Rh7AG226200

protein FAR1-RELATED SEQUENCE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0000143
Physical Location & Seq
Forward (+)
21260632 .. 21261231
600 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG226200.1

Sequence Viewer

Length: 600 bp
ATGCATTGTCAAATTGAGAACAGTTGTCAAGAAATTTACAATGATGGATTATATGAACGGTTAGAGTACAATGATGGATTATTGAAGGAACTCGGTGGGGCTATTTCCATTCTTGCAGTATACATGATTAGCCTTCAGATCGATAAGATAGATGATGGCGATGAGATAGATGATGAGATAGATGATGACCATAATGAGTGTGGTTGTCTTATAAAACGTACCCATGGCTTACCATGTGCACATGAAATTGCCAACTACGAGAGAGAAGGTCGACCTATTCCACTTGAATGCATCAATCCTCATTGGAGGATACCTTCCCGCTTGAACTCTTTGAGAAAGACCGGAGAGCCCAATGTGCATGAGACGCTGAAACGACCTAGGTTGAATGAGGAGATGAATACAAATTCACCGAATGCTGGTCCATCTATCGTGCCCTTAACACTAGAGGGGCAGCCTGCAGGGGATGAGGTATATTTTATATTTATACACACACACACACAGTCCTACTATAGTGCGGACATTACGGATTTCCCGTTTTCCCCCACTTTCCGATCACATTTTCACATCTTAACCGTTCAGTTTTTAAGTCCTAATGTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE

Protein Analysis

199

Amino Acids

22.69

Weight (kDa)

4.81

Isoelectric Point (pI)

54.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000143)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G76710 AT1G76710 AT1G76710 AT1G76710
fragaria_vesca FvH4_1g20063 FvH4_2g15231 FvH4_3g04011 FvH4_3g28681 FvH4_4g01411 FvH4_4g10181 FvH4_4g15922 FvH4_4g16651 FvH4_4g16652 FvH4_5g13892 FvH4_5g13893 FvH4_5g20623 FvH4_5g20623 FvH4_5g20623 FvH4_5g20623 FvH4_5g25511 FvH4_6g12551 FvH4_6g12552 FvH4_6g38841 FvH4_7g04391
malus_domestica MD05G1031300.v1.1 MD05G1031400.v1.1 MD05G1031500.v1.1 MD08G1164400.v1.1 MD10G1032900.v1.1 MD10G1033000.v1.1 MD10G1033100.v1.1
prunus_persica Prupe.3G240700_v2.0.a1 Prupe.7G144600_v2.0.a1 Prupe.8G038500_v2.0.a1 Prupe.8G038500_v2.0.a1
pyrus_communis pycom05g02250 pycom05g02260 pycom05g02270 pycom05g02280 pycom08g14160 pycom10g02100 pycom10g02110 pycom10g02130
rosa_chinensis RchiOBHm_Chr1g0329481 RchiOBHm_Chr1g0329491 RchiOBHm_Chr1g0341531 RchiOBHm_Chr3g0464811 RchiOBHm_Chr3g0494701 RchiOBHm_Chr3g0497501 RchiOBHm_Chr4g0385841 RchiOBHm_Chr5g0061181 RchiOBHm_Chr6g0263001 RchiOBHm_Chr7g0193111 RchiOBHm_Chr7g0206281 RchiOBHm_Chr7g0206311
rosa_laevigata RLG00000018908 RLG00000028528 RLG00000028803 RLG00000029882 RLG00000029883 RLG00000030361
rosa_multiflora Rmu_co8196328.1_g000001 Rmu_co8259135.1_g000001 Rmu_co8269185.1_g000001 Rmu_sc0000076.1_g000019 Rmu_sc0000311.1_g000007 Rmu_sc0000429.1_g000038 Rmu_sc0000429.1_g000039 Rmu_sc0000429.1_g000040 Rmu_sc0000511.1_g000005 Rmu_sc0000539.1_g000054 Rmu_sc0000566.1_g000039 Rmu_sc0000805.1_g000032 Rmu_sc0000870.1_g000073 Rmu_sc0000870.1_g000074 Rmu_sc0001010.1_g000018 Rmu_sc0001083.1_g000013 Rmu_sc0001114.1_g000011 Rmu_sc0001702.1_g000027 Rmu_sc0001779.1_g000012 Rmu_sc0002923.1_g000036 Rmu_sc0003242.1_g000011 Rmu_sc0003291.1_g000036 Rmu_sc0003393.1_g000012 Rmu_sc0003872.1_g000016 Rmu_sc0003872.1_g000017 Rmu_sc0003872.1_g000018 Rmu_sc0004084.1_g000020 Rmu_sc0004386.1_g000005 Rmu_sc0004622.1_g000005 Rmu_sc0004742.1_g000021 Rmu_sc0004755.1_g000020 Rmu_sc0004805.1_g000036 Rmu_sc0005065.1_g000006 Rmu_sc0005177.1_g000004 Rmu_sc0006373.1_g000003 Rmu_sc0006373.1_g000004 Rmu_sc0007121.1_g000002 Rmu_sc0007943.1_g000003 Rmu_sc0010368.1_g000006 Rmu_sc0010543.1_g000001 Rmu_sc0012591.1_g000006 Rmu_sc0013504.1_g000009 Rmu_sc0015025.1_g000001 Rmu_sc0016170.1_g000001 Rmu_sc0017156.1_g000001 Rmu_sc0026439.1_g000001
rosa_roxburghii Rroxscaffold_175G00432280 Rroxscaffold_1G00030190 Rroxscaffold_1G00030880 Rroxscaffold_2G00090520 Rroxscaffold_3G00227940 Rroxscaffold_3G00233400 Rroxscaffold_3G00238500 Rroxscaffold_3G00251650 Rroxscaffold_4G00301570 Rroxscaffold_4G00321040 Rroxscaffold_5G00350880 Rroxscaffold_7G00184400
rosa_rugosa Rorug01G0080800 Rorug01G0080900 Rorug01G0193900 Rorug02G0275900 Rorug02G0275900 Rorug02G0275900 Rorug02G0305400 Rorug02G0311800 Rorug02G0350400 Rorug02G0381300 Rorug03G0136700 Rorug03G0181900 Rorug03G0268000 Rorug04G0301600 Rorug05G0175100 Rorug05G0250700 Rorug05G0298200 Rorug05G0596000 Rorug06G0029500 Rorug07G0094300 Rorug07G0094300 Rorug07G0095400 Rorug07G0140100
rosa_samantha Rh1AG099200 Rh1AG190500 Rh1BG078900 Rh1BG079000 Rh1BG079100 Rh1CG084600 Rh1CG084700 Rh1CG095300 Rh1CG175900 Rh1DG103300 Rh1DG150400 Rh2AG079300 Rh2AG272400 Rh2AG464800 Rh2AG507400 Rh2DG078300 Rh2DG078400 Rh3CG206900 Rh3CG295400 Rh3DG206800 Rh3DG356200 Rh4CG071500 Rh4CG179200 Rh4DG064700 Rh5CG362400 Rh7AG212300 Rh7AG226200 Rh7BG222200
rosa_wichuraiana Rw0G009990 Rw0G011260 Rw0G011270 Rw0G012910 Rw0G013740 Rw1G007740 Rw1G013050 Rw1G014230 Rw2G014270 Rw3G012720 Rw3G028110 Rw4G006630 Rw4G015270 Rw4G016160 Rw4G031380 Rw5G011440 Rw5G029180 Rw5G048360 Rw5G048430 Rw5G048780 Rw6G005250 Rw6G006390 Rw7G002840 Rw7G014080 Rw7G019650 Rw7G032790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 212
AccI GTMKAC 2 cut(s) 120, 271
AciI CCGC 2 cut(s) 319, 515
AcsI RAATTY 2 cut(s) 33, 403
AcuI CTGAAG 1 cut(s) 119
AfaI GTAC 2 cut(s) 68, 220
AfiI CCNNNNNNNGG 1 cut(s) 416
AgsI TTSAA 4 cut(s) 85, 287, 325, 385
Alw21I GWGCWC 1 cut(s) 241
Alw26I GTCTC 1 cut(s) 356
Alw44I GTGCAC 1 cut(s) 237
ApaLI GTGCAC 1 cut(s) 237
ApeKI GCWGC 1 cut(s) 451
ApoI RAATTY 2 cut(s) 33, 403
AspA2I CCTAGG 1 cut(s) 377
AspS9I GGNCC 1 cut(s) 419
AsuHPI GGTGA 1 cut(s) 399
AvaII GGWCC 1 cut(s) 419
AvrII CCTAGG 1 cut(s) 377
BaeGI GKGCMC 2 cut(s) 241, 435
BanII GRGCYC 1 cut(s) 351
Bbv12I GWGCWC 1 cut(s) 241
BbvI GCAGC 1 cut(s) 463
BccI CCATC 4 cut(s) 38, 68, 149, 430
BciVI GTATCC 1 cut(s) 303
BcoDI GTCTC 1 cut(s) 356
BfaI CTAG 2 cut(s) 378, 443
BfmI CTRYAG 2 cut(s) 456, 508
BfuI GTATCC 1 cut(s) 303
BisI GCNGC 1 cut(s) 452
BlnI CCTAGG 1 cut(s) 377
BlsI GCNGC 1 cut(s) 453
Bme18I GGWCC 1 cut(s) 419
BmgT120I GGNCC 1 cut(s) 419
BmsI GCATC 1 cut(s) 300
Bsa29I ATCGAT 1 cut(s) 141
BsaJI CCNNGG 2 cut(s) 223, 377
BsaWI WCCGGW 1 cut(s) 341
Bsc4I CCNNNNNNNGG 1 cut(s) 416
BseCI ATCGAT 1 cut(s) 141
BseDI CCNNGG 2 cut(s) 223, 377
BseGI GGATG 1 cut(s) 469
BseLI CCNNNNNNNGG 1 cut(s) 416
BseRI GAGGAG 1 cut(s) 404
BseSI GKGCMC 2 cut(s) 241, 435
BseXI GCAGC 1 cut(s) 463
BshVI ATCGAT 1 cut(s) 141
BsiHKAI GWGCWC 1 cut(s) 241
BsiSI CCGG 1 cut(s) 342
BslI CCNNNNNNNGG 1 cut(s) 416
BsmAI GTCTC 1 cut(s) 356
BsmBI CGTCTC 1 cut(s) 356
BsmI GAATGC 2 cut(s) 293, 418
Bsp1286I GDGCHC 3 cut(s) 241, 351, 435
Bsp143I GATC 2 cut(s) 138, 551
Bsp19I CCATGG 1 cut(s) 223
BspACI CCGC 2 cut(s) 319, 515
BspDI ATCGAT 1 cut(s) 141
BspMAI CTGCAG 1 cut(s) 460
BssECI CCNNGG 2 cut(s) 223, 377
BssMI GATC 2 cut(s) 138, 551
BssNAI GTATAC 1 cut(s) 121
BssT1I CCWWGG 2 cut(s) 223, 377
Bst1107I GTATAC 1 cut(s) 121
Bst4CI ACNGT 4 cut(s) 23, 60, 501, 574
BstC8I GCNNGC 1 cut(s) 456
BstDSI CCRYGG 1 cut(s) 223
BstF5I GGATG 1 cut(s) 469
BstKTI GATC 2 cut(s) 141, 554
BstMAI GTCTC 1 cut(s) 356
BstMBI GATC 2 cut(s) 138, 551
BstMWI GCNNNNNNNGC 2 cut(s) 355, 364
BstSFI CTRYAG 2 cut(s) 456, 508
BstSLI GKGCMC 2 cut(s) 241, 435
BstV1I GCAGC 1 cut(s) 463
BstZ17I GTATAC 1 cut(s) 121
Bsu15I ATCGAT 1 cut(s) 141
BsuI GTATCC 1 cut(s) 303
BsuTUI ATCGAT 1 cut(s) 141
BtgI CCRYGG 1 cut(s) 223
BtgZI GCGATG 1 cut(s) 174
BtsCI GGATG 1 cut(s) 469
Cac8I GCNNGC 1 cut(s) 456
Cfr13I GGNCC 1 cut(s) 419
ClaI ATCGAT 1 cut(s) 141
CseI GACGC 1 cut(s) 373
Csp6I GTAC 2 cut(s) 67, 219
CviAII CATG 5 cut(s) 124, 224, 234, 242, 359
CviJI RGCY 5 cut(s) 101, 132, 228, 349, 454
CviKI_1 RGCY 5 cut(s) 101, 132, 228, 349, 454
CviQI GTAC 2 cut(s) 67, 219
DpnI GATC 2 cut(s) 140, 553
DpnII GATC 2 cut(s) 138, 551
Eco130I CCWWGG 2 cut(s) 223, 377
Eco24I GRGCYC 1 cut(s) 351
Eco47I GGWCC 1 cut(s) 419
Eco57I CTGAAG 1 cut(s) 119
EcoT14I CCWWGG 2 cut(s) 223, 377
EcoT22I ATGCAT 2 cut(s) 6, 293
EcoT38I GRGCYC 1 cut(s) 351
ErhI CCWWGG 2 cut(s) 223, 377
Esp3I CGTCTC 1 cut(s) 356
FaeI CATG 5 cut(s) 127, 227, 237, 245, 362
FatI CATG 5 cut(s) 123, 223, 233, 241, 358
FauI CCCGC 1 cut(s) 326
FblI GTMKAC 2 cut(s) 120, 271
Fnu4HI GCNGC 1 cut(s) 452
FokI GGATG 1 cut(s) 476
FriOI GRGCYC 1 cut(s) 351
Fsp4HI GCNGC 1 cut(s) 452
FspBI CTAG 2 cut(s) 378, 443
GluI GCNGC 1 cut(s) 452
HapII CCGG 1 cut(s) 342
HgaI GACGC 1 cut(s) 373
Hin1II CATG 5 cut(s) 127, 227, 237, 245, 362
HincII GTYRAC 1 cut(s) 272
HindII GTYRAC 1 cut(s) 272
HpaII CCGG 1 cut(s) 342
HphI GGTGA 1 cut(s) 399
Hpy166II GTNNAC 3 cut(s) 121, 239, 272
Hpy188I TCNGA 2 cut(s) 138, 551
Hpy188III TCNNGA 1 cut(s) 29
Hpy8I GTNNAC 3 cut(s) 121, 239, 272
HpyAV CCTTC 4 cut(s) 79, 143, 260, 324
HpyCH4III ACNGT 4 cut(s) 23, 60, 501, 574
HpyCH4IV ACGT 1 cut(s) 217
HpyCH4V TGCA 6 cut(s) 4, 116, 239, 291, 358, 458
HpyF10VI GCNNNNNNNGC 2 cut(s) 355, 364
HpySE526I ACGT 1 cut(s) 217
Hsp92II CATG 5 cut(s) 127, 227, 237, 245, 362
Kzo9I GATC 2 cut(s) 138, 551
LpnPI CCDG 4 cut(s) 355, 402, 444, 468
Lsp1109I GCAGC 1 cut(s) 463
LweI GCATC 1 cut(s) 300
MaeI CTAG 2 cut(s) 378, 443
MaeII ACGT 1 cut(s) 217
MalI GATC 2 cut(s) 140, 553
MboI GATC 2 cut(s) 138, 551
MhlI GDGCHC 3 cut(s) 241, 351, 435
MluCI AATT 4 cut(s) 12, 33, 246, 403
MnlI CCTC 5 cut(s) 300, 309, 382, 439, 460
Mph1103I ATGCAT 2 cut(s) 6, 293
MseI TTAA 3 cut(s) 437, 569, 584
MslI CAYNNNNRTG 1 cut(s) 286
MspI CCGG 1 cut(s) 342
Mva1269I GAATGC 2 cut(s) 293, 418
MwoI GCNNNNNNNGC 2 cut(s) 355, 364
NcoI CCATGG 1 cut(s) 223
NdeII GATC 2 cut(s) 138, 551
NlaIII CATG 5 cut(s) 127, 227, 237, 245, 362
NsiI ATGCAT 2 cut(s) 6, 293
PcsI WCGNNNNNNNCGW 1 cut(s) 530
PctI GAATGC 2 cut(s) 293, 418
PkrI GCNGC 1 cut(s) 453
PsiI TTATAA 1 cut(s) 212
PspPI GGNCC 1 cut(s) 419
PstI CTGCAG 1 cut(s) 460
RsaI GTAC 2 cut(s) 68, 220
RsaNI GTAC 2 cut(s) 67, 219
RseI CAYNNNNRTG 1 cut(s) 286
SalI GTCGAC 1 cut(s) 270
SaqAI TTAA 3 cut(s) 437, 569, 584
SatI GCNGC 1 cut(s) 452
Sau3AI GATC 2 cut(s) 138, 551
Sau96I GGNCC 1 cut(s) 419
SbfI CCTGCAGG 1 cut(s) 460
SdaI CCTGCAGG 1 cut(s) 460
SduI GDGCHC 3 cut(s) 241, 351, 435
SetI ASST 7 cut(s) 220, 271, 277, 316, 379, 383, 471
SfaNI GCATC 1 cut(s) 300
SfcI CTRYAG 2 cut(s) 456, 508
SinI GGWCC 1 cut(s) 419
SmiMI CAYNNNNRTG 1 cut(s) 286
Sse8387I CCTGCAGG 1 cut(s) 460
Sse9I AATT 4 cut(s) 12, 33, 246, 403
SsiI CCGC 2 cut(s) 319, 515
SspMI CTAG 2 cut(s) 378, 443
StyI CCWWGG 2 cut(s) 223, 377
TaaI ACNGT 4 cut(s) 23, 60, 501, 574
TaiI ACGT 1 cut(s) 220
TaqI TCGA 2 cut(s) 141, 271
TasI AATT 4 cut(s) 12, 33, 246, 403
TatI WGTACW 1 cut(s) 66
Tru1I TTAA 3 cut(s) 437, 569, 584
Tru9I TTAA 3 cut(s) 437, 569, 584
TseI GCWGC 1 cut(s) 451
TspDTI ATGAA 3 cut(s) 69, 258, 410
TspGWI ACGGA 1 cut(s) 539
VneI GTGCAC 1 cut(s) 237
VpaK11BI GGWCC 1 cut(s) 419
XapI RAATTY 2 cut(s) 33, 403
XcmI CCANNNNNNNNNTGG 1 cut(s) 197
XmaJI CCTAGG 1 cut(s) 377
XmiI GTMKAC 2 cut(s) 120, 271
XspI CTAG 2 cut(s) 378, 443
Zsp2I ATGCAT 2 cut(s) 6, 293
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.