Rmu_sc0000805.1_g000032

protein FAR1-RELATED SEQUENCE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000805.1
OG0000143
Physical Location & Seq
Reverse (-)
79317 .. 83382
4066 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000805.1_g000032.1.cds

Sequence Viewer

Length: 1083 bp
atggttgacaaaagtacccaaaaatctgaagtagatagtaacaaggctgatgaacaacaacgcccgaggctgacttctacaaagaaatgtgaatgtccattcttattaaaagcctttaatattggtagggatgagtgggtacttgaggttgcttgcggaatccacaatcatgttgccccatcatatctagaaggtcattcctatgcagggcgactatctaaagaagaacatgagttgttggtggatatgtctaagcgtttaatgagacccaaggatatattgacttccataaagagccgagatccaagtaatacatcaacgatgagaactatatacaatgctaggtattttgctcggattatcgctagagcaggcagaactcaaatgcaacaattactaaagaatttgcgcgatcatcattatattgagcatcatagaagcgaagatcacgtggtcactgatttgttttggtgtcatccattcagtcttcaaatgctacgtacattcccacatgttcttataatggattgcacctataagaaaaacaggtatcgttttccactttttgagattgtgggtattacatgcactgagcaaactttcaacgttgcgtttgtttacatgtcaaaggaggcagaagataattacagatgggcactgagtaggttaagaacacttatggatgaggattctatgcctggggtaattgtcactgatcgagaattagcacttatgaaagccactgaaaatgtctttcccgatactcatcagattttatgtaagtggcacattgggcacccaaaggccactgaagctgggagggaagatgccaccacacaccgtcgccatcaccgtcatggtccctgcaaactcaacaagtcttgcaccctaaagtgtcgccagtaccacactccaaatccaagcaccggcaagtacaccatccaagagtatgaatatatttcaaagtatcgcaagcctgtttcgacccccacaaatattgttgagcaaaagtgccctatgcaaaccgcatccataaagcctaattcaaactacatcccacatagagggagatttctatcatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AFT FAR1 MULE

Protein Analysis

360

Amino Acids

42.09

Weight (kDa)

9.24

Isoelectric Point (pI)

47.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000143)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G76710 AT1G76710 AT1G76710 AT1G76710
fragaria_vesca FvH4_1g20063 FvH4_2g15231 FvH4_3g04011 FvH4_3g28681 FvH4_4g01411 FvH4_4g10181 FvH4_4g15922 FvH4_4g16651 FvH4_4g16652 FvH4_5g13892 FvH4_5g13893 FvH4_5g20623 FvH4_5g20623 FvH4_5g20623 FvH4_5g20623 FvH4_5g25511 FvH4_6g12551 FvH4_6g12552 FvH4_6g38841 FvH4_7g04391
malus_domestica MD05G1031300.v1.1 MD05G1031400.v1.1 MD05G1031500.v1.1 MD08G1164400.v1.1 MD10G1032900.v1.1 MD10G1033000.v1.1 MD10G1033100.v1.1
prunus_persica Prupe.3G240700_v2.0.a1 Prupe.7G144600_v2.0.a1 Prupe.8G038500_v2.0.a1 Prupe.8G038500_v2.0.a1
pyrus_communis pycom05g02250 pycom05g02260 pycom05g02270 pycom05g02280 pycom08g14160 pycom10g02100 pycom10g02110 pycom10g02130
rosa_chinensis RchiOBHm_Chr1g0329481 RchiOBHm_Chr1g0329491 RchiOBHm_Chr1g0341531 RchiOBHm_Chr3g0464811 RchiOBHm_Chr3g0494701 RchiOBHm_Chr3g0497501 RchiOBHm_Chr4g0385841 RchiOBHm_Chr5g0061181 RchiOBHm_Chr6g0263001 RchiOBHm_Chr7g0193111 RchiOBHm_Chr7g0206281 RchiOBHm_Chr7g0206311
rosa_laevigata RLG00000018908 RLG00000028528 RLG00000028803 RLG00000029882 RLG00000029883 RLG00000030361
rosa_multiflora Rmu_co8196328.1_g000001 Rmu_co8259135.1_g000001 Rmu_co8269185.1_g000001 Rmu_sc0000076.1_g000019 Rmu_sc0000311.1_g000007 Rmu_sc0000429.1_g000038 Rmu_sc0000429.1_g000039 Rmu_sc0000429.1_g000040 Rmu_sc0000511.1_g000005 Rmu_sc0000539.1_g000054 Rmu_sc0000566.1_g000039 Rmu_sc0000805.1_g000032 Rmu_sc0000870.1_g000073 Rmu_sc0000870.1_g000074 Rmu_sc0001010.1_g000018 Rmu_sc0001083.1_g000013 Rmu_sc0001114.1_g000011 Rmu_sc0001702.1_g000027 Rmu_sc0001779.1_g000012 Rmu_sc0002923.1_g000036 Rmu_sc0003242.1_g000011 Rmu_sc0003291.1_g000036 Rmu_sc0003393.1_g000012 Rmu_sc0003872.1_g000016 Rmu_sc0003872.1_g000017 Rmu_sc0003872.1_g000018 Rmu_sc0004084.1_g000020 Rmu_sc0004386.1_g000005 Rmu_sc0004622.1_g000005 Rmu_sc0004742.1_g000021 Rmu_sc0004755.1_g000020 Rmu_sc0004805.1_g000036 Rmu_sc0005065.1_g000006 Rmu_sc0005177.1_g000004 Rmu_sc0006373.1_g000003 Rmu_sc0006373.1_g000004 Rmu_sc0007121.1_g000002 Rmu_sc0007943.1_g000003 Rmu_sc0010368.1_g000006 Rmu_sc0010543.1_g000001 Rmu_sc0012591.1_g000006 Rmu_sc0013504.1_g000009 Rmu_sc0015025.1_g000001 Rmu_sc0016170.1_g000001 Rmu_sc0017156.1_g000001 Rmu_sc0026439.1_g000001
rosa_roxburghii Rroxscaffold_175G00432280 Rroxscaffold_1G00030190 Rroxscaffold_1G00030880 Rroxscaffold_2G00090520 Rroxscaffold_3G00227940 Rroxscaffold_3G00233400 Rroxscaffold_3G00238500 Rroxscaffold_3G00251650 Rroxscaffold_4G00301570 Rroxscaffold_4G00321040 Rroxscaffold_5G00350880 Rroxscaffold_7G00184400
rosa_rugosa Rorug01G0080800 Rorug01G0080900 Rorug01G0193900 Rorug02G0275900 Rorug02G0275900 Rorug02G0275900 Rorug02G0305400 Rorug02G0311800 Rorug02G0350400 Rorug02G0381300 Rorug03G0136700 Rorug03G0181900 Rorug03G0268000 Rorug04G0301600 Rorug05G0175100 Rorug05G0250700 Rorug05G0298200 Rorug05G0596000 Rorug06G0029500 Rorug07G0094300 Rorug07G0094300 Rorug07G0095400 Rorug07G0140100
rosa_samantha Rh1AG099200 Rh1AG190500 Rh1BG078900 Rh1BG079000 Rh1BG079100 Rh1CG084600 Rh1CG084700 Rh1CG095300 Rh1CG175900 Rh1DG103300 Rh1DG150400 Rh2AG079300 Rh2AG272400 Rh2AG464800 Rh2AG507400 Rh2DG078300 Rh2DG078400 Rh3CG206900 Rh3CG295400 Rh3DG206800 Rh3DG356200 Rh4CG071500 Rh4CG179200 Rh4DG064700 Rh5CG362400 Rh7AG212300 Rh7AG226200 Rh7BG222200
rosa_wichuraiana Rw0G009990 Rw0G011260 Rw0G011270 Rw0G012910 Rw0G013740 Rw1G007740 Rw1G013050 Rw1G014230 Rw2G014270 Rw3G012720 Rw3G028110 Rw4G006630 Rw4G015270 Rw4G016160 Rw4G031380 Rw5G011440 Rw5G029180 Rw5G048360 Rw5G048430 Rw5G048780 Rw6G005250 Rw6G006390 Rw7G002840 Rw7G014080 Rw7G019650 Rw7G032790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 521
AccB1I GGYRCC 1 cut(s) 795
AccII CGCG 1 cut(s) 411
AciI CCGC 2 cut(s) 156, 1026
AclI AACGTT 1 cut(s) 606
AclWI GGATC 1 cut(s) 296
AcsI RAATTY 1 cut(s) 403
AcuI CTGAAG 2 cut(s) 48, 831
AcvI CACGTG 1 cut(s) 451
AfaI GTAC 5 cut(s) 16, 141, 502, 905, 935
AfiI CCNNNNNNNGG 3 cut(s) 207, 926, 1064
AflIII ACRYGT 2 cut(s) 511, 621
AgsI TTSAA 4 cut(s) 491, 604, 963, 1047
AjnI CCWGG 1 cut(s) 697
AluBI AGCT 1 cut(s) 815
AluI AGCT 1 cut(s) 815
Alw26I GTCTC 1 cut(s) 259
AlwI GGATC 1 cut(s) 296
Ama87I CYCGRG 1 cut(s) 64
AoxI GGCC 1 cut(s) 804
ApoI RAATTY 1 cut(s) 403
AspLEI GCGC 1 cut(s) 411
AspS9I GGNCC 1 cut(s) 860
AsuHPI GGTGA 1 cut(s) 842
AvaI CYCGRG 1 cut(s) 64
AvaII GGWCC 1 cut(s) 860
BaeGI GKGCMC 3 cut(s) 658, 798, 1016
BaeI ACNNNNGTAYC 1 cut(s) 31
BanI GGYRCC 1 cut(s) 795
BbrPI CACGTG 1 cut(s) 451
BbsI GAAGAC 1 cut(s) 479
BccI CCATC 4 cut(s) 187, 645, 855, 947
BciT130I CCWGG 1 cut(s) 699
BcoDI GTCTC 1 cut(s) 259
BfaI CTAG 3 cut(s) 188, 342, 366
Bme1390I CCNGG 1 cut(s) 699
Bme18I GGWCC 1 cut(s) 860
BmeT110I CYCGRG 1 cut(s) 64
BmgT120I GGNCC 1 cut(s) 860
BmiI GGNNCC 2 cut(s) 797, 862
BmrFI CCNGG 1 cut(s) 699
BmsI GCATC 3 cut(s) 439, 817, 1037
BpiI GAAGAC 1 cut(s) 479
BpuEI CTTGAG 1 cut(s) 164
BsaAI YACGTR 2 cut(s) 451, 500
BsaBI GATNNNNATC 2 cut(s) 765, 1075
BsaI GGTCTC 1 cut(s) 259
BsaJI CCNNGG 3 cut(s) 65, 270, 698
Bsc4I CCNNNNNNNGG 3 cut(s) 207, 926, 1064
Bse118I RCCGGY 1 cut(s) 926
Bse1I ACTGG 1 cut(s) 901
Bse8I GATNNNNATC 2 cut(s) 765, 1075
BseBI CCWGG 1 cut(s) 699
BseDI CCNNGG 3 cut(s) 65, 270, 698
BseGI GGATG 6 cut(s) 136, 475, 688, 939, 1028, 1053
BseJI GATNNNNATC 2 cut(s) 765, 1075
BseLI CCNNNNNNNGG 3 cut(s) 207, 926, 1064
BseMII CTCAG 2 cut(s) 582, 650
BseNI ACTGG 1 cut(s) 901
BseSI GKGCMC 3 cut(s) 658, 798, 1016
BseYI CCCAGC 1 cut(s) 815
Bsh1236I CGCG 1 cut(s) 411
BshFI GGCC 1 cut(s) 806
BshNI GGYRCC 1 cut(s) 795
BsiHKCI CYCGRG 1 cut(s) 64
BsiSI CCGG 1 cut(s) 927
BslFI GGGAC 1 cut(s) 846
BslI CCNNNNNNNGG 3 cut(s) 207, 926, 1064
BsmAI GTCTC 1 cut(s) 259
BsmFI GGGAC 1 cut(s) 846
BsnI GGCC 1 cut(s) 806
Bso31I GGTCTC 1 cut(s) 259
BsoBI CYCGRG 1 cut(s) 64
Bsp1286I GDGCHC 3 cut(s) 658, 798, 1016
Bsp143I GATC 4 cut(s) 301, 412, 445, 715
BspACI CCGC 2 cut(s) 156, 1026
BspANI GGCC 1 cut(s) 806
BspCNI CTCAG 2 cut(s) 583, 651
BspFNI CGCG 1 cut(s) 411
BspLI GGNNCC 2 cut(s) 797, 862
BspPI GGATC 1 cut(s) 296
BspT107I GGYRCC 1 cut(s) 795
BspTNI GGTCTC 1 cut(s) 259
BsrFI RCCGGY 1 cut(s) 926
BsrI ACTGG 1 cut(s) 901
BssAI RCCGGY 1 cut(s) 926
BssECI CCNNGG 3 cut(s) 65, 270, 698
BssMI GATC 4 cut(s) 301, 412, 445, 715
BssT1I CCWWGG 1 cut(s) 270
Bst2UI CCWGG 1 cut(s) 699
Bst4CI ACNGT 2 cut(s) 842, 854
BstBAI YACGTR 2 cut(s) 451, 500
BstC8I GCNNGC 3 cut(s) 154, 373, 974
BstDEI CTNAG 3 cut(s) 252, 591, 659
BstF5I GGATG 6 cut(s) 136, 475, 688, 939, 1028, 1053
BstFNI CGCG 1 cut(s) 411
BstHHI GCGC 1 cut(s) 411
BstKTI GATC 4 cut(s) 304, 415, 448, 718
BstMAI GTCTC 1 cut(s) 259
BstMBI GATC 4 cut(s) 301, 412, 445, 715
BstMWI GCNNNNNNNGC 2 cut(s) 793, 812
BstNI CCWGG 1 cut(s) 699
BstNSI RCATGY 3 cut(s) 515, 588, 625
BstSCI CCNGG 1 cut(s) 697
BstSLI GKGCMC 3 cut(s) 658, 798, 1016
BstSNI TACGTA 1 cut(s) 500
BstUI CGCG 1 cut(s) 411
BstV2I GAAGAC 1 cut(s) 479
BstX2I RGATCY 1 cut(s) 301
BstYI RGATCY 1 cut(s) 301
BsuRI GGCC 1 cut(s) 806
BtsCI GGATG 6 cut(s) 136, 475, 688, 939, 1028, 1053
BtsIMutI CAGTG 6 cut(s) 456, 588, 656, 711, 741, 807
Cac8I GCNNGC 3 cut(s) 154, 373, 974
CfoI GCGC 1 cut(s) 411
Cfr10I RCCGGY 1 cut(s) 926
Cfr13I GGNCC 1 cut(s) 860
Csp6I GTAC 5 cut(s) 15, 140, 501, 904, 934
CspCI CAANNNNNGTGG 2 cut(s) 979, 1014
CviAII CATG 6 cut(s) 170, 230, 512, 585, 622, 857
CviJI RGCY 9 cut(s) 47, 70, 113, 297, 740, 806, 815, 976, 1039
CviKI_1 RGCY 9 cut(s) 47, 70, 113, 297, 740, 806, 815, 976, 1039
CviQI GTAC 5 cut(s) 15, 140, 501, 904, 934
DdeI CTNAG 3 cut(s) 252, 591, 659
DpnI GATC 4 cut(s) 303, 414, 447, 717
DpnII GATC 4 cut(s) 301, 412, 445, 715
Eco105I TACGTA 1 cut(s) 500
Eco130I CCWWGG 1 cut(s) 270
Eco31I GGTCTC 1 cut(s) 259
Eco47I GGWCC 1 cut(s) 860
Eco57I CTGAAG 2 cut(s) 48, 831
Eco72I CACGTG 1 cut(s) 451
Eco88I CYCGRG 1 cut(s) 64
EcoRII CCWGG 1 cut(s) 697
EcoT14I CCWWGG 1 cut(s) 270
ErhI CCWWGG 1 cut(s) 270
FaeI CATG 6 cut(s) 173, 233, 515, 588, 625, 860
FaqI GGGAC 1 cut(s) 846
FatI CATG 6 cut(s) 169, 229, 511, 584, 621, 856
FokI GGATG 6 cut(s) 143, 462, 695, 926, 1015, 1040
FspBI CTAG 3 cut(s) 188, 342, 366
GlaI GCGC 1 cut(s) 410
GsaI CCCAGC 1 cut(s) 819
HaeIII GGCC 1 cut(s) 806
HapII CCGG 1 cut(s) 927
HhaI GCGC 1 cut(s) 411
Hin1II CATG 6 cut(s) 173, 233, 515, 588, 625, 860
Hin6I GCGC 1 cut(s) 409
HinP1I GCGC 1 cut(s) 409
HincII GTYRAC 1 cut(s) 7
HindII GTYRAC 1 cut(s) 7
HinfI GANTC 2 cut(s) 159, 689
HpaII CCGG 1 cut(s) 927
HphI GGTGA 1 cut(s) 842
Hpy166II GTNNAC 3 cut(s) 7, 619, 936
Hpy188I TCNGA 3 cut(s) 28, 357, 771
Hpy188III TCNNGA 3 cut(s) 188, 719, 758
Hpy8I GTNNAC 3 cut(s) 7, 619, 936
Hpy99I CGWCG 1 cut(s) 846
HpyAV CCTTC 1 cut(s) 185
HpyCH4III ACNGT 2 cut(s) 842, 854
HpyCH4IV ACGT 3 cut(s) 450, 499, 606
HpyCH4V TGCA 7 cut(s) 206, 388, 531, 588, 867, 885, 1021
HpyF10VI GCNNNNNNNGC 2 cut(s) 793, 812
HpyF3I CTNAG 3 cut(s) 252, 591, 659
HpySE526I ACGT 3 cut(s) 450, 499, 606
Hsp92II CATG 6 cut(s) 173, 233, 515, 588, 625, 860
HspAI GCGC 1 cut(s) 409
Kzo9I GATC 4 cut(s) 301, 412, 445, 715
LweI GCATC 3 cut(s) 439, 817, 1037
MaeI CTAG 3 cut(s) 188, 342, 366
MaeII ACGT 3 cut(s) 450, 499, 606
MaeIII GTNAC 3 cut(s) 38, 454, 709
MalI GATC 4 cut(s) 303, 414, 447, 717
MboI GATC 4 cut(s) 301, 412, 445, 715
MboII GAAGA 5 cut(s) 236, 455, 479, 650, 836
MflI RGATCY 1 cut(s) 301
MhlI GDGCHC 3 cut(s) 658, 798, 1016
MluCI AATT 6 cut(s) 392, 403, 643, 705, 722, 1042
MnlI CCTC 6 cut(s) 60, 139, 625, 679, 813, 1058
MseI TTAA 4 cut(s) 107, 117, 260, 668
MslI CAYNNNNRTG 3 cut(s) 168, 201, 855
MspI CCGG 1 cut(s) 927
MspR9I CCNGG 1 cut(s) 699
MvaI CCWGG 1 cut(s) 699
MvnI CGCG 1 cut(s) 411
MwoI GCNNNNNNNGC 2 cut(s) 793, 812
NdeII GATC 4 cut(s) 301, 412, 445, 715
NlaIII CATG 6 cut(s) 173, 233, 515, 588, 625, 860
NlaIV GGNNCC 2 cut(s) 797, 862
NmeAIII GCCGAG 1 cut(s) 323
NmuCI GTSAC 2 cut(s) 454, 709
NspI RCATGY 3 cut(s) 515, 588, 625
PciI ACATGT 2 cut(s) 511, 621
PcsI WCGNNNNNNNCGW 1 cut(s) 850
PfeI GAWTC 2 cut(s) 159, 689
PmaCI CACGTG 1 cut(s) 451
PmlI CACGTG 1 cut(s) 451
Ppu21I YACGTR 2 cut(s) 451, 500
PscI ACATGT 2 cut(s) 511, 621
PsiI TTATAA 1 cut(s) 521
Psp1406I AACGTT 1 cut(s) 606
Psp6I CCWGG 1 cut(s) 697
PspCI CACGTG 1 cut(s) 451
PspFI CCCAGC 1 cut(s) 815
PspGI CCWGG 1 cut(s) 697
PspN4I GGNNCC 2 cut(s) 797, 862
PspPI GGNCC 1 cut(s) 860
PsuI RGATCY 1 cut(s) 301
RsaI GTAC 5 cut(s) 16, 141, 502, 905, 935
RsaNI GTAC 5 cut(s) 15, 140, 501, 904, 934
RseI CAYNNNNRTG 3 cut(s) 168, 201, 855
SaqAI TTAA 4 cut(s) 107, 117, 260, 668
Sau3AI GATC 4 cut(s) 301, 412, 445, 715
Sau96I GGNCC 1 cut(s) 860
ScrFI CCNGG 1 cut(s) 699
SduI GDGCHC 3 cut(s) 658, 798, 1016
SfaNI GCATC 3 cut(s) 439, 817, 1037
SinI GGWCC 1 cut(s) 860
SmiMI CAYNNNNRTG 3 cut(s) 168, 201, 855
SmlI CTYRAG 1 cut(s) 143
SmoI CTYRAG 1 cut(s) 143
SnaBI TACGTA 1 cut(s) 500
Sse9I AATT 6 cut(s) 392, 403, 643, 705, 722, 1042
SsiI CCGC 2 cut(s) 156, 1026
SspI AATATT 2 cut(s) 121, 997
SspMI CTAG 3 cut(s) 188, 342, 366
StyD4I CCNGG 1 cut(s) 697
StyI CCWWGG 1 cut(s) 270
TaaI ACNGT 2 cut(s) 842, 854
TaiI ACGT 3 cut(s) 453, 502, 609
TaqI TCGA 2 cut(s) 718, 983
TasI AATT 6 cut(s) 392, 403, 643, 705, 722, 1042
TatI WGTACW 1 cut(s) 933
TfiI GAWTC 2 cut(s) 159, 689
Tru1I TTAA 4 cut(s) 107, 117, 260, 668
Tru9I TTAA 4 cut(s) 107, 117, 260, 668
TscAI CASTG 6 cut(s) 463, 595, 663, 718, 748, 814
TseFI GTSAC 2 cut(s) 454, 709
Tsp45I GTSAC 2 cut(s) 454, 709
TspDTI ATGAA 3 cut(s) 66, 749, 966
TspRI CASTG 6 cut(s) 463, 595, 663, 718, 748, 814
VpaK11BI GGWCC 1 cut(s) 860
XapI RAATTY 1 cut(s) 403
XbaI TCTAGA 1 cut(s) 187
XceI RCATGY 3 cut(s) 515, 588, 625
XcmI CCANNNNNNNNNTGG 1 cut(s) 854
XspI CTAG 3 cut(s) 188, 342, 366
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.