Rroxscaffold_3G00251650

protein FAR1-RELATED SEQUENCE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0000143
Physical Location & Seq
Forward (+)
45577294 .. 45582744
5451 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00251650.1

Sequence Viewer

Length: 564 bp
ATGATTTTTGGACGCACATCAACTGATATACCATTTTTTGTGGGTATTGTATTCCTTTCTTCTAATAAAAAAGAAAGTTATGTATGGGCTTTACGAACATTGCAGGGTTTGATGGTTACTAGTGGTAATACTATGCCTGATATGATTGTCTTAATAACTACGGAGGTGGCTTTGATGGAAGCCGTTGAGGTTGTTTTTAGTAGGACAAAGCTTTTGTTGTGTGCGTGGGCCTTTCCTAGCTTTGTGGGATTTGCTTATGAGGAGGTATTTGACTCGAAGGAGGAGTTAGATTATTTTCTGAAGAGGTTGGATGTATTGATATCATCTCCCACTGCAGCTAATTTTGAGTTGCAGTTACTGCAACTACATGATGACTTTAGCAGATATCCTGCAGTACTTGAGTACGTAACCCACACTTGGTTGAACCCACATAAGGAAAAGCTTGTTGCAGCATGGACAAATGCTTTTATGCATTTTGGGGTCGCAAATTCGCTCAGGTATGCCATGTTTACTGTTGAAATAAACTTCCACTTATTTGATCAATTTCATTGTTGTTTTCGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE

Protein Analysis

187

Amino Acids

21.61

Weight (kDa)

5.45

Isoelectric Point (pI)

34.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MULE PF10551 7 - 77 7.3e-06 MULE transposase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000143)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G76710 AT1G76710 AT1G76710 AT1G76710
fragaria_vesca FvH4_1g20063 FvH4_2g15231 FvH4_3g04011 FvH4_3g28681 FvH4_4g01411 FvH4_4g10181 FvH4_4g15922 FvH4_4g16651 FvH4_4g16652 FvH4_5g13892 FvH4_5g13893 FvH4_5g20623 FvH4_5g20623 FvH4_5g20623 FvH4_5g20623 FvH4_5g25511 FvH4_6g12551 FvH4_6g12552 FvH4_6g38841 FvH4_7g04391
malus_domestica MD05G1031300.v1.1 MD05G1031400.v1.1 MD05G1031500.v1.1 MD08G1164400.v1.1 MD10G1032900.v1.1 MD10G1033000.v1.1 MD10G1033100.v1.1
prunus_persica Prupe.3G240700_v2.0.a1 Prupe.7G144600_v2.0.a1 Prupe.8G038500_v2.0.a1 Prupe.8G038500_v2.0.a1
pyrus_communis pycom05g02250 pycom05g02260 pycom05g02270 pycom05g02280 pycom08g14160 pycom10g02100 pycom10g02110 pycom10g02130
rosa_chinensis RchiOBHm_Chr1g0329481 RchiOBHm_Chr1g0329491 RchiOBHm_Chr1g0341531 RchiOBHm_Chr3g0464811 RchiOBHm_Chr3g0494701 RchiOBHm_Chr3g0497501 RchiOBHm_Chr4g0385841 RchiOBHm_Chr5g0061181 RchiOBHm_Chr6g0263001 RchiOBHm_Chr7g0193111 RchiOBHm_Chr7g0206281 RchiOBHm_Chr7g0206311
rosa_laevigata RLG00000018908 RLG00000028528 RLG00000028803 RLG00000029882 RLG00000029883 RLG00000030361
rosa_multiflora Rmu_co8196328.1_g000001 Rmu_co8259135.1_g000001 Rmu_co8269185.1_g000001 Rmu_sc0000076.1_g000019 Rmu_sc0000311.1_g000007 Rmu_sc0000429.1_g000038 Rmu_sc0000429.1_g000039 Rmu_sc0000429.1_g000040 Rmu_sc0000511.1_g000005 Rmu_sc0000539.1_g000054 Rmu_sc0000566.1_g000039 Rmu_sc0000805.1_g000032 Rmu_sc0000870.1_g000073 Rmu_sc0000870.1_g000074 Rmu_sc0001010.1_g000018 Rmu_sc0001083.1_g000013 Rmu_sc0001114.1_g000011 Rmu_sc0001702.1_g000027 Rmu_sc0001779.1_g000012 Rmu_sc0002923.1_g000036 Rmu_sc0003242.1_g000011 Rmu_sc0003291.1_g000036 Rmu_sc0003393.1_g000012 Rmu_sc0003872.1_g000016 Rmu_sc0003872.1_g000017 Rmu_sc0003872.1_g000018 Rmu_sc0004084.1_g000020 Rmu_sc0004386.1_g000005 Rmu_sc0004622.1_g000005 Rmu_sc0004742.1_g000021 Rmu_sc0004755.1_g000020 Rmu_sc0004805.1_g000036 Rmu_sc0005065.1_g000006 Rmu_sc0005177.1_g000004 Rmu_sc0006373.1_g000003 Rmu_sc0006373.1_g000004 Rmu_sc0007121.1_g000002 Rmu_sc0007943.1_g000003 Rmu_sc0010368.1_g000006 Rmu_sc0010543.1_g000001 Rmu_sc0012591.1_g000006 Rmu_sc0013504.1_g000009 Rmu_sc0015025.1_g000001 Rmu_sc0016170.1_g000001 Rmu_sc0017156.1_g000001 Rmu_sc0026439.1_g000001
rosa_roxburghii Rroxscaffold_175G00432280 Rroxscaffold_1G00030190 Rroxscaffold_1G00030880 Rroxscaffold_2G00090520 Rroxscaffold_3G00227940 Rroxscaffold_3G00233400 Rroxscaffold_3G00238500 Rroxscaffold_3G00251650 Rroxscaffold_4G00301570 Rroxscaffold_4G00321040 Rroxscaffold_5G00350880 Rroxscaffold_7G00184400
rosa_rugosa Rorug01G0080800 Rorug01G0080900 Rorug01G0193900 Rorug02G0275900 Rorug02G0275900 Rorug02G0275900 Rorug02G0305400 Rorug02G0311800 Rorug02G0350400 Rorug02G0381300 Rorug03G0136700 Rorug03G0181900 Rorug03G0268000 Rorug04G0301600 Rorug05G0175100 Rorug05G0250700 Rorug05G0298200 Rorug05G0596000 Rorug06G0029500 Rorug07G0094300 Rorug07G0094300 Rorug07G0095400 Rorug07G0140100
rosa_samantha Rh1AG099200 Rh1AG190500 Rh1BG078900 Rh1BG079000 Rh1BG079100 Rh1CG084600 Rh1CG084700 Rh1CG095300 Rh1CG175900 Rh1DG103300 Rh1DG150400 Rh2AG079300 Rh2AG272400 Rh2AG464800 Rh2AG507400 Rh2DG078300 Rh2DG078400 Rh3CG206900 Rh3CG295400 Rh3DG206800 Rh3DG356200 Rh4CG071500 Rh4CG179200 Rh4DG064700 Rh5CG362400 Rh7AG212300 Rh7AG226200 Rh7BG222200
rosa_wichuraiana Rw0G009990 Rw0G011260 Rw0G011270 Rw0G012910 Rw0G013740 Rw1G007740 Rw1G013050 Rw1G014230 Rw2G014270 Rw3G012720 Rw3G028110 Rw4G006630 Rw4G015270 Rw4G016160 Rw4G031380 Rw5G011440 Rw5G029180 Rw5G048360 Rw5G048430 Rw5G048780 Rw6G005250 Rw6G006390 Rw7G002840 Rw7G014080 Rw7G019650 Rw7G032790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 487
AcuI CTGAAG 1 cut(s) 320
AfaI GTAC 2 cut(s) 396, 404
AfiI CCNNNNNNNGG 2 cut(s) 417, 433
AgsI TTSAA 2 cut(s) 424, 518
AhlI ACTAGT 1 cut(s) 119
AluBI AGCT 4 cut(s) 211, 240, 338, 442
AluI AGCT 4 cut(s) 211, 240, 338, 442
AlwNI CAGNNNCTG 1 cut(s) 358
AoxI GGCC 1 cut(s) 228
ApeKI GCWGC 2 cut(s) 335, 449
ApoI RAATTY 1 cut(s) 487
ArsI GACNNNNNNTTYG 2 cut(s) 196, 228
AspS9I GGNCC 1 cut(s) 228
BbvI GCAGC 2 cut(s) 347, 461
BccI CCATC 2 cut(s) 106, 169
BceAI ACGGC 1 cut(s) 167
BclI TGATCA 1 cut(s) 538
BcuI ACTAGT 1 cut(s) 119
BfaI CTAG 2 cut(s) 120, 237
BfmI CTRYAG 2 cut(s) 333, 390
BisI GCNGC 2 cut(s) 336, 450
BlsI GCNGC 2 cut(s) 337, 451
BmcAI AGTACT 1 cut(s) 396
BmgT120I GGNCC 1 cut(s) 228
Bpu10I CCTNAGC 1 cut(s) 494
BpuEI CTTGAG 1 cut(s) 419
BsaAI YACGTR 1 cut(s) 406
Bsc4I CCNNNNNNNGG 2 cut(s) 417, 433
Bse3DI GCAATG 1 cut(s) 98
BseGI GGATG 1 cut(s) 316
BseLI CCNNNNNNNGG 2 cut(s) 417, 433
BseMI GCAATG 1 cut(s) 98
BseMII CTCAG 1 cut(s) 508
BseRI GAGGAG 2 cut(s) 275, 296
BseXI GCAGC 2 cut(s) 347, 461
BshFI GGCC 1 cut(s) 230
BslI CCNNNNNNNGG 2 cut(s) 417, 433
BsnI GGCC 1 cut(s) 230
Bsp143I GATC 1 cut(s) 538
BspANI GGCC 1 cut(s) 230
BspCNI CTCAG 1 cut(s) 507
BspMAI CTGCAG 2 cut(s) 337, 394
BsrDI GCAATG 1 cut(s) 98
BssMI GATC 1 cut(s) 538
Bst4CI ACNGT 1 cut(s) 514
Bst6I CTCTTC 1 cut(s) 296
BstAPI GCANNNNNTGC 1 cut(s) 358
BstBAI YACGTR 1 cut(s) 406
BstDEI CTNAG 1 cut(s) 494
BstF5I GGATG 1 cut(s) 316
BstKTI GATC 1 cut(s) 541
BstMBI GATC 1 cut(s) 538
BstMWI GCNNNNNNNGC 1 cut(s) 358
BstSFI CTRYAG 2 cut(s) 333, 390
BstSNI TACGTA 1 cut(s) 406
BstV1I GCAGC 2 cut(s) 347, 461
BsuRI GGCC 1 cut(s) 230
BtsCI GGATG 1 cut(s) 316
BtsI GCAGTG 1 cut(s) 330
BtsIMutI CAGTG 1 cut(s) 330
CaiI CAGNNNCTG 1 cut(s) 358
Cfr13I GGNCC 1 cut(s) 228
CseI GACGC 1 cut(s) 21
Csp6I GTAC 2 cut(s) 395, 403
CviAII CATG 3 cut(s) 368, 453, 505
CviJI RGCY 8 cut(s) 89, 170, 182, 211, 230, 240, 338, 442
CviKI_1 RGCY 8 cut(s) 89, 170, 182, 211, 230, 240, 338, 442
CviQI GTAC 2 cut(s) 395, 403
DdeI CTNAG 1 cut(s) 494
DpnI GATC 1 cut(s) 540
DpnII GATC 1 cut(s) 538
Eam1104I CTCTTC 1 cut(s) 296
EarI CTCTTC 1 cut(s) 296
Eco105I TACGTA 1 cut(s) 406
Eco32I GATATC 2 cut(s) 321, 386
Eco57I CTGAAG 1 cut(s) 320
EcoRV GATATC 2 cut(s) 321, 386
EcoT22I ATGCAT 1 cut(s) 474
FaeI CATG 3 cut(s) 371, 456, 508
FatI CATG 3 cut(s) 367, 452, 504
FbaI TGATCA 1 cut(s) 538
Fnu4HI GCNGC 2 cut(s) 336, 450
FokI GGATG 1 cut(s) 323
Fsp4HI GCNGC 2 cut(s) 336, 450
FspBI CTAG 2 cut(s) 120, 237
GluI GCNGC 2 cut(s) 336, 450
HaeIII GGCC 1 cut(s) 230
HgaI GACGC 1 cut(s) 21
Hin1II CATG 3 cut(s) 371, 456, 508
HindIII AAGCTT 2 cut(s) 209, 440
HinfI GANTC 1 cut(s) 272
Hpy166II GTNNAC 1 cut(s) 510
Hpy188I TCNGA 1 cut(s) 300
Hpy8I GTNNAC 1 cut(s) 510
HpyAV CCTTC 1 cut(s) 271
HpyCH4III ACNGT 1 cut(s) 514
HpyCH4IV ACGT 1 cut(s) 405
HpyCH4V TGCA 7 cut(s) 103, 335, 352, 361, 392, 449, 472
HpyF10VI GCNNNNNNNGC 1 cut(s) 358
HpyF3I CTNAG 1 cut(s) 494
HpySE526I ACGT 1 cut(s) 405
Hsp92II CATG 3 cut(s) 371, 456, 508
Ksp22I TGATCA 1 cut(s) 538
Kzo9I GATC 1 cut(s) 538
LpnPI CCDG 4 cut(s) 89, 150, 402, 481
Lsp1109I GCAGC 2 cut(s) 347, 461
MaeI CTAG 2 cut(s) 120, 237
MaeII ACGT 1 cut(s) 405
MaeIII GTNAC 3 cut(s) 115, 354, 406
MalI GATC 1 cut(s) 540
MboI GATC 1 cut(s) 538
MboII GAAGA 2 cut(s) 51, 313
MluCI AATT 3 cut(s) 340, 487, 542
MlyI GAGTC 1 cut(s) 266
MmeI TCCRAC 1 cut(s) 288
MnlI CCTC 6 cut(s) 157, 181, 253, 256, 274, 297
Mph1103I ATGCAT 1 cut(s) 474
MseI TTAA 2 cut(s) 152, 562
MwoI GCNNNNNNNGC 1 cut(s) 358
NdeII GATC 1 cut(s) 538
NlaIII CATG 3 cut(s) 371, 456, 508
NsiI ATGCAT 1 cut(s) 474
PkrI GCNGC 2 cut(s) 337, 451
PleI GAGTC 1 cut(s) 266
PpsI GAGTC 1 cut(s) 266
Ppu21I YACGTR 1 cut(s) 406
PspPI GGNCC 1 cut(s) 228
PstI CTGCAG 2 cut(s) 337, 394
PstNI CAGNNNCTG 1 cut(s) 358
RsaI GTAC 2 cut(s) 396, 404
RsaNI GTAC 2 cut(s) 395, 403
SaqAI TTAA 2 cut(s) 152, 562
SatI GCNGC 2 cut(s) 336, 450
Sau3AI GATC 1 cut(s) 538
Sau96I GGNCC 1 cut(s) 228
ScaI AGTACT 1 cut(s) 396
SchI GAGTC 1 cut(s) 266
SfcI CTRYAG 2 cut(s) 333, 390
SmlI CTYRAG 1 cut(s) 398
SmoI CTYRAG 1 cut(s) 398
SnaBI TACGTA 1 cut(s) 406
SpeI ACTAGT 1 cut(s) 119
Sse9I AATT 3 cut(s) 340, 487, 542
SspMI CTAG 2 cut(s) 120, 237
TaaI ACNGT 1 cut(s) 514
TaiI ACGT 1 cut(s) 408
TaqI TCGA 1 cut(s) 275
TasI AATT 3 cut(s) 340, 487, 542
TatI WGTACW 1 cut(s) 394
Tru1I TTAA 2 cut(s) 152, 562
Tru9I TTAA 2 cut(s) 152, 562
TscAI CASTG 1 cut(s) 337
TseI GCWGC 2 cut(s) 335, 449
TspDTI ATGAA 1 cut(s) 536
TspGWI ACGGA 1 cut(s) 176
TspRI CASTG 1 cut(s) 337
XapI RAATTY 1 cut(s) 487
XspI CTAG 2 cut(s) 120, 237
ZrmI AGTACT 1 cut(s) 396
Zsp2I ATGCAT 1 cut(s) 474
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.