh1BG079000 Rh1BG079100 Rh1CG084600 Rh1CG084700 Rh1CG095300 Rh1CG175900 Rh1DG103300 Rh1DG150400 Rh2AG079300 Rh2AG272400 Rh2AG464800 Rh2AG507400 Rh2DG078300 Rh2DG078400 Rh3CG206900 Rh3CG295400 Rh3DG206800 Rh3DG356200 Rh4CG071500 Rh4CG179200 Rh4DG064700 Rh5CG362400 Rh7AG212300 Rh7AG226200 Rh7BG222200
rosa_wichuraiana Rw0G009990 Rw0G011260 Rw0G011270 Rw0G012910 Rw0G013740 Rw1G007740 Rw1G013050 Rw1G014230 Rw2G014270 Rw3G012720 Rw3G028110 Rw4G006630 Rw4G015270 Rw4G016160 Rw4G031380 Rw5G011440 Rw5G029180 Rw5G048360 Rw5G048430 Rw5G048780 Rw6G005250 Rw6G006390 Rw7G002840 Rw7G014080 Rw7G019650 Rw7G032790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 409, 608
Acc36I ACCTGC 2 cut(s) 409, 608
Acc65I GGTACC 1 cut(s) 468
AccB1I GGYRCC 1 cut(s) 468
AccII CGCG 1 cut(s) 752
AciI CCGC 2 cut(s) 434, 699
AclWI GGATC 3 cut(s) 223, 525, 826
AcoI YGGCCR 1 cut(s) 691
AdeI CACNNNGTG 1 cut(s) 415
AfaI GTAC 2 cut(s) 152, 470
AfiI CCNNNNNNNGG 2 cut(s) 383, 776
AgsI TTSAA 3 cut(s) 665, 776, 830
AjuI GAANNNNNNNTTGG 2 cut(s) 372, 404
AluBI AGCT 4 cut(s) 74, 130, 606, 669
AluI AGCT 4 cut(s) 74, 130, 606, 669
Alw26I GTCTC 1 cut(s) 399
AlwI GGATC 3 cut(s) 223, 525, 826
AoxI GGCC 3 cut(s) 5, 632, 691
ApaI GGGCCC 1 cut(s) 636
ApeKI GCWGC 1 cut(s) 606
Asp700I GAANNNNTTC 1 cut(s) 708
Asp718I GGTACC 1 cut(s) 468
AspS9I GGNCC 4 cut(s) 632, 633, 767, 810
AsuHPI GGTGA 1 cut(s) 450
AsuII TTCGAA 1 cut(s) 109
AvaII GGWCC 2 cut(s) 767, 810
BaeGI GKGCMC 1 cut(s) 636
BanI GGYRCC 1 cut(s) 468
BanII GRGCYC 2 cut(s) 636, 737
BbvI GCAGC 1 cut(s) 593
BccI CCATC 4 cut(s) 35, 250, 555, 644
BceAI ACGGC 1 cut(s) 554
BcoDI GTCTC 1 cut(s) 399
BfaI CTAG 1 cut(s) 17
BfuAI ACCTGC 2 cut(s) 409, 608
BisI GCNGC 2 cut(s) 607, 699
BlsI GCNGC 2 cut(s) 608, 700
Bme18I GGWCC 2 cut(s) 767, 810
BmgT120I GGNCC 4 cut(s) 632, 633, 767, 810
BmiI GGNNCC 4 cut(s) 470, 634, 769, 811
BmsI GCATC 3 cut(s) 77, 428, 535
BpmI CTGGAG 2 cut(s) 702, 822
Bpu10I CCTNAGC 1 cut(s) 721
Bpu14I TTCGAA 1 cut(s) 109
BsaAI YACGTR 1 cut(s) 230
BsaI GGTCTC 1 cut(s) 399
BsaWI WCCGGW 1 cut(s) 812
BsaXI ACNNNNNCTCC 2 cut(s) 276, 306
Bsc4I CCNNNNNNNGG 2 cut(s) 383, 776
Bse118I RCCGGY 1 cut(s) 579
Bse1I ACTGG 1 cut(s) 355
BseGI GGATG 3 cut(s) 246, 443, 547
BseLI CCNNNNNNNGG 2 cut(s) 383, 776
BseNI ACTGG 1 cut(s) 355
BseRI GAGGAG 1 cut(s) 819
BseSI GKGCMC 1 cut(s) 636
BseXI GCAGC 1 cut(s) 593
BsgI GTGCAG 2 cut(s) 207, 437
Bsh1236I CGCG 1 cut(s) 752
BshFI GGCC 3 cut(s) 7, 634, 693
BshNI GGYRCC 1 cut(s) 468
BsiSI CCGG 2 cut(s) 580, 813
BslFI GGGAC 1 cut(s) 611
BslI CCNNNNNNNGG 2 cut(s) 383, 776
BsmAI GTCTC 1 cut(s) 399
BsmFI GGGAC 1 cut(s) 611
BsmI GAATGC 1 cut(s) 836
BsnI GGCC 3 cut(s) 7, 634, 693
Bso31I GGTCTC 1 cut(s) 399
Bsp119I TTCGAA 1 cut(s) 109
Bsp120I GGGCCC 1 cut(s) 632
Bsp1286I GDGCHC 2 cut(s) 636, 737
Bsp1407I TGTACA 1 cut(s) 150
Bsp143I GATC 5 cut(s) 215, 267, 494, 517, 818
Bsp68I TCGCGA 1 cut(s) 752
BspACI CCGC 2 cut(s) 434, 699
BspANI GGCC 3 cut(s) 7, 634, 693
BspFNI CGCG 1 cut(s) 752
BspLI GGNNCC 4 cut(s) 470, 634, 769, 811
BspMI ACCTGC 2 cut(s) 409, 608
BspPI GGATC 3 cut(s) 223, 525, 826
BspT104I TTCGAA 1 cut(s) 109
BspT107I GGYRCC 1 cut(s) 468
BspTNI GGTCTC 1 cut(s) 399
BsrFI RCCGGY 1 cut(s) 579
BsrGI TGTACA 1 cut(s) 150
BsrI ACTGG 1 cut(s) 355
BssAI RCCGGY 1 cut(s) 579
BssMI GATC 5 cut(s) 215, 267, 494, 517, 818
Bst4CI ACNGT 2 cut(s) 315, 646
Bst6I CTCTTC 1 cut(s) 97
BstAUI TGTACA 1 cut(s) 150
BstBAI YACGTR 1 cut(s) 230
BstBI TTCGAA 1 cut(s) 109
BstC8I GCNNGC 1 cut(s) 432
BstDEI CTNAG 3 cut(s) 670, 721, 822
BstF5I GGATG 3 cut(s) 246, 443, 547
BstFNI CGCG 1 cut(s) 752
BstKTI GATC 5 cut(s) 218, 270, 497, 520, 821
BstMAI GTCTC 1 cut(s) 399
BstMBI GATC 5 cut(s) 215, 267, 494, 517, 818
BstMWI GCNNNNNNNGC 2 cut(s) 97, 732
BstSLI GKGCMC 1 cut(s) 636
BstUI CGCG 1 cut(s) 752
BstV1I GCAGC 1 cut(s) 593
BstX2I RGATCY 2 cut(s) 215, 818
BstYI RGATCY 2 cut(s) 215, 818
BsuRI GGCC 3 cut(s) 7, 634, 693
BtsCI GGATG 3 cut(s) 246, 443, 547
BtsIMutI CAGTG 2 cut(s) 320, 634
BtuMI TCGCGA 1 cut(s) 752
BveI ACCTGC 2 cut(s) 409, 608
Cac8I GCNNGC 1 cut(s) 432
Cfr10I RCCGGY 1 cut(s) 579
Cfr13I GGNCC 4 cut(s) 632, 633, 767, 810
Csp6I GTAC 2 cut(s) 151, 469
CviAII CATG 2 cut(s) 154, 476
CviQI GTAC 2 cut(s) 151, 469
DdeI CTNAG 3 cut(s) 670, 721, 822
DpnI GATC 5 cut(s) 217, 269, 496, 519, 820
DpnII GATC 5 cut(s) 215, 267, 494, 517, 818
DraIII CACNNNGTG 1 cut(s) 415
EaeI YGGCCR 1 cut(s) 691
Eam1104I CTCTTC 1 cut(s) 97
EarI CTCTTC 1 cut(s) 97
Eco147I AGGCCT 1 cut(s) 7
Eco24I GRGCYC 2 cut(s) 636, 737
Eco31I GGTCTC 1 cut(s) 399
Eco47I GGWCC 2 cut(s) 767, 810
EcoO109I RGGNCCY 1 cut(s) 767
EcoT38I GRGCYC 2 cut(s) 636, 737
FaeI CATG 2 cut(s) 157, 479
FaqI GGGAC 1 cut(s) 611
FatI CATG 2 cut(s) 153, 475
FauI CCCGC 1 cut(s) 427
Fnu4HI GCNGC 2 cut(s) 607, 699
FokI GGATG 3 cut(s) 253, 450, 534
FriOI GRGCYC 2 cut(s) 636, 737
Fsp4HI GCNGC 2 cut(s) 607, 699
FspBI CTAG 1 cut(s) 17
GluI GCNGC 2 cut(s) 607, 699
GsuI CTGGAG 2 cut(s) 702, 822
HaeIII GGCC 3 cut(s) 7, 634, 693
HapII CCGG 2 cut(s) 580, 813
Hin1II CATG 2 cut(s) 157, 479
HincII GTYRAC 1 cut(s) 400
HindII GTYRAC 1 cut(s) 400
HindIII AAGCTT 1 cut(s) 667
HinfI GANTC 3 cut(s) 35, 624, 654
HpaI GTTAAC 1 cut(s) 400
HpaII CCGG 2 cut(s) 580, 813
HphI GGTGA 1 cut(s) 450
Hpy166II GTNNAC 2 cut(s) 400, 577
Hpy188I TCNGA 5 cut(s) 40, 307, 363, 739, 761
Hpy188III TCNNGA 5 cut(s) 213, 551, 596, 751, 801
Hpy8I GTNNAC 2 cut(s) 400, 577
HpyAV CCTTC 2 cut(s) 758, 770
HpyCH4III ACNGT 2 cut(s) 315, 646
HpyCH4IV ACGT 1 cut(s) 229
HpyCH4V TGCA 5 cut(s) 224, 418, 430, 526, 617
HpyF10VI GCNNNNNNNGC 2 cut(s) 97, 732
HpyF3I CTNAG 3 cut(s) 670, 721, 822
HpySE526I ACGT 1 cut(s) 229
Hsp92II CATG 2 cut(s) 157, 479
KpnI GGTACC 1 cut(s) 472
KspAI GTTAAC 1 cut(s) 400
Kzo9I GATC 5 cut(s) 215, 267, 494, 517, 818
Lsp1109I GCAGC 1 cut(s) 593
LweI GCATC 3 cut(s) 77, 428, 535
MaeI CTAG 1 cut(s) 17
MaeII ACGT 1 cut(s) 229
MalI GATC 5 cut(s) 217, 269, 496, 519, 820
MboI GATC 5 cut(s) 215, 267, 494, 517, 818
MboII GAAGA 3 cut(s) 114, 320, 716
MflI RGATCY 2 cut(s) 215, 818
MhlI GDGCHC 2 cut(s) 636, 737
MluCI AATT 5 cut(s) 46, 387, 463, 675, 780
MlyI GAGTC 1 cut(s) 44
MnlI CCTC 3 cut(s) 779, 797, 800
MroXI GAANNNNTTC 1 cut(s) 708
MseI TTAA 1 cut(s) 399
MslI CAYNNNNRTG 1 cut(s) 480
MspI CCGG 2 cut(s) 580, 813
Mva1269I GAATGC 1 cut(s) 836
MvnI CGCG 1 cut(s) 752
MwoI GCNNNNNNNGC 2 cut(s) 97, 732
NdeII GATC 5 cut(s) 215, 267, 494, 517, 818
NlaIII CATG 2 cut(s) 157, 479
NlaIV GGNNCC 4 cut(s) 470, 634, 769, 811
NmeAIII GCCGAG 1 cut(s) 719
NruI TCGCGA 1 cut(s) 752
NspV TTCGAA 1 cut(s) 109
PaqCI CACCTGC 2 cut(s) 409, 608
PceI AGGCCT 1 cut(s) 7
PcsI WCGNNNNNNNCGW 1 cut(s) 606
PctI GAATGC 1 cut(s) 836
PdmI GAANNNNTTC 1 cut(s) 708
PfeI GAWTC 2 cut(s) 624, 654
PkrI GCNGC 2 cut(s) 608, 700
PleI GAGTC 1 cut(s) 43
PpsI GAGTC 1 cut(s) 43
Ppu21I YACGTR 1 cut(s) 230
PpuMI RGGWCCY 1 cut(s) 767
Psp5II RGGWCCY 1 cut(s) 767
PspN4I GGNNCC 4 cut(s) 470, 634, 769, 811
PspOMI GGGCCC 1 cut(s) 632
PspPI GGNCC 4 cut(s) 632, 633, 767, 810
PspPPI RGGWCCY 1 cut(s) 767
PsuI RGATCY 2 cut(s) 215, 818
RruI TCGCGA 1 cut(s) 752
RsaI GTAC 2 cut(s) 152, 470
RsaNI GTAC 2 cut(s) 151, 469
RseI CAYNNNNRTG 1 cut(s) 480
SaqAI TTAA 1 cut(s) 399
SatI GCNGC 2 cut(s) 607, 699
Sau3AI GATC 5 cut(s) 215, 267, 494, 517, 818
Sau96I GGNCC 4 cut(s) 632, 633, 767, 810
SchI GAGTC 1 cut(s) 44
SduI GDGCHC 2 cut(s) 636, 737
SfaNI GCATC 3 cut(s) 77, 428, 535
SfuI TTCGAA 1 cut(s) 109
SinI GGWCC 2 cut(s) 767, 810
SmiMI CAYNNNNRTG 1 cut(s) 480
Sse9I AATT 5 cut(s) 46, 387, 463, 675, 780
SseBI AGGCCT 1 cut(s) 7
SsiI CCGC 2 cut(s) 434, 699
SspI AATATT 1 cut(s) 190
SspMI CTAG 1 cut(s) 17
StuI AGGCCT 1 cut(s) 7
TaaI ACNGT 2 cut(s) 315, 646
TaiI ACGT 1 cut(s) 232
TaqI TCGA 1 cut(s) 109
TasI AATT 5 cut(s) 46, 387, 463, 675, 780
TatI WGTACW 1 cut(s) 150
TauI GCSGC 1 cut(s) 701
TfiI GAWTC 2 cut(s) 624, 654
Tru1I TTAA 1 cut(s) 399
Tru9I TTAA 1 cut(s) 399
TscAI CASTG 2 cut(s) 320, 634
TseI GCWGC 1 cut(s) 606
TspDTI ATGAA 3 cut(s) 12, 137, 170
TspGWI ACGGA 2 cut(s) 417, 615
TspRI CASTG 2 cut(s) 320, 634
VpaK11BI GGWCC 2 cut(s) 767, 810
XcmI CCANNNNNNNNNTGG 1 cut(s) 234
XmnI GAANNNNTTC 1 cut(s) 708
XspI CTAG 1 cut(s) 17
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.