Rroxscaffold_5G00350880

protein FAR1-RELATED SEQUENCE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0000143
Physical Location & Seq
Forward (+)
25591104 .. 25594400
3297 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00350880.1

Sequence Viewer

Length: 1605 bp
ATGGCTGGACATCCATATTGTCGTCGGTTTACTAAAGAGGAAGCCTCACAAGTTGAACAAATGAGTCGGGCTGGCATAAAACCACGTCAAATTCTCTCTTCGCTTCGACAAAGTAATCCCGATCTTCTAGCTGTTTCCAGAAATATATATAGCAAGACATCTCAGTTTAGAAGGGAGAGTCTAGGTGGGCGTTCGATTATTCAAGCATTATTAGATGAGCTTGGTGGTGCTGGTTTTTCTCATAATGTCAAATATGATCACTCTGGTCATTTGACTCATCTATTCTTTGCTCATCCCACTTCCATTGAGTTGACTAAAAGCTACTCTAATGTCTTTGTGATGGATTGTACTTATAAGACAAATAAGTACAAGATGCCATTACTTGAGATTGTAGGAGTGTCGAGTTTCAACACATCATTCTATTCGTGTTTTGTTTTCATGCAAAAAGAGGAACAACAGGATTATCGGTGGGCTCTTGAAATGTTCAGTAAGTTGTTGGGAGATGGTAATCATCCATTGGCGATTATAACTGATAGGGAGTTGGCTTTAATGAAAGCAATACAAGTTGTGTTTCCGATGACTCCTAATCTTTTATGCATATGGCATATTGAAAAAAATATTCTTGCACATTGTAAGGGTCAGTTTAAGGAAGATGCAGATTGGGTTGGTTTTATGTCTTCTTGGAGTACCCTTGTAAAGTCTTGGGACGTGTCAACGTTTAATGAAGCTTGGAACCATTTTCAAATTGAGTACAAAGACTATGCTTCCATTCTAACTTACATTGGCAATACTTGGCTTCCATGGAAAGAGAGGTTTGTATTTGCATGGACCGGACAGATTTCACACTTTGGTAATAATGTTACTTCTAGAGCAGAAGGTGCACATGGAACCTTAAAGAAATATCTTCAAGTTTCTACTGGTGGTCTCCGTGAAGTGAAGGAAAATATTTGTCTTGCTATTCAAAATCAGTTTCAAGAAATTAGAACTCAACTTGCAAGTGAAAAAATTTGTGTTCCTCAAAAGCTTTGCATCCCTTTCTTTAAAGAGGTGATTAATAAGGTATCTTTCTATGCTTTGTTTGAGTTACAAAAGCAATATTTGTTGGCAAATACCAAAGACTATTCATCCCAATGCAAGGGCCAGTTTTCCAAAACCATGGGTCTTCCATGTGTGCACATGATCAAGGAGATGAATATTGAAGTGCTGCCTTTAAATCAGATTCATGAGCAGTGGAGGATTGGCACAAGATCATTCACTAATGATCATCGTGCAAGCTTGGATCACGAAGATCCATTTAGTAGTCTTTTATCTGAGGTTAAAGAGAAGTACGAAAAACAGCCGCTAGAGCAAAAAGAAAATACCATAAGGCAGCTTTCTCAGATTCTTGGTGCATCTTGTCCTTTAATTTTTGAACCTACTCTTCAACCTCACAAAGGTCGTCCGGTAGGATCAAATAAAAGAAAGGAAACTAGCTCTACAAGGCGGGAACCTTCATATTTTGAGAGAGTGGAGAAGGCACCTCGAAAATGTAGTGGGTGCGGTAATATTGGCCATTATCGAAACAAGTGTCCATCAAATAATAAGTCTACCACACTAGGAACATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE

Protein Analysis

534

Amino Acids

61.33

Weight (kDa)

9.04

Isoelectric Point (pI)

50.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ZSWIM1-3_RNaseH-like PF21056 82 - 194 1.2e-12 Zinc finger SWIM domain-containing protein 1/3, RNaseH-like domain
MULE PF10551 111 - 206 4e-25 MULE transposase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000143)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G76710 AT1G76710 AT1G76710 AT1G76710
fragaria_vesca FvH4_1g20063 FvH4_2g15231 FvH4_3g04011 FvH4_3g28681 FvH4_4g01411 FvH4_4g10181 FvH4_4g15922 FvH4_4g16651 FvH4_4g16652 FvH4_5g13892 FvH4_5g13893 FvH4_5g20623 FvH4_5g20623 FvH4_5g20623 FvH4_5g20623 FvH4_5g25511 FvH4_6g12551 FvH4_6g12552 FvH4_6g38841 FvH4_7g04391
malus_domestica MD05G1031300.v1.1 MD05G1031400.v1.1 MD05G1031500.v1.1 MD08G1164400.v1.1 MD10G1032900.v1.1 MD10G1033000.v1.1 MD10G1033100.v1.1
prunus_persica Prupe.3G240700_v2.0.a1 Prupe.7G144600_v2.0.a1 Prupe.8G038500_v2.0.a1 Prupe.8G038500_v2.0.a1
pyrus_communis pycom05g02250 pycom05g02260 pycom05g02270 pycom05g02280 pycom08g14160 pycom10g02100 pycom10g02110 pycom10g02130
rosa_chinensis RchiOBHm_Chr1g0329481 RchiOBHm_Chr1g0329491 RchiOBHm_Chr1g0341531 RchiOBHm_Chr3g0464811 RchiOBHm_Chr3g0494701 RchiOBHm_Chr3g0497501 RchiOBHm_Chr4g0385841 RchiOBHm_Chr5g0061181 RchiOBHm_Chr6g0263001 RchiOBHm_Chr7g0193111 RchiOBHm_Chr7g0206281 RchiOBHm_Chr7g0206311
rosa_laevigata RLG00000018908 RLG00000028528 RLG00000028803 RLG00000029882 RLG00000029883 RLG00000030361
rosa_multiflora Rmu_co8196328.1_g000001 Rmu_co8259135.1_g000001 Rmu_co8269185.1_g000001 Rmu_sc0000076.1_g000019 Rmu_sc0000311.1_g000007 Rmu_sc0000429.1_g000038 Rmu_sc0000429.1_g000039 Rmu_sc0000429.1_g000040 Rmu_sc0000511.1_g000005 Rmu_sc0000539.1_g000054 Rmu_sc0000566.1_g000039 Rmu_sc0000805.1_g000032 Rmu_sc0000870.1_g000073 Rmu_sc0000870.1_g000074 Rmu_sc0001010.1_g000018 Rmu_sc0001083.1_g000013 Rmu_sc0001114.1_g000011 Rmu_sc0001702.1_g000027 Rmu_sc0001779.1_g000012 Rmu_sc0002923.1_g000036 Rmu_sc0003242.1_g000011 Rmu_sc0003291.1_g000036 Rmu_sc0003393.1_g000012 Rmu_sc0003872.1_g000016 Rmu_sc0003872.1_g000017 Rmu_sc0003872.1_g000018 Rmu_sc0004084.1_g000020 Rmu_sc0004386.1_g000005 Rmu_sc0004622.1_g000005 Rmu_sc0004742.1_g000021 Rmu_sc0004755.1_g000020 Rmu_sc0004805.1_g000036 Rmu_sc0005065.1_g000006 Rmu_sc0005177.1_g000004 Rmu_sc0006373.1_g000003 Rmu_sc0006373.1_g000004 Rmu_sc0007121.1_g000002 Rmu_sc0007943.1_g000003 Rmu_sc0010368.1_g000006 Rmu_sc0010543.1_g000001 Rmu_sc0012591.1_g000006 Rmu_sc0013504.1_g000009 Rmu_sc0015025.1_g000001 Rmu_sc0016170.1_g000001 Rmu_sc0017156.1_g000001 Rmu_sc0026439.1_g000001
rosa_roxburghii Rroxscaffold_175G00432280 Rroxscaffold_1G00030190 Rroxscaffold_1G00030880 Rroxscaffold_2G00090520 Rroxscaffold_3G00227940 Rroxscaffold_3G00233400 Rroxscaffold_3G00238500 Rroxscaffold_3G00251650 Rroxscaffold_4G00301570 Rroxscaffold_4G00321040 Rroxscaffold_5G00350880 Rroxscaffold_7G00184400
rosa_rugosa Rorug01G0080800 Rorug01G0080900 Rorug01G0193900 Rorug02G0275900 Rorug02G0275900 Rorug02G0275900 Rorug02G0305400 Rorug02G0311800 Rorug02G0350400 Rorug02G0381300 Rorug03G0136700 Rorug03G0181900 Rorug03G0268000 Rorug04G0301600 Rorug05G0175100 Rorug05G0250700 Rorug05G0298200 Rorug05G0596000 Rorug06G0029500 Rorug07G0094300 Rorug07G0094300 Rorug07G0095400 Rorug07G0140100
rosa_samantha Rh1AG099200 Rh1AG190500 Rh1BG078900 Rh1BG079000 Rh1BG079100 Rh1CG084600 Rh1CG084700 Rh1CG095300 Rh1CG175900 Rh1DG103300 Rh1DG150400 Rh2AG079300 Rh2AG272400 Rh2AG464800 Rh2AG507400 Rh2DG078300 Rh2DG078400 Rh3CG206900 Rh3CG295400 Rh3DG206800 Rh3DG356200 Rh4CG071500 Rh4CG179200 Rh4DG064700 Rh5CG362400 Rh7AG212300 Rh7AG226200 Rh7BG222200
rosa_wichuraiana Rw0G009990 Rw0G011260 Rw0G011270 Rw0G012910 Rw0G013740 Rw1G007740 Rw1G013050 Rw1G014230 Rw2G014270 Rw3G012720 Rw3G028110 Rw4G006630 Rw4G015270 Rw4G016160 Rw4G031380 Rw5G011440 Rw5G029180 Rw5G048360 Rw5G048430 Rw5G048780 Rw6G005250 Rw6G006390 Rw7G002840 Rw7G014080 Rw7G019650 Rw7G032790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 354, 527
AccB1I GGYRCC 1 cut(s) 1516
AccI GTMKAC 1 cut(s) 1586
AciI CCGC 3 cut(s) 1340, 1483, 1539
AclI AACGTT 1 cut(s) 716
AclWI GGATC 3 cut(s) 1283, 1287, 1456
AcoI YGGCCR 1 cut(s) 1549
AcsI RAATTY 2 cut(s) 90, 1005
AfaI GTAC 5 cut(s) 349, 368, 688, 752, 1328
AfiI CCNNNNNNNGG 2 cut(s) 1135, 1433
AflIII ACRYGT 1 cut(s) 708
AjiI CACGTC 2 cut(s) 86, 709
AluBI AGCT 8 cut(s) 131, 220, 321, 728, 1024, 1275, 1372, 1473
AluI AGCT 8 cut(s) 131, 220, 321, 728, 1024, 1275, 1372, 1473
Alw21I GWGCWC 2 cut(s) 883, 1176
Alw26I GTCTC 1 cut(s) 929
Alw44I GTGCAC 2 cut(s) 879, 1172
AlwI GGATC 3 cut(s) 1283, 1287, 1456
AoxI GGCC 2 cut(s) 1138, 1549
ApaLI GTGCAC 2 cut(s) 879, 1172
ApeKI GCWGC 2 cut(s) 1204, 1369
ApoI RAATTY 2 cut(s) 90, 1005
ArsI GACNNNNNNTTYG 4 cut(s) 1552, 1568, 1584, 1600
AseI ATTAAT 1 cut(s) 1053
AspS9I GGNCC 2 cut(s) 828, 1138
AsuHPI GGTGA 1 cut(s) 1060
AvaII GGWCC 1 cut(s) 828
BaeGI GKGCMC 2 cut(s) 883, 1176
BalI TGGCCA 1 cut(s) 1551
BanI GGYRCC 1 cut(s) 1516
BanII GRGCYC 1 cut(s) 475
BbsI GAAGAC 2 cut(s) 669, 1154
Bbv12I GWGCWC 2 cut(s) 883, 1176
BbvI GCAGC 2 cut(s) 1191, 1381
BccI CCATC 3 cut(s) 334, 497, 1579
BclI TGATCA 3 cut(s) 256, 1179, 1261
BcoDI GTCTC 1 cut(s) 929
BfaI CTAG 6 cut(s) 128, 182, 867, 1343, 1470, 1595
BisI GCNGC 3 cut(s) 1205, 1340, 1370
BlsI GCNGC 3 cut(s) 1206, 1341, 1371
Bme18I GGWCC 1 cut(s) 828
BmgBI CACGTC 2 cut(s) 86, 709
BmgT120I GGNCC 2 cut(s) 828, 1138
BmiI GGNNCC 4 cut(s) 734, 889, 1488, 1518
BmsI GCATC 4 cut(s) 363, 643, 1038, 1400
BpiI GAAGAC 2 cut(s) 669, 1154
BplI GAGNNNNNCTC 2 cut(s) 29, 61
BpuEI CTTGAG 1 cut(s) 404
BsaBI GATNNNNATC 1 cut(s) 507
BsaI GGTCTC 1 cut(s) 929
BsaJI CCNNGG 2 cut(s) 800, 1155
BsaWI WCCGGW 2 cut(s) 830, 1441
Bsc4I CCNNNNNNNGG 2 cut(s) 1135, 1433
Bse1I ACTGG 2 cut(s) 922, 1141
Bse8I GATNNNNATC 1 cut(s) 507
BseDI CCNNGG 2 cut(s) 800, 1155
BseGI GGATG 5 cut(s) 10, 292, 511, 1029, 1124
BseJI GATNNNNATC 1 cut(s) 507
BseLI CCNNNNNNNGG 2 cut(s) 1135, 1433
BseMII CTCAG 3 cut(s) 176, 1302, 1391
BseNI ACTGG 2 cut(s) 922, 1141
BseSI GKGCMC 2 cut(s) 883, 1176
BseXI GCAGC 2 cut(s) 1191, 1381
BshFI GGCC 2 cut(s) 1140, 1551
BshNI GGYRCC 1 cut(s) 1516
BsiHKAI GWGCWC 2 cut(s) 883, 1176
BsiSI CCGG 2 cut(s) 831, 1442
BslFI GGGAC 1 cut(s) 719
BslI CCNNNNNNNGG 2 cut(s) 1135, 1433
BsmAI GTCTC 1 cut(s) 929
BsmFI GGGAC 1 cut(s) 719
BsnI GGCC 2 cut(s) 1140, 1551
Bso31I GGTCTC 1 cut(s) 929
Bsp1286I GDGCHC 3 cut(s) 475, 883, 1176
Bsp143I GATC 8 cut(s) 121, 256, 1179, 1247, 1261, 1279, 1288, 1448
Bsp19I CCATGG 2 cut(s) 800, 1155
BspACI CCGC 3 cut(s) 1340, 1483, 1539
BspANI GGCC 2 cut(s) 1140, 1551
BspCNI CTCAG 3 cut(s) 175, 1303, 1390
BspHI TCATGA 1 cut(s) 1222
BspLI GGNNCC 4 cut(s) 734, 889, 1488, 1518
BspPI GGATC 3 cut(s) 1283, 1287, 1456
BspT107I GGYRCC 1 cut(s) 1516
BspTNI GGTCTC 1 cut(s) 929
BsrI ACTGG 2 cut(s) 922, 1141
BssECI CCNNGG 2 cut(s) 800, 1155
BssMI GATC 8 cut(s) 121, 256, 1179, 1247, 1261, 1279, 1288, 1448
BssT1I CCWWGG 2 cut(s) 800, 1155
Bst6I CTCTTC 2 cut(s) 103, 1425
BstAPI GCANNNNNTGC 1 cut(s) 878
BstC8I GCNNGC 2 cut(s) 73, 1273
BstDEI CTNAG 3 cut(s) 162, 1311, 1377
BstDSI CCRYGG 2 cut(s) 800, 1155
BstENI CCTNNNNNAGG 1 cut(s) 1431
BstF5I GGATG 5 cut(s) 10, 292, 511, 1029, 1124
BstKTI GATC 8 cut(s) 124, 259, 1182, 1250, 1264, 1282, 1291, 1451
BstMAI GTCTC 1 cut(s) 929
BstMBI GATC 8 cut(s) 121, 256, 1179, 1247, 1261, 1279, 1288, 1448
BstMWI GCNNNNNNNGC 2 cut(s) 878, 1345
BstSLI GKGCMC 2 cut(s) 883, 1176
BstV1I GCAGC 2 cut(s) 1191, 1381
BstV2I GAAGAC 2 cut(s) 669, 1154
BstX2I RGATCY 1 cut(s) 1288
BstXI CCANNNNNNTGG 1 cut(s) 1156
BstYI RGATCY 1 cut(s) 1288
BsuRI GGCC 2 cut(s) 1140, 1551
BtgI CCRYGG 2 cut(s) 800, 1155
BtrI CACGTC 2 cut(s) 86, 709
BtsCI GGATG 5 cut(s) 10, 292, 511, 1029, 1124
BtsI GCAGTG 1 cut(s) 1235
BtsIMutI CAGTG 1 cut(s) 1235
Cac8I GCNNGC 2 cut(s) 73, 1273
CciI TCATGA 1 cut(s) 1222
Cfr13I GGNCC 2 cut(s) 828, 1138
Csp6I GTAC 5 cut(s) 348, 367, 687, 751, 1327
CspCI CAANNNNNGTGG 2 cut(s) 286, 321
CviAII CATG 8 cut(s) 439, 801, 825, 884, 1156, 1167, 1177, 1223
CviQI GTAC 5 cut(s) 348, 367, 687, 751, 1327
DdeI CTNAG 3 cut(s) 162, 1311, 1377
DpnI GATC 8 cut(s) 123, 258, 1181, 1249, 1263, 1281, 1290, 1450
DpnII GATC 8 cut(s) 121, 256, 1179, 1247, 1261, 1279, 1288, 1448
DraI TTTAAA 2 cut(s) 1042, 1212
EaeI YGGCCR 1 cut(s) 1549
Eam1104I CTCTTC 2 cut(s) 103, 1425
EarI CTCTTC 2 cut(s) 103, 1425
Eco130I CCWWGG 2 cut(s) 800, 1155
Eco24I GRGCYC 1 cut(s) 475
Eco31I GGTCTC 1 cut(s) 929
Eco47I GGWCC 1 cut(s) 828
EcoNI CCTNNNNNAGG 1 cut(s) 1431
EcoT14I CCWWGG 2 cut(s) 800, 1155
EcoT22I ATGCAT 1 cut(s) 599
EcoT38I GRGCYC 1 cut(s) 475
ErhI CCWWGG 2 cut(s) 800, 1155
FaeI CATG 8 cut(s) 442, 804, 828, 887, 1159, 1170, 1180, 1226
FaqI GGGAC 1 cut(s) 719
FatI CATG 8 cut(s) 438, 800, 824, 883, 1155, 1166, 1176, 1222
FauI CCCGC 1 cut(s) 1476
FauNDI CATATG 1 cut(s) 599
FbaI TGATCA 3 cut(s) 256, 1179, 1261
FblI GTMKAC 1 cut(s) 1586
Fnu4HI GCNGC 3 cut(s) 1205, 1340, 1370
FokI GGATG 4 cut(s) 279, 498, 1016, 1111
FriOI GRGCYC 1 cut(s) 475
Fsp4HI GCNGC 3 cut(s) 1205, 1340, 1370
FspBI CTAG 6 cut(s) 128, 182, 867, 1343, 1470, 1595
GluI GCNGC 3 cut(s) 1205, 1340, 1370
HaeIII GGCC 2 cut(s) 1140, 1551
HapII CCGG 2 cut(s) 831, 1442
Hin1II CATG 8 cut(s) 442, 804, 828, 887, 1159, 1170, 1180, 1226
HincII GTYRAC 2 cut(s) 312, 714
HindII GTYRAC 2 cut(s) 312, 714
HindIII AAGCTT 3 cut(s) 726, 1022, 1273
HinfI GANTC 6 cut(s) 64, 178, 274, 580, 1219, 1381
HpaII CCGG 2 cut(s) 831, 1442
HphI GGTGA 1 cut(s) 1060
Hpy166II GTNNAC 6 cut(s) 30, 312, 714, 881, 1174, 1587
Hpy188I TCNGA 4 cut(s) 576, 1218, 1312, 1380
Hpy188III TCNNGA 7 cut(s) 119, 138, 476, 867, 974, 1223, 1283
Hpy8I GTNNAC 6 cut(s) 30, 312, 714, 881, 1174, 1587
Hpy99I CGWCG 1 cut(s) 27
HpyAV CCTTC 5 cut(s) 165, 869, 931, 1500, 1507
HpyCH4IV ACGT 3 cut(s) 85, 708, 716
HpyF10VI GCNNNNNNNGC 2 cut(s) 878, 1345
HpyF3I CTNAG 3 cut(s) 162, 1311, 1377
HpySE526I ACGT 3 cut(s) 85, 708, 716
Hsp92II CATG 8 cut(s) 442, 804, 828, 887, 1159, 1170, 1180, 1226
Ksp22I TGATCA 3 cut(s) 256, 1179, 1261
Kzo9I GATC 8 cut(s) 121, 256, 1179, 1247, 1261, 1279, 1288, 1448
LpnPI CCDG 9 cut(s) 57, 151, 216, 249, 443, 844, 903, 1154, 1455
Lsp1109I GCAGC 2 cut(s) 1191, 1381
LweI GCATC 4 cut(s) 363, 643, 1038, 1400
MaeI CTAG 6 cut(s) 128, 182, 867, 1343, 1470, 1595
MaeII ACGT 3 cut(s) 85, 708, 716
MaeIII GTNAC 2 cut(s) 859, 1083
MalI GATC 8 cut(s) 123, 258, 1181, 1249, 1263, 1281, 1290, 1450
MboI GATC 8 cut(s) 121, 256, 1179, 1247, 1261, 1279, 1288, 1448
MboII GAAGA 8 cut(s) 90, 116, 662, 669, 896, 1154, 1298, 1412
MflI RGATCY 1 cut(s) 1288
MhlI GDGCHC 3 cut(s) 475, 883, 1176
MlsI TGGCCA 1 cut(s) 1551
MluCI AATT 5 cut(s) 90, 744, 978, 1005, 1404
MluNI TGGCCA 1 cut(s) 1551
MlyI GAGTC 4 cut(s) 73, 187, 268, 574
Mox20I TGGCCA 1 cut(s) 1551
Mph1103I ATGCAT 1 cut(s) 599
MscI TGGCCA 1 cut(s) 1551
MseI TTAA 9 cut(s) 548, 645, 720, 893, 1041, 1053, 1211, 1317, 1403
MslI CAYNNNNRTG 1 cut(s) 1129
Msp20I TGGCCA 1 cut(s) 1551
MspI CCGG 2 cut(s) 831, 1442
MwoI GCNNNNNNNGC 2 cut(s) 878, 1345
NcoI CCATGG 2 cut(s) 800, 1155
NdeI CATATG 1 cut(s) 599
NdeII GATC 8 cut(s) 121, 256, 1179, 1247, 1261, 1279, 1288, 1448
NlaIII CATG 8 cut(s) 442, 804, 828, 887, 1159, 1170, 1180, 1226
NlaIV GGNNCC 4 cut(s) 734, 889, 1488, 1518
NsiI ATGCAT 1 cut(s) 599
PagI TCATGA 1 cut(s) 1222
PfeI GAWTC 2 cut(s) 1219, 1381
PkrI GCNGC 3 cut(s) 1206, 1341, 1371
PleI GAGTC 4 cut(s) 72, 186, 268, 574
PpsI GAGTC 4 cut(s) 72, 186, 268, 574
PshBI ATTAAT 1 cut(s) 1053
PsiI TTATAA 2 cut(s) 354, 527
Psp1406I AACGTT 1 cut(s) 716
PspN4I GGNNCC 4 cut(s) 734, 889, 1488, 1518
PspPI GGNCC 2 cut(s) 828, 1138
PsuI RGATCY 1 cut(s) 1288
RsaI GTAC 5 cut(s) 349, 368, 688, 752, 1328
RsaNI GTAC 5 cut(s) 348, 367, 687, 751, 1327
RseI CAYNNNNRTG 1 cut(s) 1129
SaqAI TTAA 9 cut(s) 548, 645, 720, 893, 1041, 1053, 1211, 1317, 1403
SatI GCNGC 3 cut(s) 1205, 1340, 1370
Sau3AI GATC 8 cut(s) 121, 256, 1179, 1247, 1261, 1279, 1288, 1448
Sau96I GGNCC 2 cut(s) 828, 1138
SchI GAGTC 4 cut(s) 73, 187, 268, 574
SduI GDGCHC 3 cut(s) 475, 883, 1176
SfaNI GCATC 4 cut(s) 363, 643, 1038, 1400
SinI GGWCC 1 cut(s) 828
SmiMI CAYNNNNRTG 1 cut(s) 1129
SmlI CTYRAG 1 cut(s) 383
SmoI CTYRAG 1 cut(s) 383
Sse9I AATT 5 cut(s) 90, 744, 978, 1005, 1404
SsiI CCGC 3 cut(s) 1340, 1483, 1539
SspI AATATT 5 cut(s) 619, 946, 1097, 1195, 1546
SspMI CTAG 6 cut(s) 128, 182, 867, 1343, 1470, 1595
StyI CCWWGG 2 cut(s) 800, 1155
TaiI ACGT 3 cut(s) 88, 711, 719
TaqI TCGA 5 cut(s) 106, 194, 401, 1522, 1558
TasI AATT 5 cut(s) 90, 744, 978, 1005, 1404
TatI WGTACW 3 cut(s) 347, 366, 750
TauI GCSGC 1 cut(s) 1342
TfiI GAWTC 2 cut(s) 1219, 1381
Tru1I TTAA 9 cut(s) 548, 645, 720, 893, 1041, 1053, 1211, 1317, 1403
Tru9I TTAA 9 cut(s) 548, 645, 720, 893, 1041, 1053, 1211, 1317, 1403
TscAI CASTG 1 cut(s) 1235
TseI GCWGC 2 cut(s) 1204, 1369
TspDTI ATGAA 7 cut(s) 427, 566, 738, 1113, 1205, 1211, 1482
TspGWI ACGGA 1 cut(s) 917
TspRI CASTG 1 cut(s) 1235
VneI GTGCAC 2 cut(s) 879, 1172
VpaK11BI GGWCC 1 cut(s) 828
VspI ATTAAT 1 cut(s) 1053
XagI CCTNNNNNAGG 1 cut(s) 1431
XapI RAATTY 2 cut(s) 90, 1005
XbaI TCTAGA 1 cut(s) 866
XmiI GTMKAC 1 cut(s) 1586
XspI CTAG 6 cut(s) 128, 182, 867, 1343, 1470, 1595
Zsp2I ATGCAT 1 cut(s) 599
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.