Rmu_sc0017156.1_g000001

protein FAR1-RELATED SEQUENCE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0017156.1
OG0000143
Physical Location & Seq
Reverse (-)
1 .. 2612
2612 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0017156.1_g000001.1.cds

Sequence Viewer

Length: 827 bp
atgcagccttatattgtaggtgcatatgatgttgaatctgattgcaactgtggatatagagttgtggcttcagcaatgggttttggtcggaaatcctggcgcaaagttcgtagggatttattaaacgagttgcatagtatgcgagaactgtatgtaattctctttggtggaactgaggttgagaaggttcagcagacgcttaaccattatggctctggaaatgcaacagaaaagtattggatgtactttcccgaaatggggcatttaattgcaacatgttatggtgtagtggtaatatttctatcagaagggcaatgcataacattcctccccctagtagaacacaagattgggcagttcagtaatgatgagctcaaagagattggaattggccatgtgaacgaaaaccattttgtgcatgaacccaaaaccggcggcaccacccccaaaaccggctggaatcaacttgaaccgaccactggaagtctgcacctcgtccccaaaatccggaacctgaaaaatcaccaccggaaccggccaaaattcaaccgaaccgaccattggcgtccacttgacctgaaccggcagaaagaaaaaaaggaagagatcctctgcagcccacaatcaagcccaactgctacagcccacagtcgagcacacgtgcaagccgccaagctgcactgccatgtcagcaccgaatctgccacgtcagcacccccgttcaacggtcagtcaaccctcccgtcaacggccagtcaacaccggatgagttacctgaacaagctaaactttgttccactagagacaactggcgcaggataccatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AFT FAR1 MULE

Protein Analysis

275

Amino Acids

31.06

Weight (kDa)

8.82

Isoelectric Point (pI)

41.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000143)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G76710 AT1G76710 AT1G76710 AT1G76710
fragaria_vesca FvH4_1g20063 FvH4_2g15231 FvH4_3g04011 FvH4_3g28681 FvH4_4g01411 FvH4_4g10181 FvH4_4g15922 FvH4_4g16651 FvH4_4g16652 FvH4_5g13892 FvH4_5g13893 FvH4_5g20623 FvH4_5g20623 FvH4_5g20623 FvH4_5g20623 FvH4_5g25511 FvH4_6g12551 FvH4_6g12552 FvH4_6g38841 FvH4_7g04391
malus_domestica MD05G1031300.v1.1 MD05G1031400.v1.1 MD05G1031500.v1.1 MD08G1164400.v1.1 MD10G1032900.v1.1 MD10G1033000.v1.1 MD10G1033100.v1.1
prunus_persica Prupe.3G240700_v2.0.a1 Prupe.7G144600_v2.0.a1 Prupe.8G038500_v2.0.a1 Prupe.8G038500_v2.0.a1
pyrus_communis pycom05g02250 pycom05g02260 pycom05g02270 pycom05g02280 pycom08g14160 pycom10g02100 pycom10g02110 pycom10g02130
rosa_chinensis RchiOBHm_Chr1g0329481 RchiOBHm_Chr1g0329491 RchiOBHm_Chr1g0341531 RchiOBHm_Chr3g0464811 RchiOBHm_Chr3g0494701 RchiOBHm_Chr3g0497501 RchiOBHm_Chr4g0385841 RchiOBHm_Chr5g0061181 RchiOBHm_Chr6g0263001 RchiOBHm_Chr7g0193111 RchiOBHm_Chr7g0206281 RchiOBHm_Chr7g0206311
rosa_laevigata RLG00000018908 RLG00000028528 RLG00000028803 RLG00000029882 RLG00000029883 RLG00000030361
rosa_multiflora Rmu_co8196328.1_g000001 Rmu_co8259135.1_g000001 Rmu_co8269185.1_g000001 Rmu_sc0000076.1_g000019 Rmu_sc0000311.1_g000007 Rmu_sc0000429.1_g000038 Rmu_sc0000429.1_g000039 Rmu_sc0000429.1_g000040 Rmu_sc0000511.1_g000005 Rmu_sc0000539.1_g000054 Rmu_sc0000566.1_g000039 Rmu_sc0000805.1_g000032 Rmu_sc0000870.1_g000073 Rmu_sc0000870.1_g000074 Rmu_sc0001010.1_g000018 Rmu_sc0001083.1_g000013 Rmu_sc0001114.1_g000011 Rmu_sc0001702.1_g000027 Rmu_sc0001779.1_g000012 Rmu_sc0002923.1_g000036 Rmu_sc0003242.1_g000011 Rmu_sc0003291.1_g000036 Rmu_sc0003393.1_g000012 Rmu_sc0003872.1_g000016 Rmu_sc0003872.1_g000017 Rmu_sc0003872.1_g000018 Rmu_sc0004084.1_g000020 Rmu_sc0004386.1_g000005 Rmu_sc0004622.1_g000005 Rmu_sc0004742.1_g000021 Rmu_sc0004755.1_g000020 Rmu_sc0004805.1_g000036 Rmu_sc0005065.1_g000006 Rmu_sc0005177.1_g000004 Rmu_sc0006373.1_g000003 Rmu_sc0006373.1_g000004 Rmu_sc0007121.1_g000002 Rmu_sc0007943.1_g000003 Rmu_sc0010368.1_g000006 Rmu_sc0010543.1_g000001 Rmu_sc0012591.1_g000006 Rmu_sc0013504.1_g000009 Rmu_sc0015025.1_g000001 Rmu_sc0016170.1_g000001 Rmu_sc0017156.1_g000001 Rmu_sc0026439.1_g000001
rosa_roxburghii Rroxscaffold_175G00432280 Rroxscaffold_1G00030190 Rroxscaffold_1G00030880 Rroxscaffold_2G00090520 Rroxscaffold_3G00227940 Rroxscaffold_3G00233400 Rroxscaffold_3G00238500 Rroxscaffold_3G00251650 Rroxscaffold_4G00301570 Rroxscaffold_4G00321040 Rroxscaffold_5G00350880 Rroxscaffold_7G00184400
rosa_rugosa Rorug01G0080800 Rorug01G0080900 Rorug01G0193900 Rorug02G0275900 Rorug02G0275900 Rorug02G0275900 Rorug02G0305400 Rorug02G0311800 Rorug02G0350400 Rorug02G0381300 Rorug03G0136700 Rorug03G0181900 Rorug03G0268000 Rorug04G0301600 Rorug05G0175100 Rorug05G0250700 Rorug05G0298200 Rorug05G0596000 Rorug06G0029500 Rorug07G0094300 Rorug07G0094300 Rorug07G0095400 Rorug07G0140100
rosa_samantha Rh1AG099200 Rh1AG190500 Rh1BG078900 Rh1BG079000 Rh1BG079100 Rh1CG084600 Rh1CG084700 Rh1CG095300 Rh1CG175900 Rh1DG103300 Rh1DG150400 Rh2AG079300 Rh2AG272400 Rh2AG464800 Rh2AG507400 Rh2DG078300 Rh2DG078400 Rh3CG206900 Rh3CG295400 Rh3DG206800 Rh3DG356200 Rh4CG071500 Rh4CG179200 Rh4DG064700 Rh5CG362400 Rh7AG212300 Rh7AG226200 Rh7BG222200
rosa_wichuraiana Rw0G009990 Rw0G011260 Rw0G011270 Rw0G012910 Rw0G013740 Rw1G007740 Rw1G013050 Rw1G014230 Rw2G014270 Rw3G012720 Rw3G028110 Rw4G006630 Rw4G015270 Rw4G016160 Rw4G031380 Rw5G011440 Rw5G029180 Rw5G048360 Rw5G048430 Rw5G048780 Rw6G005250 Rw6G006390 Rw7G002840 Rw7G014080 Rw7G019650 Rw7G032790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 437
AccIII TCCGGA 1 cut(s) 507
AciI CCGC 2 cut(s) 435, 669
AclWI GGATC 1 cut(s) 601
AcoI YGGCCR 3 cut(s) 391, 536, 750
AcsI RAATTY 1 cut(s) 542
AcuI CTGAAG 1 cut(s) 54
AcvI CACGTG 1 cut(s) 661
AcyI GRCGYC 1 cut(s) 565
AfaI GTAC 1 cut(s) 245
AfiI CCNNNNNNNGG 9 cut(s) 257, 258, 431, 452, 479, 507, 561, 725, 748
AflIII ACRYGT 2 cut(s) 275, 658
AgsI TTSAA 4 cut(s) 35, 470, 547, 724
AjiI CACGTC 1 cut(s) 708
AjnI CCWGG 1 cut(s) 95
AjuI GAANNNNNNNTTGG 4 cut(s) 333, 365, 544, 576
AluBI AGCT 3 cut(s) 373, 676, 784
AluI AGCT 3 cut(s) 373, 676, 784
Alw21I GWGCWC 2 cut(s) 375, 658
Alw26I GTCTC 1 cut(s) 797
AlwI GGATC 1 cut(s) 601
Aor13HI TCCGGA 1 cut(s) 507
AoxI GGCC 3 cut(s) 391, 536, 750
ApeKI GCWGC 3 cut(s) 4, 615, 676
ApoI RAATTY 1 cut(s) 542
AspLEI GCGC 2 cut(s) 102, 815
AsuHPI GGTGA 1 cut(s) 515
BalI TGGCCA 1 cut(s) 393
BanI GGYRCC 1 cut(s) 437
BanII GRGCYC 1 cut(s) 375
BbrPI CACGTG 1 cut(s) 661
Bbv12I GWGCWC 2 cut(s) 375, 658
BbvI GCAGC 3 cut(s) 16, 627, 663
BceAI ACGGC 1 cut(s) 765
BciT130I CCWGG 1 cut(s) 97
BciVI GTATCC 1 cut(s) 812
BcoDI GTCTC 1 cut(s) 797
BfaI CTAG 2 cut(s) 335, 800
BfmI CTRYAG 2 cut(s) 613, 639
BfuI GTATCC 1 cut(s) 812
BisI GCNGC 5 cut(s) 5, 436, 616, 669, 677
BlsI GCNGC 5 cut(s) 6, 437, 617, 670, 678
Bme1390I CCNGG 1 cut(s) 97
BmgBI CACGTC 1 cut(s) 708
BmiI GGNNCC 3 cut(s) 439, 512, 533
BmrFI CCNGG 1 cut(s) 97
BsaAI YACGTR 1 cut(s) 661
BsaHI GRCGYC 1 cut(s) 565
BsaWI WCCGGW 3 cut(s) 507, 528, 762
Bsc4I CCNNNNNNNGG 9 cut(s) 257, 258, 431, 452, 479, 507, 561, 725, 748
Bse118I RCCGGY 4 cut(s) 431, 452, 534, 582
Bse1I ACTGG 3 cut(s) 484, 753, 814
Bse3DI GCAATG 2 cut(s) 81, 320
BseAI TCCGGA 1 cut(s) 507
BseBI CCWGG 1 cut(s) 97
BseGI GGATG 2 cut(s) 246, 771
BseLI CCNNNNNNNGG 9 cut(s) 257, 258, 431, 452, 479, 507, 561, 725, 748
BseMI GCAATG 2 cut(s) 81, 320
BseMII CTCAG 1 cut(s) 165
BseNI ACTGG 3 cut(s) 484, 753, 814
BseXI GCAGC 3 cut(s) 16, 627, 663
BsgI GTGCAG 2 cut(s) 473, 662
BshFI GGCC 3 cut(s) 393, 538, 752
BshNI GGYRCC 1 cut(s) 437
BsiHKAI GWGCWC 2 cut(s) 375, 658
BsiSI CCGG 7 cut(s) 432, 453, 508, 529, 535, 583, 763
BslFI GGGAC 1 cut(s) 482
BslI CCNNNNNNNGG 9 cut(s) 257, 258, 431, 452, 479, 507, 561, 725, 748
BsmAI GTCTC 1 cut(s) 797
BsmFI GGGAC 1 cut(s) 482
BsnI GGCC 3 cut(s) 393, 538, 752
Bsp1286I GDGCHC 2 cut(s) 375, 658
Bsp13I TCCGGA 1 cut(s) 507
Bsp143I GATC 1 cut(s) 606
BspACI CCGC 2 cut(s) 435, 669
BspANI GGCC 3 cut(s) 393, 538, 752
BspCNI CTCAG 1 cut(s) 166
BspEI TCCGGA 1 cut(s) 507
BspLI GGNNCC 3 cut(s) 439, 512, 533
BspMAI CTGCAG 1 cut(s) 617
BspPI GGATC 1 cut(s) 601
BspT107I GGYRCC 1 cut(s) 437
BsrDI GCAATG 2 cut(s) 81, 320
BsrFI RCCGGY 4 cut(s) 431, 452, 534, 582
BsrI ACTGG 3 cut(s) 484, 753, 814
BssAI RCCGGY 4 cut(s) 431, 452, 534, 582
BssMI GATC 1 cut(s) 606
BssNI GRCGYC 1 cut(s) 565
Bst2UI CCWGG 1 cut(s) 97
Bst4CI ACNGT 4 cut(s) 50, 150, 650, 728
Bst6I CTCTTC 1 cut(s) 597
BstACI GRCGYC 1 cut(s) 565
BstAPI GCANNNNNTGC 1 cut(s) 139
BstBAI YACGTR 1 cut(s) 661
BstC8I GCNNGC 1 cut(s) 666
BstDEI CTNAG 1 cut(s) 174
BstF5I GGATG 2 cut(s) 246, 771
BstHHI GCGC 2 cut(s) 102, 815
BstKTI GATC 1 cut(s) 609
BstMAI GTCTC 1 cut(s) 797
BstMBI GATC 1 cut(s) 606
BstMWI GCNNNNNNNGC 3 cut(s) 139, 690, 710
BstNI CCWGG 1 cut(s) 97
BstNSI RCATGY 1 cut(s) 279
BstSCI CCNGG 1 cut(s) 95
BstSFI CTRYAG 2 cut(s) 613, 639
BstV1I GCAGC 3 cut(s) 16, 627, 663
BstX2I RGATCY 1 cut(s) 606
BstYI RGATCY 1 cut(s) 606
BsuI GTATCC 1 cut(s) 812
BsuRI GGCC 3 cut(s) 393, 538, 752
BtrI CACGTC 1 cut(s) 708
BtsCI GGATG 2 cut(s) 246, 771
BtsI GCAGTG 1 cut(s) 679
BtsIMutI CAGTG 2 cut(s) 477, 679
Cac8I GCNNGC 1 cut(s) 666
CfoI GCGC 2 cut(s) 102, 815
Cfr10I RCCGGY 4 cut(s) 431, 452, 534, 582
CseI GACGC 2 cut(s) 205, 554
Csp6I GTAC 1 cut(s) 244
CviAII CATG 4 cut(s) 276, 395, 419, 686
CviQI GTAC 1 cut(s) 244
DdeI CTNAG 1 cut(s) 174
DpnI GATC 1 cut(s) 608
DpnII GATC 1 cut(s) 606
EaeI YGGCCR 3 cut(s) 391, 536, 750
Eam1104I CTCTTC 1 cut(s) 597
EarI CTCTTC 1 cut(s) 597
Ecl136II GAGCTC 1 cut(s) 373
Eco24I GRGCYC 1 cut(s) 375
Eco53kI GAGCTC 1 cut(s) 373
Eco57I CTGAAG 1 cut(s) 54
Eco72I CACGTG 1 cut(s) 661
EcoICRI GAGCTC 1 cut(s) 373
EcoRII CCWGG 1 cut(s) 95
EcoT22I ATGCAT 1 cut(s) 320
EcoT38I GRGCYC 1 cut(s) 375
FaeI CATG 4 cut(s) 279, 398, 422, 689
FalI AAGNNNNNCTT 2 cut(s) 773, 805
FaqI GGGAC 1 cut(s) 482
FatI CATG 4 cut(s) 275, 394, 418, 685
FauNDI CATATG 1 cut(s) 25
Fnu4HI GCNGC 5 cut(s) 5, 436, 616, 669, 677
FokI GGATG 2 cut(s) 253, 778
FriOI GRGCYC 1 cut(s) 375
Fsp4HI GCNGC 5 cut(s) 5, 436, 616, 669, 677
FspBI CTAG 2 cut(s) 335, 800
GlaI GCGC 2 cut(s) 101, 814
GluI GCNGC 5 cut(s) 5, 436, 616, 669, 677
HaeIII GGCC 3 cut(s) 393, 538, 752
HapII CCGG 7 cut(s) 432, 453, 508, 529, 535, 583, 763
HgaI GACGC 2 cut(s) 205, 554
HhaI GCGC 2 cut(s) 102, 815
Hin1I GRCGYC 1 cut(s) 565
Hin1II CATG 4 cut(s) 279, 398, 422, 689
Hin6I GCGC 2 cut(s) 100, 813
HinP1I GCGC 2 cut(s) 100, 813
HincII GTYRAC 3 cut(s) 735, 747, 758
HindII GTYRAC 3 cut(s) 735, 747, 758
HinfI GANTC 3 cut(s) 35, 460, 698
HpaII CCGG 7 cut(s) 432, 453, 508, 529, 535, 583, 763
HphI GGTGA 1 cut(s) 515
Hpy166II GTNNAC 5 cut(s) 400, 569, 735, 747, 758
Hpy188I TCNGA 3 cut(s) 40, 90, 307
Hpy188III TCNNGA 3 cut(s) 216, 251, 508
Hpy8I GTNNAC 5 cut(s) 400, 569, 735, 747, 758
HpyAV CCTTC 2 cut(s) 178, 302
HpyCH4III ACNGT 4 cut(s) 50, 150, 650, 728
HpyCH4IV ACGT 2 cut(s) 660, 707
HpyF10VI GCNNNNNNNGC 3 cut(s) 139, 690, 710
HpyF3I CTNAG 1 cut(s) 174
HpySE526I ACGT 2 cut(s) 660, 707
Hsp92I GRCGYC 1 cut(s) 565
Hsp92II CATG 4 cut(s) 279, 398, 422, 689
HspAI GCGC 2 cut(s) 100, 813
Kpn2I TCCGGA 1 cut(s) 507
Kzo9I GATC 1 cut(s) 606
Lsp1109I GCAGC 3 cut(s) 16, 627, 663
MaeI CTAG 2 cut(s) 335, 800
MaeII ACGT 2 cut(s) 660, 707
MaeIII GTNAC 1 cut(s) 770
MalI GATC 1 cut(s) 608
MboI GATC 1 cut(s) 606
MboII GAAGA 1 cut(s) 614
MflI RGATCY 1 cut(s) 606
MhlI GDGCHC 2 cut(s) 375, 658
MlsI TGGCCA 1 cut(s) 393
MluCI AATT 4 cut(s) 156, 267, 387, 542
MluNI TGGCCA 1 cut(s) 393
MmeI TCCRAC 1 cut(s) 68
MnlI CCTC 5 cut(s) 169, 338, 503, 620, 749
Mox20I TGGCCA 1 cut(s) 393
Mph1103I ATGCAT 1 cut(s) 320
MroI TCCGGA 1 cut(s) 507
MscI TGGCCA 1 cut(s) 393
MseI TTAA 3 cut(s) 122, 201, 266
MslI CAYNNNNRTG 1 cut(s) 684
Msp20I TGGCCA 1 cut(s) 393
MspI CCGG 7 cut(s) 432, 453, 508, 529, 535, 583, 763
MspR9I CCNGG 1 cut(s) 97
MvaI CCWGG 1 cut(s) 97
MwoI GCNNNNNNNGC 3 cut(s) 139, 690, 710
NdeI CATATG 1 cut(s) 25
NdeII GATC 1 cut(s) 606
NlaIII CATG 4 cut(s) 279, 398, 422, 689
NlaIV GGNNCC 3 cut(s) 439, 512, 533
NsiI ATGCAT 1 cut(s) 320
NspI RCATGY 1 cut(s) 279
PciI ACATGT 1 cut(s) 275
PfeI GAWTC 3 cut(s) 35, 460, 698
PkrI GCNGC 5 cut(s) 6, 437, 617, 670, 678
PmaCI CACGTG 1 cut(s) 661
PmlI CACGTG 1 cut(s) 661
Ppu21I YACGTR 1 cut(s) 661
PscI ACATGT 1 cut(s) 275
Psp124BI GAGCTC 1 cut(s) 375
Psp6I CCWGG 1 cut(s) 95
PspCI CACGTG 1 cut(s) 661
PspGI CCWGG 1 cut(s) 95
PspN4I GGNNCC 3 cut(s) 439, 512, 533
PstI CTGCAG 1 cut(s) 617
PsuI RGATCY 1 cut(s) 606
RsaI GTAC 1 cut(s) 245
RsaNI GTAC 1 cut(s) 244
RseI CAYNNNNRTG 1 cut(s) 684
SacI GAGCTC 1 cut(s) 375
SaqAI TTAA 3 cut(s) 122, 201, 266
SatI GCNGC 5 cut(s) 5, 436, 616, 669, 677
Sau3AI GATC 1 cut(s) 606
ScrFI CCNGG 1 cut(s) 97
SduI GDGCHC 2 cut(s) 375, 658
SfcI CTRYAG 2 cut(s) 613, 639
SmiMI CAYNNNNRTG 1 cut(s) 684
Sse9I AATT 4 cut(s) 156, 267, 387, 542
SsiI CCGC 2 cut(s) 435, 669
SspI AATATT 1 cut(s) 297
SspMI CTAG 2 cut(s) 335, 800
SstI GAGCTC 1 cut(s) 375
StyD4I CCNGG 1 cut(s) 95
TaaI ACNGT 4 cut(s) 50, 150, 650, 728
TaiI ACGT 2 cut(s) 663, 710
TaqI TCGA 1 cut(s) 652
TasI AATT 4 cut(s) 156, 267, 387, 542
TatI WGTACW 1 cut(s) 243
TauI GCSGC 2 cut(s) 438, 671
TfiI GAWTC 3 cut(s) 35, 460, 698
Tru1I TTAA 3 cut(s) 122, 201, 266
Tru9I TTAA 3 cut(s) 122, 201, 266
TscAI CASTG 2 cut(s) 484, 686
TseI GCWGC 3 cut(s) 4, 615, 676
TspDTI ATGAA 1 cut(s) 435
TspRI CASTG 2 cut(s) 484, 686
XapI RAATTY 1 cut(s) 542
XceI RCATGY 1 cut(s) 279
XcmI CCANNNNNNNNNTGG 1 cut(s) 212
XspI CTAG 2 cut(s) 335, 800
Zsp2I ATGCAT 1 cut(s) 320
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.