Rw4G015270

protein FAR1-RELATED SEQUENCE

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
Physical Location & Seq
Forward (+)
35055893 .. 35056579
687 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G015270.1

Sequence Viewer

Length: 594 bp
ATGTGGCCATTTTTCTTAGGAGCCAAAGATGTGAAGGATGACGGTAATTGTGGTTTTAGAGCTATAGCTGAGTTTATGGGATATGGTGAGAATAATTGGCGTCGTGTACGCAAGGAGTTGTTGCAAGAGTTTAATCGGAATAAGCATGCATATCGATTACTATTCCGATATGCTGAGCGACTGGAGGAGGTGGAGAGGAGATTAGATTATTTTGATGACTTTCTGCCTGAAGCACATTGGTTCTTAATACTAGATATGGGATACGTTGTCGCAAATTGTTACAATATTGTGCTGATGCATTTTGGTTTGCCTTTGATGTCTTGTTTTACCTTCTTACCAATGCATAGTATCCCACTCCCTATAGTTGATCGTTGTGAAATTTCAATTGGTTTTGTCAAAAGATGTCACTTTGTCCAGGTTCATTTGAGGCCATTGCATCCTATGCCACCTGTTATCAATTGTTGGTTTAAATACTCTCTACCTCATGCAAATGGATGGTTAACTCCCTATAGTGATCGTCTTCATAATGGCAAAGATATTTTTTGTCCAGATTATTCAGACAATGAAAAAGTTTATCATCTTGATAGTGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

197

Amino Acids

23.5

Weight (kDa)

6.35

Isoelectric Point (pI)

45.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000143)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G76710 AT1G76710 AT1G76710 AT1G76710
fragaria_vesca FvH4_1g20063 FvH4_2g15231 FvH4_3g04011 FvH4_3g28681 FvH4_4g01411 FvH4_4g10181 FvH4_4g15922 FvH4_4g16651 FvH4_4g16652 FvH4_5g13892 FvH4_5g13893 FvH4_5g20623 FvH4_5g20623 FvH4_5g20623 FvH4_5g20623 FvH4_5g25511 FvH4_6g12551 FvH4_6g12552 FvH4_6g38841 FvH4_7g04391
malus_domestica MD05G1031300.v1.1 MD05G1031400.v1.1 MD05G1031500.v1.1 MD08G1164400.v1.1 MD10G1032900.v1.1 MD10G1033000.v1.1 MD10G1033100.v1.1
prunus_persica Prupe.3G240700_v2.0.a1 Prupe.7G144600_v2.0.a1 Prupe.8G038500_v2.0.a1 Prupe.8G038500_v2.0.a1
pyrus_communis pycom05g02250 pycom05g02260 pycom05g02270 pycom05g02280 pycom08g14160 pycom10g02100 pycom10g02110 pycom10g02130
rosa_chinensis RchiOBHm_Chr1g0329481 RchiOBHm_Chr1g0329491 RchiOBHm_Chr1g0341531 RchiOBHm_Chr3g0464811 RchiOBHm_Chr3g0494701 RchiOBHm_Chr3g0497501 RchiOBHm_Chr4g0385841 RchiOBHm_Chr5g0061181 RchiOBHm_Chr6g0263001 RchiOBHm_Chr7g0193111 RchiOBHm_Chr7g0206281 RchiOBHm_Chr7g0206311
rosa_laevigata RLG00000018908 RLG00000028528 RLG00000028803 RLG00000029882 RLG00000029883 RLG00000030361
rosa_multiflora Rmu_co8196328.1_g000001 Rmu_co8259135.1_g000001 Rmu_co8269185.1_g000001 Rmu_sc0000076.1_g000019 Rmu_sc0000311.1_g000007 Rmu_sc0000429.1_g000038 Rmu_sc0000429.1_g000039 Rmu_sc0000429.1_g000040 Rmu_sc0000511.1_g000005 Rmu_sc0000539.1_g000054 Rmu_sc0000566.1_g000039 Rmu_sc0000805.1_g000032 Rmu_sc0000870.1_g000073 Rmu_sc0000870.1_g000074 Rmu_sc0001010.1_g000018 Rmu_sc0001083.1_g000013 Rmu_sc0001114.1_g000011 Rmu_sc0001702.1_g000027 Rmu_sc0001779.1_g000012 Rmu_sc0002923.1_g000036 Rmu_sc0003242.1_g000011 Rmu_sc0003291.1_g000036 Rmu_sc0003393.1_g000012 Rmu_sc0003872.1_g000016 Rmu_sc0003872.1_g000017 Rmu_sc0003872.1_g000018 Rmu_sc0004084.1_g000020 Rmu_sc0004386.1_g000005 Rmu_sc0004622.1_g000005 Rmu_sc0004742.1_g000021 Rmu_sc0004755.1_g000020 Rmu_sc0004805.1_g000036 Rmu_sc0005065.1_g000006 Rmu_sc0005177.1_g000004 Rmu_sc0006373.1_g000003 Rmu_sc0006373.1_g000004 Rmu_sc0007121.1_g000002 Rmu_sc0007943.1_g000003 Rmu_sc0010368.1_g000006 Rmu_sc0010543.1_g000001 Rmu_sc0012591.1_g000006 Rmu_sc0013504.1_g000009 Rmu_sc0015025.1_g000001 Rmu_sc0016170.1_g000001 Rmu_sc0017156.1_g000001 Rmu_sc0026439.1_g000001
rosa_roxburghii Rroxscaffold_175G00432280 Rroxscaffold_1G00030190 Rroxscaffold_1G00030880 Rroxscaffold_2G00090520 Rroxscaffold_3G00227940 Rroxscaffold_3G00233400 Rroxscaffold_3G00238500 Rroxscaffold_3G00251650 Rroxscaffold_4G00301570 Rroxscaffold_4G00321040 Rroxscaffold_5G00350880 Rroxscaffold_7G00184400
rosa_rugosa Rorug01G0080800 Rorug01G0080900 Rorug01G0193900 Rorug02G0275900 Rorug02G0275900 Rorug02G0275900 Rorug02G0305400 Rorug02G0311800 Rorug02G0350400 Rorug02G0381300 Rorug03G0136700 Rorug03G0181900 Rorug03G0268000 Rorug04G0301600 Rorug05G0175100 Rorug05G0250700 Rorug05G0298200 Rorug05G0596000 Rorug06G0029500 Rorug07G0094300 Rorug07G0094300 Rorug07G0095400 Rorug07G0140100
rosa_samantha Rh1AG099200 Rh1AG190500 Rh1BG078900 Rh1BG079000 Rh1BG079100 Rh1CG084600 Rh1CG084700 Rh1CG095300 Rh1CG175900 Rh1DG103300 Rh1DG150400 Rh2AG079300 Rh2AG272400 Rh2AG464800 Rh2AG507400 Rh2DG078300 Rh2DG078400 Rh3CG206900 Rh3CG295400 Rh3DG206800 Rh3DG356200 Rh4CG071500 Rh4CG179200 Rh4DG064700 Rh5CG362400 Rh7AG212300 Rh7AG226200 Rh7BG222200
rosa_wichuraiana Rw0G009990 Rw0G011260 Rw0G011270 Rw0G012910 Rw0G013740 Rw1G007740 Rw1G013050 Rw1G014230 Rw2G014270 Rw3G012720 Rw3G028110 Rw4G006630 Rw4G015270 Rw4G016160 Rw4G031380 Rw5G011440 Rw5G029180 Rw5G048360 Rw5G048430 Rw5G048780 Rw6G005250 Rw6G006390 Rw7G002840 Rw7G014080 Rw7G019650 Rw7G032790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 5
AcsI RAATTY 1 cut(s) 378
AcuI CTGAAG 1 cut(s) 249
AcyI GRCGYC 1 cut(s) 100
AfaI GTAC 1 cut(s) 108
AgsI TTSAA 1 cut(s) 384
AjnI CCWGG 1 cut(s) 414
AjuI GAANNNNNNNTTGG 2 cut(s) 369, 401
AluBI AGCT 2 cut(s) 62, 68
AluI AGCT 2 cut(s) 62, 68
AoxI GGCC 2 cut(s) 5, 428
ApoI RAATTY 1 cut(s) 378
AsuHPI GGTGA 1 cut(s) 98
BalI TGGCCA 1 cut(s) 7
BbsI GAAGAC 1 cut(s) 512
BccI CCATC 1 cut(s) 489
BcgI CGANNNNNNTGC 2 cut(s) 134, 168
BciT130I CCWGG 1 cut(s) 416
BciVI GTATCC 2 cut(s) 254, 359
BfaI CTAG 1 cut(s) 251
BfmI CTRYAG 3 cut(s) 63, 360, 508
BfuI GTATCC 2 cut(s) 254, 359
BlpI GCTNAGC 1 cut(s) 174
Bme1390I CCNGG 1 cut(s) 416
BmiI GGNNCC 1 cut(s) 22
BmrFI CCNGG 1 cut(s) 416
BmsI GCATC 2 cut(s) 285, 445
BpiI GAAGAC 1 cut(s) 512
BpmI CTGGAG 1 cut(s) 203
Bpu1102I GCTNAGC 1 cut(s) 174
Bsa29I ATCGAT 1 cut(s) 154
BsaHI GRCGYC 1 cut(s) 100
Bse1I ACTGG 1 cut(s) 186
Bse3DI GCAATG 1 cut(s) 431
BseBI CCWGG 1 cut(s) 416
BseCI ATCGAT 1 cut(s) 154
BseGI GGATG 3 cut(s) 43, 436, 500
BseMI GCAATG 1 cut(s) 431
BseMII CTCAG 2 cut(s) 60, 165
BseNI ACTGG 1 cut(s) 186
BseRI GAGGAG 2 cut(s) 200, 211
BshFI GGCC 2 cut(s) 7, 430
BshVI ATCGAT 1 cut(s) 154
BsnI GGCC 2 cut(s) 7, 430
Bsp143I GATC 2 cut(s) 367, 514
Bsp1720I GCTNAGC 1 cut(s) 174
BspANI GGCC 2 cut(s) 7, 430
BspCNI CTCAG 2 cut(s) 61, 166
BspDI ATCGAT 1 cut(s) 154
BspLI GGNNCC 1 cut(s) 22
BsrDI GCAATG 1 cut(s) 431
BsrI ACTGG 1 cut(s) 186
BssMI GATC 2 cut(s) 367, 514
BssNI GRCGYC 1 cut(s) 100
Bst2UI CCWGG 1 cut(s) 416
Bst4CI ACNGT 1 cut(s) 44
BstACI GRCGYC 1 cut(s) 100
BstAPI GCANNNNNTGC 1 cut(s) 442
BstC8I GCNNGC 1 cut(s) 147
BstDEI CTNAG 3 cut(s) 16, 69, 174
BstF5I GGATG 3 cut(s) 43, 436, 500
BstKTI GATC 2 cut(s) 370, 517
BstMBI GATC 2 cut(s) 367, 514
BstMWI GCNNNNNNNGC 1 cut(s) 442
BstNI CCWGG 1 cut(s) 416
BstNSI RCATGY 1 cut(s) 149
BstSCI CCNGG 1 cut(s) 414
BstSFI CTRYAG 3 cut(s) 63, 360, 508
BstV2I GAAGAC 1 cut(s) 512
Bsu15I ATCGAT 1 cut(s) 154
BsuI GTATCC 2 cut(s) 254, 359
BsuRI GGCC 2 cut(s) 7, 430
BsuTUI ATCGAT 1 cut(s) 154
BtsCI GGATG 3 cut(s) 43, 436, 500
Cac8I GCNNGC 1 cut(s) 147
ClaI ATCGAT 1 cut(s) 154
CseI GACGC 1 cut(s) 89
Csp6I GTAC 1 cut(s) 107
CviAII CATG 2 cut(s) 146, 485
CviJI RGCY 5 cut(s) 7, 23, 62, 68, 430
CviKI_1 RGCY 5 cut(s) 7, 23, 62, 68, 430
CviQI GTAC 1 cut(s) 107
DdeI CTNAG 3 cut(s) 16, 69, 174
DpnI GATC 2 cut(s) 369, 516
DpnII GATC 2 cut(s) 367, 514
DraI TTTAAA 1 cut(s) 469
EaeI YGGCCR 1 cut(s) 5
Eco57I CTGAAG 1 cut(s) 249
EcoRII CCWGG 1 cut(s) 414
EcoT22I ATGCAT 3 cut(s) 151, 300, 345
FaeI CATG 2 cut(s) 149, 488
FatI CATG 2 cut(s) 145, 484
FokI GGATG 3 cut(s) 50, 423, 507
FspBI CTAG 1 cut(s) 251
GsuI CTGGAG 1 cut(s) 203
HaeIII GGCC 2 cut(s) 7, 430
HgaI GACGC 1 cut(s) 89
Hin1I GRCGYC 1 cut(s) 100
Hin1II CATG 2 cut(s) 149, 488
HincII GTYRAC 1 cut(s) 501
HindII GTYRAC 1 cut(s) 501
HpaI GTTAAC 1 cut(s) 501
HphI GGTGA 1 cut(s) 98
Hpy166II GTNNAC 2 cut(s) 107, 501
Hpy188I TCNGA 3 cut(s) 138, 167, 559
Hpy188III TCNNGA 2 cut(s) 548, 581
Hpy8I GTNNAC 2 cut(s) 107, 501
Hpy99I CGWCG 1 cut(s) 105
HpyAV CCTTC 2 cut(s) 28, 340
HpyCH4III ACNGT 1 cut(s) 44
HpyCH4IV ACGT 1 cut(s) 264
HpyCH4V TGCA 6 cut(s) 124, 149, 298, 343, 436, 488
HpyF10VI GCNNNNNNNGC 1 cut(s) 442
HpyF3I CTNAG 3 cut(s) 16, 69, 174
HpySE526I ACGT 1 cut(s) 264
Hsp92I GRCGYC 1 cut(s) 100
Hsp92II CATG 2 cut(s) 149, 488
KspAI GTTAAC 1 cut(s) 501
Kzo9I GATC 2 cut(s) 367, 514
LmnI GCTCC 1 cut(s) 20
LpnPI CCDG 6 cut(s) 167, 240, 401, 428, 462, 561
LweI GCATC 2 cut(s) 285, 445
MaeI CTAG 1 cut(s) 251
MaeII ACGT 1 cut(s) 264
MaeIII GTNAC 2 cut(s) 278, 404
MalI GATC 2 cut(s) 369, 516
MboI GATC 2 cut(s) 367, 514
MboII GAAGA 1 cut(s) 512
MfeI CAATTG 2 cut(s) 384, 457
MlsI TGGCCA 1 cut(s) 7
MluCI AATT 6 cut(s) 46, 94, 274, 378, 384, 457
MluNI TGGCCA 1 cut(s) 7
MnlI CCTC 5 cut(s) 178, 181, 189, 420, 492
Mox20I TGGCCA 1 cut(s) 7
Mph1103I ATGCAT 3 cut(s) 151, 300, 345
MscI TGGCCA 1 cut(s) 7
MseI TTAA 4 cut(s) 132, 245, 468, 500
MslI CAYNNNNRTG 1 cut(s) 489
Msp20I TGGCCA 1 cut(s) 7
MspR9I CCNGG 1 cut(s) 416
MunI CAATTG 2 cut(s) 384, 457
MvaI CCWGG 1 cut(s) 416
MwoI GCNNNNNNNGC 1 cut(s) 442
NdeII GATC 2 cut(s) 367, 514
NlaIII CATG 2 cut(s) 149, 488
NlaIV GGNNCC 1 cut(s) 22
NmuCI GTSAC 1 cut(s) 404
NsiI ATGCAT 3 cut(s) 151, 300, 345
NspI RCATGY 1 cut(s) 149
PaeI GCATGC 1 cut(s) 149
Psp6I CCWGG 1 cut(s) 414
PspGI CCWGG 1 cut(s) 414
PspN4I GGNNCC 1 cut(s) 22
RsaI GTAC 1 cut(s) 108
RsaNI GTAC 1 cut(s) 107
RseI CAYNNNNRTG 1 cut(s) 489
SaqAI TTAA 4 cut(s) 132, 245, 468, 500
Sau3AI GATC 2 cut(s) 367, 514
ScrFI CCNGG 1 cut(s) 416
SetI ASST 8 cut(s) 64, 70, 192, 267, 332, 420, 451, 484
SfaNI GCATC 2 cut(s) 285, 445
SfcI CTRYAG 3 cut(s) 63, 360, 508
SmiMI CAYNNNNRTG 1 cut(s) 489
SphI GCATGC 1 cut(s) 149
Sse9I AATT 6 cut(s) 46, 94, 274, 378, 384, 457
SspI AATATT 1 cut(s) 286
SspMI CTAG 1 cut(s) 251
StyD4I CCNGG 1 cut(s) 414
TaaI ACNGT 1 cut(s) 44
TaiI ACGT 1 cut(s) 267
TaqI TCGA 1 cut(s) 154
TasI AATT 6 cut(s) 46, 94, 274, 378, 384, 457
Tru1I TTAA 4 cut(s) 132, 245, 468, 500
Tru9I TTAA 4 cut(s) 132, 245, 468, 500
TseFI GTSAC 1 cut(s) 404
Tsp45I GTSAC 1 cut(s) 404
TspDTI ATGAA 3 cut(s) 410, 512, 579
XapI RAATTY 1 cut(s) 378
XceI RCATGY 1 cut(s) 149
XspI CTAG 1 cut(s) 251
Zsp2I ATGCAT 3 cut(s) 151, 300, 345
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.