Rh2AG464800

protein FAR1-RELATED SEQUENCE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0000143
Physical Location & Seq
Forward (+)
68294998 .. 68296016
1019 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG464800.1

Sequence Viewer

Length: 360 bp
ATGAATGCATTTTCAGGCCATGATAGTCATTTATCGGATCCTACAGTTGGGTCTAGAGCTCAAGGAAAAAATTTGAAGAAGCATTCAAAGAATCAAAGAGAAGGAAGGACCAAAGAGTCGGCATTATCCATAAAAAGGCAAAACAAAGAGTTTAAAAATTCAAAACAAAAGGTAAATTTGATATCTCAATCTGTTCCAATTCCTCCAGTTACTCCTCTATGGCACAGGTACCAAGTTAATAATGGACAGTTGTACAACATTTATGAGCAACGCATAGATCAATTCAAGAAACTCGAAAATATGGAAGACGTTGCCACCACAGATACATTTGCAGACATTGTGCATCTTGATATCGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE

Protein Analysis

119

Amino Acids

13.69

Weight (kDa)

9.4

Isoelectric Point (pI)

30.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000143)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G76710 AT1G76710 AT1G76710 AT1G76710
fragaria_vesca FvH4_1g20063 FvH4_2g15231 FvH4_3g04011 FvH4_3g28681 FvH4_4g01411 FvH4_4g10181 FvH4_4g15922 FvH4_4g16651 FvH4_4g16652 FvH4_5g13892 FvH4_5g13893 FvH4_5g20623 FvH4_5g20623 FvH4_5g20623 FvH4_5g20623 FvH4_5g25511 FvH4_6g12551 FvH4_6g12552 FvH4_6g38841 FvH4_7g04391
malus_domestica MD05G1031300.v1.1 MD05G1031400.v1.1 MD05G1031500.v1.1 MD08G1164400.v1.1 MD10G1032900.v1.1 MD10G1033000.v1.1 MD10G1033100.v1.1
prunus_persica Prupe.3G240700_v2.0.a1 Prupe.7G144600_v2.0.a1 Prupe.8G038500_v2.0.a1 Prupe.8G038500_v2.0.a1
pyrus_communis pycom05g02250 pycom05g02260 pycom05g02270 pycom05g02280 pycom08g14160 pycom10g02100 pycom10g02110 pycom10g02130
rosa_chinensis RchiOBHm_Chr1g0329481 RchiOBHm_Chr1g0329491 RchiOBHm_Chr1g0341531 RchiOBHm_Chr3g0464811 RchiOBHm_Chr3g0494701 RchiOBHm_Chr3g0497501 RchiOBHm_Chr4g0385841 RchiOBHm_Chr5g0061181 RchiOBHm_Chr6g0263001 RchiOBHm_Chr7g0193111 RchiOBHm_Chr7g0206281 RchiOBHm_Chr7g0206311
rosa_laevigata RLG00000018908 RLG00000028528 RLG00000028803 RLG00000029882 RLG00000029883 RLG00000030361
rosa_multiflora Rmu_co8196328.1_g000001 Rmu_co8259135.1_g000001 Rmu_co8269185.1_g000001 Rmu_sc0000076.1_g000019 Rmu_sc0000311.1_g000007 Rmu_sc0000429.1_g000038 Rmu_sc0000429.1_g000039 Rmu_sc0000429.1_g000040 Rmu_sc0000511.1_g000005 Rmu_sc0000539.1_g000054 Rmu_sc0000566.1_g000039 Rmu_sc0000805.1_g000032 Rmu_sc0000870.1_g000073 Rmu_sc0000870.1_g000074 Rmu_sc0001010.1_g000018 Rmu_sc0001083.1_g000013 Rmu_sc0001114.1_g000011 Rmu_sc0001702.1_g000027 Rmu_sc0001779.1_g000012 Rmu_sc0002923.1_g000036 Rmu_sc0003242.1_g000011 Rmu_sc0003291.1_g000036 Rmu_sc0003393.1_g000012 Rmu_sc0003872.1_g000016 Rmu_sc0003872.1_g000017 Rmu_sc0003872.1_g000018 Rmu_sc0004084.1_g000020 Rmu_sc0004386.1_g000005 Rmu_sc0004622.1_g000005 Rmu_sc0004742.1_g000021 Rmu_sc0004755.1_g000020 Rmu_sc0004805.1_g000036 Rmu_sc0005065.1_g000006 Rmu_sc0005177.1_g000004 Rmu_sc0006373.1_g000003 Rmu_sc0006373.1_g000004 Rmu_sc0007121.1_g000002 Rmu_sc0007943.1_g000003 Rmu_sc0010368.1_g000006 Rmu_sc0010543.1_g000001 Rmu_sc0012591.1_g000006 Rmu_sc0013504.1_g000009 Rmu_sc0015025.1_g000001 Rmu_sc0016170.1_g000001 Rmu_sc0017156.1_g000001 Rmu_sc0026439.1_g000001
rosa_roxburghii Rroxscaffold_175G00432280 Rroxscaffold_1G00030190 Rroxscaffold_1G00030880 Rroxscaffold_2G00090520 Rroxscaffold_3G00227940 Rroxscaffold_3G00233400 Rroxscaffold_3G00238500 Rroxscaffold_3G00251650 Rroxscaffold_4G00301570 Rroxscaffold_4G00321040 Rroxscaffold_5G00350880 Rroxscaffold_7G00184400
rosa_rugosa Rorug01G0080800 Rorug01G0080900 Rorug01G0193900 Rorug02G0275900 Rorug02G0275900 Rorug02G0275900 Rorug02G0305400 Rorug02G0311800 Rorug02G0350400 Rorug02G0381300 Rorug03G0136700 Rorug03G0181900 Rorug03G0268000 Rorug04G0301600 Rorug05G0175100 Rorug05G0250700 Rorug05G0298200 Rorug05G0596000 Rorug06G0029500 Rorug07G0094300 Rorug07G0094300 Rorug07G0095400 Rorug07G0140100
rosa_samantha Rh1AG099200 Rh1AG190500 Rh1BG078900 Rh1BG079000 Rh1BG079100 Rh1CG084600 Rh1CG084700 Rh1CG095300 Rh1CG175900 Rh1DG103300 Rh1DG150400 Rh2AG079300 Rh2AG272400 Rh2AG464800 Rh2AG507400 Rh2DG078300 Rh2DG078400 Rh3CG206900 Rh3CG295400 Rh3DG206800 Rh3DG356200 Rh4CG071500 Rh4CG179200 Rh4DG064700 Rh5CG362400 Rh7AG212300 Rh7AG226200 Rh7BG222200
rosa_wichuraiana Rw0G009990 Rw0G011260 Rw0G011270 Rw0G012910 Rw0G013740 Rw1G007740 Rw1G013050 Rw1G014230 Rw2G014270 Rw3G012720 Rw3G028110 Rw4G006630 Rw4G015270 Rw4G016160 Rw4G031380 Rw5G011440 Rw5G029180 Rw5G048360 Rw5G048430 Rw5G048780 Rw6G005250 Rw6G006390 Rw7G002840 Rw7G014080 Rw7G019650 Rw7G032790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 115
Acc65I GGTACC 1 cut(s) 228
AccB1I GGYRCC 1 cut(s) 228
AclWI GGATC 2 cut(s) 32, 45
AcsI RAATTY 3 cut(s) 70, 157, 175
AfaI GTAC 2 cut(s) 230, 254
AfiI CCNNNNNNNGG 2 cut(s) 47, 135
AgsI TTSAA 4 cut(s) 76, 87, 162, 286
AluBI AGCT 1 cut(s) 59
AluI AGCT 1 cut(s) 59
Alw21I GWGCWC 1 cut(s) 61
AlwI GGATC 2 cut(s) 32, 45
AoxI GGCC 1 cut(s) 16
ApoI RAATTY 3 cut(s) 70, 157, 175
Asp718I GGTACC 1 cut(s) 228
AspS9I GGNCC 1 cut(s) 108
AvaII GGWCC 1 cut(s) 108
BamHI GGATCC 1 cut(s) 37
BanI GGYRCC 1 cut(s) 228
BanII GRGCYC 1 cut(s) 61
BbsI GAAGAC 1 cut(s) 312
Bbv12I GWGCWC 1 cut(s) 61
BfaI CTAG 1 cut(s) 54
BfmI CTRYAG 1 cut(s) 42
Bme18I GGWCC 1 cut(s) 108
BmgT120I GGNCC 1 cut(s) 108
BmiI GGNNCC 2 cut(s) 39, 230
BmsI GCATC 1 cut(s) 352
BpiI GAAGAC 1 cut(s) 312
BpmI CTGGAG 1 cut(s) 189
BpuEI CTTGAG 1 cut(s) 45
Bsa29I ATCGAT 1 cut(s) 354
Bsc4I CCNNNNNNNGG 2 cut(s) 47, 135
Bse1I ACTGG 1 cut(s) 206
BseCI ATCGAT 1 cut(s) 354
BseLI CCNNNNNNNGG 2 cut(s) 47, 135
BseNI ACTGG 1 cut(s) 206
BseRI GAGGAG 1 cut(s) 204
BshFI GGCC 1 cut(s) 18
BshNI GGYRCC 1 cut(s) 228
BshVI ATCGAT 1 cut(s) 354
BsiHKAI GWGCWC 1 cut(s) 61
BslI CCNNNNNNNGG 2 cut(s) 47, 135
BsmI GAATGC 2 cut(s) 10, 82
BsnI GGCC 1 cut(s) 18
Bsp1286I GDGCHC 1 cut(s) 61
Bsp1407I TGTACA 1 cut(s) 252
Bsp143I GATC 2 cut(s) 37, 277
BspANI GGCC 1 cut(s) 18
BspDI ATCGAT 1 cut(s) 354
BspLI GGNNCC 2 cut(s) 39, 230
BspPI GGATC 2 cut(s) 32, 45
BspT107I GGYRCC 1 cut(s) 228
BsrGI TGTACA 1 cut(s) 252
BsrI ACTGG 1 cut(s) 206
BssMI GATC 2 cut(s) 37, 277
Bst4CI ACNGT 2 cut(s) 46, 249
BstAUI TGTACA 1 cut(s) 252
BstKTI GATC 2 cut(s) 40, 280
BstMBI GATC 2 cut(s) 37, 277
BstSFI CTRYAG 1 cut(s) 42
BstV2I GAAGAC 1 cut(s) 312
BstX2I RGATCY 1 cut(s) 37
BstYI RGATCY 1 cut(s) 37
Bsu15I ATCGAT 1 cut(s) 354
BsuRI GGCC 1 cut(s) 18
BsuTUI ATCGAT 1 cut(s) 354
Cfr13I GGNCC 1 cut(s) 108
ClaI ATCGAT 1 cut(s) 354
Csp6I GTAC 2 cut(s) 229, 253
CviAII CATG 1 cut(s) 20
CviJI RGCY 2 cut(s) 18, 59
CviKI_1 RGCY 2 cut(s) 18, 59
CviQI GTAC 2 cut(s) 229, 253
DpnI GATC 2 cut(s) 39, 279
DpnII GATC 2 cut(s) 37, 277
DraI TTTAAA 1 cut(s) 154
DrdI GACNNNNNNGTC 1 cut(s) 115
DseDI GACNNNNNNGTC 1 cut(s) 115
Ecl136II GAGCTC 1 cut(s) 59
Eco24I GRGCYC 1 cut(s) 61
Eco32I GATATC 2 cut(s) 183, 352
Eco47I GGWCC 1 cut(s) 108
Eco53kI GAGCTC 1 cut(s) 59
EcoICRI GAGCTC 1 cut(s) 59
EcoRV GATATC 2 cut(s) 183, 352
EcoT22I ATGCAT 1 cut(s) 10
EcoT38I GRGCYC 1 cut(s) 61
FaeI CATG 1 cut(s) 23
FaiI YATR 6 cut(s) 21, 131, 220, 264, 275, 302
FatI CATG 1 cut(s) 19
FriOI GRGCYC 1 cut(s) 61
FspBI CTAG 1 cut(s) 54
GsuI CTGGAG 1 cut(s) 189
HaeIII GGCC 1 cut(s) 18
Hin1II CATG 1 cut(s) 23
HinfI GANTC 2 cut(s) 91, 116
Hpy188I TCNGA 1 cut(s) 37
Hpy188III TCNNGA 3 cut(s) 54, 286, 347
HpyAV CCTTC 2 cut(s) 95, 99
HpyCH4III ACNGT 2 cut(s) 46, 249
HpyCH4IV ACGT 1 cut(s) 309
HpyCH4V TGCA 3 cut(s) 8, 332, 343
HpySE526I ACGT 1 cut(s) 309
Hsp92II CATG 1 cut(s) 23
KpnI GGTACC 1 cut(s) 232
Kzo9I GATC 2 cut(s) 37, 277
LpnPI CCDG 2 cut(s) 211, 219
LweI GCATC 1 cut(s) 352
MaeI CTAG 1 cut(s) 54
MaeII ACGT 1 cut(s) 309
MaeIII GTNAC 1 cut(s) 208
MalI GATC 2 cut(s) 39, 279
MboI GATC 2 cut(s) 37, 277
MboII GAAGA 2 cut(s) 88, 317
MflI RGATCY 1 cut(s) 37
MhlI GDGCHC 1 cut(s) 61
MluCI AATT 5 cut(s) 70, 157, 175, 198, 281
MlyI GAGTC 1 cut(s) 125
MnlI CCTC 2 cut(s) 213, 225
Mph1103I ATGCAT 1 cut(s) 10
MseI TTAA 2 cut(s) 153, 237
Mva1269I GAATGC 2 cut(s) 10, 82
NdeII GATC 2 cut(s) 37, 277
NlaIII CATG 1 cut(s) 23
NlaIV GGNNCC 2 cut(s) 39, 230
NsiI ATGCAT 1 cut(s) 10
PctI GAATGC 2 cut(s) 10, 82
PfeI GAWTC 1 cut(s) 91
PleI GAGTC 1 cut(s) 124
PpsI GAGTC 1 cut(s) 124
Psp124BI GAGCTC 1 cut(s) 61
PspN4I GGNNCC 2 cut(s) 39, 230
PspPI GGNCC 1 cut(s) 108
PsuI RGATCY 1 cut(s) 37
RsaI GTAC 2 cut(s) 230, 254
RsaNI GTAC 2 cut(s) 229, 253
SacI GAGCTC 1 cut(s) 61
SaqAI TTAA 2 cut(s) 153, 237
Sau3AI GATC 2 cut(s) 37, 277
Sau96I GGNCC 1 cut(s) 108
SchI GAGTC 1 cut(s) 125
SduI GDGCHC 1 cut(s) 61
SetI ASST 4 cut(s) 61, 174, 230, 312
SfaNI GCATC 1 cut(s) 352
SfcI CTRYAG 1 cut(s) 42
SgeI CNNG 9 cut(s) 27, 32, 66, 74, 218, 238, 245, 298, 305
SinI GGWCC 1 cut(s) 108
SmlI CTYRAG 1 cut(s) 60
SmoI CTYRAG 1 cut(s) 60
Sse9I AATT 5 cut(s) 70, 157, 175, 198, 281
SspMI CTAG 1 cut(s) 54
SstI GAGCTC 1 cut(s) 61
TaaI ACNGT 2 cut(s) 46, 249
TaiI ACGT 1 cut(s) 312
TaqI TCGA 2 cut(s) 294, 354
TasI AATT 5 cut(s) 70, 157, 175, 198, 281
TatI WGTACW 1 cut(s) 252
TfiI GAWTC 1 cut(s) 91
Tru1I TTAA 2 cut(s) 153, 237
Tru9I TTAA 2 cut(s) 153, 237
TspDTI ATGAA 1 cut(s) 17
VpaK11BI GGWCC 1 cut(s) 108
XapI RAATTY 3 cut(s) 70, 157, 175
XbaI TCTAGA 1 cut(s) 53
XcmI CCANNNNNNNNNTGG 1 cut(s) 239
XspI CTAG 1 cut(s) 54
Zsp2I ATGCAT 1 cut(s) 10
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.