Rw2G014270

protein FAR1-RELATED SEQUENCE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0000143
Physical Location & Seq
Reverse (-)
15933767 .. 15935158
1392 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G014270.1

Sequence Viewer

Length: 1080 bp
ATGGAATATAGGGTTGACGCAGTTGGAGTTAATGTTGTATCATGTGGTTGTGCCATTCGCCGCACGCACCAATTACCATGTGCACATGAGATTGCTGAATATCGAAATTCCCATCAGCCTATCCCAATTGATGCTATCCATTCTCATTGGAGACGGTTAAGTGTAGGTAATTTTTTGGAGGAAATTGATCCCCAAGAAAAAGTTATGGTAAGACCACGTTTGACACAATTACAAAAATGGTTGGAAGAACAAGATGATGAAACCAAGAGACAAGTTTTGCTCAAGATTGATGAGCTTATAAATCCAAGTTGCACAATGCTTCAAGAACCAAATGAGAAGATTAAAACCAAAGGGCGTCCTTCTAAGATTGACAGTAGTACTCGTCGTCTACCATCTACTTTTGAGATTGCCAAGGCTTTTTCCGTACATGGAAGTCAGTCACAAGTACCACCTGAAAAGGTTGTTAATGCATCTCCTAGAACTGTGTTGCCTTCTACGAAATCAAATAAGCATCCAGAGAAAAATCAGGTCACTTCACCATTTGATCTAACACAAAAATATACAGCGCAATTTGTGTTCGGTATGAGGCCTTACATTCTAGGTTCATTTGATGTTGAGTCTGATGGTAATTGTGGTTATAGAGTTGTAGCATCGGCTATGGGATTTGATAGGCGTTTTTGGCGAAGAGTTCGAATAGACCTAATGAATGAGCTAAAAAGTATGCCCCACTTGTACATGAAACTATATGGTAGCGAAGGCAGTGTAGAGAATATCAAACAGAGACTAAACCATTCTGGATCTACTGCACCACGTAGAAAATGGATGTGTATAACAGAGATGGGGCATTTGATAGCTACTTGCTATGGAGTTGTTGCGATAAACTTATCTGATAAACAGTCGGGATGCCCATTACTACCAATCCCACCAAATTGGTACCCTCATGCTGATGATAAAGCAAGATTATTATACAATAGATACAAGGATCGTCTGCATCAATATACCCAGATACCCCATCCAGAAAGAGTTACTGCTATTTCCGAAATTATAACTCTTGAGACTGATGAGACTATGTTTGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AFT FAR1 MULE

Protein Analysis

359

Amino Acids

41.26

Weight (kDa)

8.8

Isoelectric Point (pI)

49.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000143)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G76710 AT1G76710 AT1G76710 AT1G76710
fragaria_vesca FvH4_1g20063 FvH4_2g15231 FvH4_3g04011 FvH4_3g28681 FvH4_4g01411 FvH4_4g10181 FvH4_4g15922 FvH4_4g16651 FvH4_4g16652 FvH4_5g13892 FvH4_5g13893 FvH4_5g20623 FvH4_5g20623 FvH4_5g20623 FvH4_5g20623 FvH4_5g25511 FvH4_6g12551 FvH4_6g12552 FvH4_6g38841 FvH4_7g04391
malus_domestica MD05G1031300.v1.1 MD05G1031400.v1.1 MD05G1031500.v1.1 MD08G1164400.v1.1 MD10G1032900.v1.1 MD10G1033000.v1.1 MD10G1033100.v1.1
prunus_persica Prupe.3G240700_v2.0.a1 Prupe.7G144600_v2.0.a1 Prupe.8G038500_v2.0.a1 Prupe.8G038500_v2.0.a1
pyrus_communis pycom05g02250 pycom05g02260 pycom05g02270 pycom05g02280 pycom08g14160 pycom10g02100 pycom10g02110 pycom10g02130
rosa_chinensis RchiOBHm_Chr1g0329481 RchiOBHm_Chr1g0329491 RchiOBHm_Chr1g0341531 RchiOBHm_Chr3g0464811 RchiOBHm_Chr3g0494701 RchiOBHm_Chr3g0497501 RchiOBHm_Chr4g0385841 RchiOBHm_Chr5g0061181 RchiOBHm_Chr6g0263001 RchiOBHm_Chr7g0193111 RchiOBHm_Chr7g0206281 RchiOBHm_Chr7g0206311
rosa_laevigata RLG00000018908 RLG00000028528 RLG00000028803 RLG00000029882 RLG00000029883 RLG00000030361
rosa_multiflora Rmu_co8196328.1_g000001 Rmu_co8259135.1_g000001 Rmu_co8269185.1_g000001 Rmu_sc0000076.1_g000019 Rmu_sc0000311.1_g000007 Rmu_sc0000429.1_g000038 Rmu_sc0000429.1_g000039 Rmu_sc0000429.1_g000040 Rmu_sc0000511.1_g000005 Rmu_sc0000539.1_g000054 Rmu_sc0000566.1_g000039 Rmu_sc0000805.1_g000032 Rmu_sc0000870.1_g000073 Rmu_sc0000870.1_g000074 Rmu_sc0001010.1_g000018 Rmu_sc0001083.1_g000013 Rmu_sc0001114.1_g000011 Rmu_sc0001702.1_g000027 Rmu_sc0001779.1_g000012 Rmu_sc0002923.1_g000036 Rmu_sc0003242.1_g000011 Rmu_sc0003291.1_g000036 Rmu_sc0003393.1_g000012 Rmu_sc0003872.1_g000016 Rmu_sc0003872.1_g000017 Rmu_sc0003872.1_g000018 Rmu_sc0004084.1_g000020 Rmu_sc0004386.1_g000005 Rmu_sc0004622.1_g000005 Rmu_sc0004742.1_g000021 Rmu_sc0004755.1_g000020 Rmu_sc0004805.1_g000036 Rmu_sc0005065.1_g000006 Rmu_sc0005177.1_g000004 Rmu_sc0006373.1_g000003 Rmu_sc0006373.1_g000004 Rmu_sc0007121.1_g000002 Rmu_sc0007943.1_g000003 Rmu_sc0010368.1_g000006 Rmu_sc0010543.1_g000001 Rmu_sc0012591.1_g000006 Rmu_sc0013504.1_g000009 Rmu_sc0015025.1_g000001 Rmu_sc0016170.1_g000001 Rmu_sc0017156.1_g000001 Rmu_sc0026439.1_g000001
rosa_roxburghii Rroxscaffold_175G00432280 Rroxscaffold_1G00030190 Rroxscaffold_1G00030880 Rroxscaffold_2G00090520 Rroxscaffold_3G00227940 Rroxscaffold_3G00233400 Rroxscaffold_3G00238500 Rroxscaffold_3G00251650 Rroxscaffold_4G00301570 Rroxscaffold_4G00321040 Rroxscaffold_5G00350880 Rroxscaffold_7G00184400
rosa_rugosa Rorug01G0080800 Rorug01G0080900 Rorug01G0193900 Rorug02G0275900 Rorug02G0275900 Rorug02G0275900 Rorug02G0305400 Rorug02G0311800 Rorug02G0350400 Rorug02G0381300 Rorug03G0136700 Rorug03G0181900 Rorug03G0268000 Rorug04G0301600 Rorug05G0175100 Rorug05G0250700 Rorug05G0298200 Rorug05G0596000 Rorug06G0029500 Rorug07G0094300 Rorug07G0094300 Rorug07G0095400 Rorug07G0140100
rosa_samantha Rh1AG099200 Rh1AG190500 Rh1BG078900 Rh1BG079000 Rh1BG079100 Rh1CG084600 Rh1CG084700 Rh1CG095300 Rh1CG175900 Rh1DG103300 Rh1DG150400 Rh2AG079300 Rh2AG272400 Rh2AG464800 Rh2AG507400 Rh2DG078300 Rh2DG078400 Rh3CG206900 Rh3CG295400 Rh3DG206800 Rh3DG356200 Rh4CG071500 Rh4CG179200 Rh4DG064700 Rh5CG362400 Rh7AG212300 Rh7AG226200 Rh7BG222200
rosa_wichuraiana Rw0G009990 Rw0G011260 Rw0G011270 Rw0G012910 Rw0G013740 Rw1G007740 Rw1G013050 Rw1G014230 Rw2G014270 Rw3G012720 Rw3G028110 Rw4G006630 Rw4G015270 Rw4G016160 Rw4G031380 Rw5G011440 Rw5G029180 Rw5G048360 Rw5G048430 Rw5G048780 Rw6G005250 Rw6G006390 Rw7G002840 Rw7G014080 Rw7G019650 Rw7G032790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 299, 1046
Acc65I GGTACC 1 cut(s) 933
AccB1I GGYRCC 1 cut(s) 933
AccI GTMKAC 1 cut(s) 388
AciI CCGC 1 cut(s) 61
AclWI GGATC 3 cut(s) 182, 805, 990
AcsI RAATTY 1 cut(s) 106
AcyI GRCGYC 1 cut(s) 355
AfaI GTAC 5 cut(s) 379, 426, 447, 734, 935
AgsI TTSAA 2 cut(s) 323, 1076
AluBI AGCT 3 cut(s) 295, 712, 854
AluI AGCT 3 cut(s) 295, 712, 854
Alw21I GWGCWC 1 cut(s) 85
Alw26I GTCTC 5 cut(s) 145, 262, 775, 1049, 1058
Alw44I GTGCAC 1 cut(s) 81
AlwI GGATC 3 cut(s) 182, 805, 990
AoxI GGCC 1 cut(s) 587
ApaLI GTGCAC 1 cut(s) 81
ApoI RAATTY 1 cut(s) 106
Asp718I GGTACC 1 cut(s) 933
AspLEI GCGC 1 cut(s) 568
AsuHPI GGTGA 1 cut(s) 528
AsuII TTCGAA 1 cut(s) 691
BaeGI GKGCMC 1 cut(s) 85
BanI GGYRCC 1 cut(s) 933
Bbv12I GWGCWC 1 cut(s) 85
BccI CCATC 5 cut(s) 120, 400, 617, 832, 1020
BcoDI GTCTC 5 cut(s) 145, 262, 775, 1049, 1058
BfaI CTAG 2 cut(s) 477, 599
BisI GCNGC 1 cut(s) 61
BlsI GCNGC 1 cut(s) 62
BmcAI AGTACT 1 cut(s) 379
BmiI GGNNCC 1 cut(s) 935
BmsI GCATC 6 cut(s) 121, 479, 520, 659, 893, 1000
Bpu14I TTCGAA 1 cut(s) 691
BpuEI CTTGAG 2 cut(s) 266, 1073
BsaAI YACGTR 1 cut(s) 812
BsaHI GRCGYC 1 cut(s) 355
BsaJI CCNNGG 1 cut(s) 411
BsaXI ACNNNNNCTCC 2 cut(s) 18, 48
BseDI CCNNGG 1 cut(s) 411
BseGI GGATG 4 cut(s) 511, 828, 908, 1012
BseSI GKGCMC 1 cut(s) 85
BsgI GTGCAG 1 cut(s) 789
BshFI GGCC 1 cut(s) 589
BshNI GGYRCC 1 cut(s) 933
BsiHKAI GWGCWC 1 cut(s) 85
BsmAI GTCTC 5 cut(s) 145, 262, 775, 1049, 1058
BsmBI CGTCTC 1 cut(s) 145
BsnI GGCC 1 cut(s) 589
Bsp119I TTCGAA 1 cut(s) 691
Bsp1286I GDGCHC 1 cut(s) 85
Bsp1407I TGTACA 1 cut(s) 732
Bsp143I GATC 4 cut(s) 187, 544, 797, 982
BspACI CCGC 1 cut(s) 61
BspANI GGCC 1 cut(s) 589
BspLI GGNNCC 1 cut(s) 935
BspPI GGATC 3 cut(s) 182, 805, 990
BspT104I TTCGAA 1 cut(s) 691
BspT107I GGYRCC 1 cut(s) 933
BsrGI TGTACA 1 cut(s) 732
BssECI CCNNGG 1 cut(s) 411
BssMI GATC 4 cut(s) 187, 544, 797, 982
BssNI GRCGYC 1 cut(s) 355
BssT1I CCWWGG 1 cut(s) 411
Bst4CI ACNGT 4 cut(s) 156, 374, 484, 897
Bst6I CTCTTC 1 cut(s) 679
BstACI GRCGYC 1 cut(s) 355
BstAUI TGTACA 1 cut(s) 732
BstBAI YACGTR 1 cut(s) 812
BstBI TTCGAA 1 cut(s) 691
BstC8I GCNNGC 1 cut(s) 65
BstDEI CTNAG 1 cut(s) 363
BstF5I GGATG 4 cut(s) 511, 828, 908, 1012
BstHHI GCGC 1 cut(s) 568
BstKTI GATC 4 cut(s) 190, 547, 800, 985
BstMAI GTCTC 5 cut(s) 145, 262, 775, 1049, 1058
BstMBI GATC 4 cut(s) 187, 544, 797, 982
BstMWI GCNNNNNNNGC 1 cut(s) 679
BstSLI GKGCMC 1 cut(s) 85
BstX2I RGATCY 1 cut(s) 797
BstXI CCANNNNNNTGG 1 cut(s) 930
BstYI RGATCY 1 cut(s) 797
BsuRI GGCC 1 cut(s) 589
BtsCI GGATG 4 cut(s) 511, 828, 908, 1012
BtsI GCAGTG 1 cut(s) 766
BtsIMutI CAGTG 1 cut(s) 766
Cac8I GCNNGC 1 cut(s) 65
CfoI GCGC 1 cut(s) 568
CseI GACGC 2 cut(s) 26, 344
Csp6I GTAC 5 cut(s) 378, 425, 446, 733, 934
CviAII CATG 6 cut(s) 42, 78, 86, 428, 736, 941
CviJI RGCY 7 cut(s) 118, 295, 416, 589, 656, 712, 854
CviKI_1 RGCY 7 cut(s) 118, 295, 416, 589, 656, 712, 854
CviQI GTAC 5 cut(s) 378, 425, 446, 733, 934
DdeI CTNAG 1 cut(s) 363
DpnI GATC 4 cut(s) 189, 546, 799, 984
DpnII GATC 4 cut(s) 187, 544, 797, 982
Eam1104I CTCTTC 1 cut(s) 679
EarI CTCTTC 1 cut(s) 679
Eco130I CCWWGG 1 cut(s) 411
Eco147I AGGCCT 1 cut(s) 589
EcoT14I CCWWGG 1 cut(s) 411
EcoT22I ATGCAT 1 cut(s) 472
ErhI CCWWGG 1 cut(s) 411
Esp3I CGTCTC 1 cut(s) 145
FaeI CATG 6 cut(s) 45, 81, 89, 431, 739, 944
FatI CATG 6 cut(s) 41, 77, 85, 427, 735, 940
FblI GTMKAC 1 cut(s) 388
Fnu4HI GCNGC 1 cut(s) 61
FokI GGATG 4 cut(s) 498, 835, 915, 999
Fsp4HI GCNGC 1 cut(s) 61
FspBI CTAG 2 cut(s) 477, 599
GlaI GCGC 1 cut(s) 567
GluI GCNGC 1 cut(s) 61
HaeIII GGCC 1 cut(s) 589
HgaI GACGC 2 cut(s) 26, 344
HhaI GCGC 1 cut(s) 568
Hin1I GRCGYC 1 cut(s) 355
Hin1II CATG 6 cut(s) 45, 81, 89, 431, 739, 944
Hin6I GCGC 1 cut(s) 566
HinP1I GCGC 1 cut(s) 566
HincII GTYRAC 1 cut(s) 16
HindII GTYRAC 1 cut(s) 16
HinfI GANTC 1 cut(s) 617
HphI GGTGA 1 cut(s) 528
Hpy166II GTNNAC 3 cut(s) 16, 83, 389
Hpy188I TCNGA 3 cut(s) 622, 889, 1039
Hpy188III TCNNGA 7 cut(s) 283, 323, 515, 795, 900, 1016, 1052
Hpy8I GTNNAC 3 cut(s) 16, 83, 389
Hpy99I CGWCG 1 cut(s) 387
HpyAV CCTTC 3 cut(s) 369, 501, 749
HpyCH4III ACNGT 4 cut(s) 156, 374, 484, 897
HpyCH4IV ACGT 2 cut(s) 217, 811
HpyCH4V TGCA 5 cut(s) 83, 312, 470, 806, 991
HpyF10VI GCNNNNNNNGC 1 cut(s) 679
HpyF3I CTNAG 1 cut(s) 363
HpySE526I ACGT 2 cut(s) 217, 811
Hsp92I GRCGYC 1 cut(s) 355
Hsp92II CATG 6 cut(s) 45, 81, 89, 431, 739, 944
HspAI GCGC 1 cut(s) 566
KpnI GGTACC 1 cut(s) 937
Kzo9I GATC 4 cut(s) 187, 544, 797, 982
LpnPI CCDG 6 cut(s) 465, 512, 528, 780, 1016, 1029
LweI GCATC 6 cut(s) 121, 479, 520, 659, 893, 1000
MaeI CTAG 2 cut(s) 477, 599
MaeII ACGT 2 cut(s) 217, 811
MaeIII GTNAC 3 cut(s) 438, 529, 1024
MalI GATC 4 cut(s) 189, 546, 799, 984
MboI GATC 4 cut(s) 187, 544, 797, 982
MboII GAAGA 3 cut(s) 257, 349, 696
MfeI CAATTG 1 cut(s) 126
MflI RGATCY 1 cut(s) 797
MhlI GDGCHC 1 cut(s) 85
MlyI GAGTC 1 cut(s) 626
MmeI TCCRAC 2 cut(s) 4, 222
MnlI CCTC 3 cut(s) 172, 579, 948
Mph1103I ATGCAT 1 cut(s) 472
MseI TTAA 4 cut(s) 30, 158, 342, 465
MslI CAYNNNNRTG 1 cut(s) 945
MunI CAATTG 1 cut(s) 126
MwoI GCNNNNNNNGC 1 cut(s) 679
NdeII GATC 4 cut(s) 187, 544, 797, 982
NlaIII CATG 6 cut(s) 45, 81, 89, 431, 739, 944
NlaIV GGNNCC 1 cut(s) 935
NmuCI GTSAC 2 cut(s) 438, 529
NsiI ATGCAT 1 cut(s) 472
NspV TTCGAA 1 cut(s) 691
PceI AGGCCT 1 cut(s) 589
PkrI GCNGC 1 cut(s) 62
PleI GAGTC 1 cut(s) 625
PpsI GAGTC 1 cut(s) 625
Ppu21I YACGTR 1 cut(s) 812
PsiI TTATAA 2 cut(s) 299, 1046
PspN4I GGNNCC 1 cut(s) 935
PsuI RGATCY 1 cut(s) 797
RsaI GTAC 5 cut(s) 379, 426, 447, 734, 935
RsaNI GTAC 5 cut(s) 378, 425, 446, 733, 934
RseI CAYNNNNRTG 1 cut(s) 945
SaqAI TTAA 4 cut(s) 30, 158, 342, 465
SatI GCNGC 1 cut(s) 61
Sau3AI GATC 4 cut(s) 187, 544, 797, 982
ScaI AGTACT 1 cut(s) 379
SchI GAGTC 1 cut(s) 626
SduI GDGCHC 1 cut(s) 85
SfaNI GCATC 6 cut(s) 121, 479, 520, 659, 893, 1000
SfuI TTCGAA 1 cut(s) 691
SmiMI CAYNNNNRTG 1 cut(s) 945
SmlI CTYRAG 2 cut(s) 281, 1052
SmoI CTYRAG 2 cut(s) 281, 1052
SseBI AGGCCT 1 cut(s) 589
SsiI CCGC 1 cut(s) 61
SspMI CTAG 2 cut(s) 477, 599
StuI AGGCCT 1 cut(s) 589
StyI CCWWGG 1 cut(s) 411
TaaI ACNGT 4 cut(s) 156, 374, 484, 897
TaiI ACGT 2 cut(s) 220, 814
TaqI TCGA 2 cut(s) 103, 691
TatI WGTACW 2 cut(s) 377, 732
TauI GCSGC 1 cut(s) 63
Tru1I TTAA 4 cut(s) 30, 158, 342, 465
Tru9I TTAA 4 cut(s) 30, 158, 342, 465
TscAI CASTG 1 cut(s) 766
TseFI GTSAC 2 cut(s) 438, 529
Tsp45I GTSAC 2 cut(s) 438, 529
TspDTI ATGAA 4 cut(s) 273, 594, 719, 752
TspGWI ACGGA 1 cut(s) 412
TspRI CASTG 1 cut(s) 766
VneI GTGCAC 1 cut(s) 81
XapI RAATTY 1 cut(s) 106
XcmI CCANNNNNNNNNTGG 1 cut(s) 816
XmiI GTMKAC 1 cut(s) 388
XspI CTAG 2 cut(s) 477, 599
ZrmI AGTACT 1 cut(s) 379
Zsp2I ATGCAT 1 cut(s) 472
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.