Rorug02G0350400

protein FAR1-RELATED SEQUENCE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0000143
Physical Location & Seq
Forward (+)
44037640 .. 44045293
7654 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0350400.1

Sequence Viewer

Length: 2889 bp
ATGGCCGAAGCACTTGTATCCTTCCTTGTAGAGCAGTTGGGTTCCTTCATCTTCCAACATGTGGAACAAAATGTGAAACTTGTTGTGAATGTCAAAAAAGAAGTAGTACACCTTACCCTCAACCTCAAAACTATTCAAGCTGTGCTGGCAGATGCAGAAAGGAGGCAAGTCAAGGAGGACAGCGTGAGACGCTGGCTCAACAATCTGAAAGAAGTGTCGTACGAGGTAGACGATGTGGTGGACGAGTGGAGCACTGAAATCCTGAAACAACAAATCGAGAACCAAGGTGACAATGCTATTGTACCTAAGAAGAAGGTATGTTTCTCTATTCCCTTCCGTTGTCTTGGTACTGGCCAAGTCACTCAGATAATTTCTCGTCGTGACATTGCTGTGAGGATAAAAGAGTTGAATGAGAAGTTAGCTTTGATTCATGAACAGCAAAAATTTTATAAGTTCCTTCAAAATGAAATAGAATTTGAGCAACCTGAACGATTGAAAAGTTTCTCAATTGTCGATAAATCTGGGACATTTGGTAGAGACTACGAAATGAATAAACTAGTAAGCGAGTTAGTGAGTGAGAATAGTGAAGAAAGGAAGACGCCTCTTGTCAAATCTATTGTAGGTATGGGGGGGATAGGCAAAACAACTCTTGCCCAACTAGCCTATAATGATGAAAAAGTAAAGGCTTGTTTTCATAAAAGAATATGGGTTTGTGTCTCAGAACCCTTTGTACAAATTGCAGTTGCCAAAGCCATCCTTGAGGGTCTTGAAGTAAATGACCCACAGTCAAATGAGTTAGAAACTTATCTCCAACATATATCTAAGTCCATTGAGGGCAAGAAGTTCCTTCTTGTCCTAGATGATGTTTGGGACTCAGACCATAGAAAGTGGGAACCCTTCTTGACAACATTACAGTGTGGTGGCTCAGGGAGTAGAATTTTGGTTACAACGCGAATAACGCAAGTTGCTAGTAAACTGGGAGCAACTAGTGACCACACAATCCATTTGAAGGAGTTGGGTGAAGAAACTTGTCGGTCATTGTTCTATCACATTGCATTTTTTGATGGTGAAAGAAAGGAGTCTAAAAAGTTTGAAGATATTGGTAATGACATCGTGAAAAAGTGCAAAGGCTTGCCTCTTGCTGCTAAGACTTTGGGTAGTCTAATGCGGTGTAAGAAAACACTGCAACAATGGGTAGAGGTTTTGAATAGTAAAATATGGGAATTACAAGAGTTTGAGCAGCAAGTTTTCCAACCGTTATTACTAAGTTACTATGATTTGAAACCATTGTCCAAACGTTGTCTTTTGTATTGTGCTACATTTCCTAAAGATCATGTGATTGTTAAGGATAAGTTGATTGAGTTGTGGATATCACAAGATTATCTTGAAGTCAAAGGAGGAAATAAAGAAAAGACAACAGTAGGTCAATGGTGTTTTGAGAACTTAGTAACGCGGTCTTTCTTTCAAGATATTAAGGAAGATTATGAGGGGAACATTGAAAGTTGTAAAATGCATGACATCGTGCATGACTTTGTGCAATATTTAACCAAGGATGAATGCTTTAGTATGGTGGTTAAGGGTGCTAATGAGAGAACGGAGTTACCGGGTGATGAGGTCCGTCACTTGTCTTTAATGTTTGCACCCGAGGGTCCATTTCCTGTTTCTTCTCTCAACTGTAAGAGTTTGCGCACTCTCACAGCTTTTGAATCGAAACTTACTAGCATTGGCGTTGAGTTGATTTCGCAATCAAAAAGCCTTAGGACTTTGAATTTGAGTAAAAACTCGATTCGAGAAGTTCCAAAGGAGATTGGTGGATTGATACATTTGAGATATCTGGACTTGTCTGAAAACCATGAACTGAAGGAATTGCCCGACAGTTTATGTGATTTATACAATCTGCAAACCTTGCGACTTGTTGAGTGCAGAGAACTAGTCAAATTTCCCGATGAAGAGGCAATGAGAAAGCTAACCAAGTTAAAGCATCTTTATGTCAACAAGTCCCCTCGTCTAAAATCAAAAGGGATAGGGAGGTTAACCGGTCTGCAAAAGCTAGATGTGTTTCATCTAAATGGTGATGAAGGTGCCGACAAAGAAGGGACGTTGAAGTTGCAAGATTTGGAAAACTTGAACCAACTTGAAGGGAGTCTTGAAATTGCACACTTGGAGTCTGTGGAAGATGCGAGTGAGGGTGTAAAGGCATGTTTGAGTGAGAAACATCTCCTTCATCATCTGGCTCTAGATTTCTTATGTGACGATGGATGTAGTAAGTGGTGGAGAGCAATAGGGAGGGGCCAAAATGATAGAGAAATACTGAATGGGCTGCAACCACATGGAGGTTTGGAATCATTGAGCATCGGGAACTGCCAGCTGGCTACTTCTCCGTGTCCCGATTGGCTCTTGTCTTTACATAATCTGACATCTCTTCAGCTTCGGTACTTCCGTAATTGTGAGCTGCTTTCGGGTCCATTTGGGAGATTGCCGTCGCTTGAATCACTTCTATTTTATGAGATGGATAAAGTGAAAAAGGTGGGAGTGGAGTTATTGGGAATTGAAGAAGGAGAATTACAATCATCCTCCTCCTCGTCTTCTCTTATTTTATTCCCCAAATTGAAAAGCCTCGCGTTCATTGGGATGCGTGAGTGGGAAGAGTGGGAAGGAGTGGGAGGGGATTTTCAGAATAATATTACCATAATGCCCTCCCTATCTCGCTTGGACATTGACTCCTGCCCGAAACTTGGTACGCTGCCCGACTTCCTGCGCAAGACACCACTACTACAGAGCGTGACCGTCGTGGCTTCTCGAATTCTGGGTGGTAAAGTCCGGGACAAGAGAAGTAAACAGTGGGCCAAGATTTCTCACGTCCCAGACATCCGAGTGATGGAATTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AFT FAR1 MULE

Protein Analysis

962

Amino Acids

109.45

Weight (kDa)

6.18

Isoelectric Point (pI)

46.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rx_N PF18052 6 - 95 1.1e-22 Rx N-terminal domain
NB-ARC PF00931 180 - 353 1.6e-33 NB-ARC domain
WHD_DRP PF23559 441 - 512 1.2e-21 Disease resistance protein Winged helix domain
LRR_14 PF23598 562 - 906 4.1e-25 Leucine-rich repeat region
LRR_8 PF13855 562 - 618 9.9e-08 Leucine rich repeat
LRR_4 PF12799 584 - 624 9e-06 Leucine Rich repeats (2 copies)
LRR_8 PF13855 585 - 641 5.4e-08 Leucine rich repeat
LRR_R13L1-DRL21 PF25019 703 - 837 1e-23 R13L1/DRL21 LRRs
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000143)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G76710 AT1G76710 AT1G76710 AT1G76710
fragaria_vesca FvH4_1g20063 FvH4_2g15231 FvH4_3g04011 FvH4_3g28681 FvH4_4g01411 FvH4_4g10181 FvH4_4g15922 FvH4_4g16651 FvH4_4g16652 FvH4_5g13892 FvH4_5g13893 FvH4_5g20623 FvH4_5g20623 FvH4_5g20623 FvH4_5g20623 FvH4_5g25511 FvH4_6g12551 FvH4_6g12552 FvH4_6g38841 FvH4_7g04391
malus_domestica MD05G1031300.v1.1 MD05G1031400.v1.1 MD05G1031500.v1.1 MD08G1164400.v1.1 MD10G1032900.v1.1 MD10G1033000.v1.1 MD10G1033100.v1.1
prunus_persica Prupe.3G240700_v2.0.a1 Prupe.7G144600_v2.0.a1 Prupe.8G038500_v2.0.a1 Prupe.8G038500_v2.0.a1
pyrus_communis pycom05g02250 pycom05g02260 pycom05g02270 pycom05g02280 pycom08g14160 pycom10g02100 pycom10g02110 pycom10g02130
rosa_chinensis RchiOBHm_Chr1g0329481 RchiOBHm_Chr1g0329491 RchiOBHm_Chr1g0341531 RchiOBHm_Chr3g0464811 RchiOBHm_Chr3g0494701 RchiOBHm_Chr3g0497501 RchiOBHm_Chr4g0385841 RchiOBHm_Chr5g0061181 RchiOBHm_Chr6g0263001 RchiOBHm_Chr7g0193111 RchiOBHm_Chr7g0206281 RchiOBHm_Chr7g0206311
rosa_laevigata RLG00000018908 RLG00000028528 RLG00000028803 RLG00000029882 RLG00000029883 RLG00000030361
rosa_multiflora Rmu_co8196328.1_g000001 Rmu_co8259135.1_g000001 Rmu_co8269185.1_g000001 Rmu_sc0000076.1_g000019 Rmu_sc0000311.1_g000007 Rmu_sc0000429.1_g000038 Rmu_sc0000429.1_g000039 Rmu_sc0000429.1_g000040 Rmu_sc0000511.1_g000005 Rmu_sc0000539.1_g000054 Rmu_sc0000566.1_g000039 Rmu_sc0000805.1_g000032 Rmu_sc0000870.1_g000073 Rmu_sc0000870.1_g000074 Rmu_sc0001010.1_g000018 Rmu_sc0001083.1_g000013 Rmu_sc0001114.1_g000011 Rmu_sc0001702.1_g000027 Rmu_sc0001779.1_g000012 Rmu_sc0002923.1_g000036 Rmu_sc0003242.1_g000011 Rmu_sc0003291.1_g000036 Rmu_sc0003393.1_g000012 Rmu_sc0003872.1_g000016 Rmu_sc0003872.1_g000017 Rmu_sc0003872.1_g000018 Rmu_sc0004084.1_g000020 Rmu_sc0004386.1_g000005 Rmu_sc0004622.1_g000005 Rmu_sc0004742.1_g000021 Rmu_sc0004755.1_g000020 Rmu_sc0004805.1_g000036 Rmu_sc0005065.1_g000006 Rmu_sc0005177.1_g000004 Rmu_sc0006373.1_g000003 Rmu_sc0006373.1_g000004 Rmu_sc0007121.1_g000002 Rmu_sc0007943.1_g000003 Rmu_sc0010368.1_g000006 Rmu_sc0010543.1_g000001 Rmu_sc0012591.1_g000006 Rmu_sc0013504.1_g000009 Rmu_sc0015025.1_g000001 Rmu_sc0016170.1_g000001 Rmu_sc0017156.1_g000001 Rmu_sc0026439.1_g000001
rosa_roxburghii Rroxscaffold_175G00432280 Rroxscaffold_1G00030190 Rroxscaffold_1G00030880 Rroxscaffold_2G00090520 Rroxscaffold_3G00227940 Rroxscaffold_3G00233400 Rroxscaffold_3G00238500 Rroxscaffold_3G00251650 Rroxscaffold_4G00301570 Rroxscaffold_4G00321040 Rroxscaffold_5G00350880 Rroxscaffold_7G00184400
rosa_rugosa Rorug01G0080800 Rorug01G0080900 Rorug01G0193900 Rorug02G0275900 Rorug02G0275900 Rorug02G0275900 Rorug02G0305400 Rorug02G0311800 Rorug02G0350400 Rorug02G0381300 Rorug03G0136700 Rorug03G0181900 Rorug03G0268000 Rorug04G0301600 Rorug05G0175100 Rorug05G0250700 Rorug05G0298200 Rorug05G0596000 Rorug06G0029500 Rorug07G0094300 Rorug07G0094300 Rorug07G0095400 Rorug07G0140100
rosa_samantha Rh1AG099200 Rh1AG190500 Rh1BG078900 Rh1BG079000 Rh1BG079100 Rh1CG084600 Rh1CG084700 Rh1CG095300 Rh1CG175900 Rh1DG103300 Rh1DG150400 Rh2AG079300 Rh2AG272400 Rh2AG464800 Rh2AG507400 Rh2DG078300 Rh2DG078400 Rh3CG206900 Rh3CG295400 Rh3DG206800 Rh3DG356200 Rh4CG071500 Rh4CG179200 Rh4DG064700 Rh5CG362400 Rh7AG212300 Rh7AG226200 Rh7BG222200
rosa_wichuraiana Rw0G009990 Rw0G011260 Rw0G011270 Rw0G012910 Rw0G013740 Rw1G007740 Rw1G013050 Rw1G014230 Rw2G014270 Rw3G012720 Rw3G028110 Rw4G006630 Rw4G015270 Rw4G016160 Rw4G031380 Rw5G011440 Rw5G029180 Rw5G048360 Rw5G048430 Rw5G048780 Rw6G005250 Rw6G006390 Rw7G002840 Rw7G014080 Rw7G019650 Rw7G032790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 450
Acc16I TGCGCA 2 cut(s) 1688, 2759
AccB1I GGYRCC 1 cut(s) 2081
AccB7I CCANNNNNTGG 1 cut(s) 61
AccI GTMKAC 1 cut(s) 228
AccII CGCG 3 cut(s) 952, 1453, 2621
AciI CCGC 2 cut(s) 1168, 1453
AclI AACGTT 1 cut(s) 1297
AcoI YGGCCR 2 cut(s) 3, 352
AcsI RAATTY 7 cut(s) 443, 473, 936, 1768, 1937, 2802, 2882
AcuI CTGAAG 2 cut(s) 1880, 2408
AcyI GRCGYC 1 cut(s) 599
AfaI GTAC 7 cut(s) 108, 221, 303, 349, 732, 2435, 2740
AfiI CCNNNNNNNGG 5 cut(s) 61, 1009, 2333, 2735, 2878
AflIII ACRYGT 1 cut(s) 58
AgeI ACCGGT 1 cut(s) 2036
AhdI GACNNNNNGTC 1 cut(s) 784
AhlI ACTAGT 3 cut(s) 556, 986, 1930
AjiI CACGTC 1 cut(s) 2860
AluBI AGCT 8 cut(s) 140, 422, 1700, 1966, 2050, 2368, 2428, 2452
AluI AGCT 8 cut(s) 140, 422, 1700, 1966, 2050, 2368, 2428, 2452
Alw21I GWGCWC 1 cut(s) 254
Alw26I GTCTC 3 cut(s) 181, 531, 721
Ama87I CYCGRG 1 cut(s) 1643
AoxI GGCC 4 cut(s) 3, 352, 2290, 2844
ApeKI GCWGC 5 cut(s) 1142, 1240, 2320, 2452, 2743
ApoI RAATTY 7 cut(s) 443, 473, 936, 1768, 1937, 2802, 2882
ArsI GACNNNNNNTTYG 2 cut(s) 1753, 1785
AsiGI ACCGGT 1 cut(s) 2036
Asp700I GAANNNNTTC 2 cut(s) 500, 2493
AspLEI GCGC 2 cut(s) 1689, 2760
AspS9I GGNCC 5 cut(s) 1615, 1649, 2290, 2462, 2844
AsuC2I CCSGG 2 cut(s) 1605, 2822
AsuHPI GGTGA 5 cut(s) 299, 1031, 1079, 1619, 2084
AvaI CYCGRG 1 cut(s) 1643
AvaII GGWCC 3 cut(s) 1615, 1649, 2462
AxyI CCTNAGG 1 cut(s) 1757
BaeI ACNNNNGTAYC 2 cut(s) 2425, 2458
BalI TGGCCA 1 cut(s) 354
BanI GGYRCC 1 cut(s) 2081
BarI GAAGNNNNNNTAC 2 cut(s) 2547, 2579
BbsI GAAGAC 2 cut(s) 602, 2577
Bbv12I GWGCWC 1 cut(s) 254
BbvI GCAGC 5 cut(s) 1129, 1252, 2307, 2439, 2730
BccI CCATC 5 cut(s) 761, 1058, 2249, 2503, 2872
BceAI ACGGC 1 cut(s) 2464
BciVI GTATCC 1 cut(s) 28
BcnI CCSGG 2 cut(s) 1605, 2822
BcoDI GTCTC 3 cut(s) 181, 531, 721
BcuI ACTAGT 3 cut(s) 556, 986, 1930
BfaI CTAG 9 cut(s) 557, 659, 857, 969, 987, 1719, 1931, 2051, 2237
BfmI CTRYAG 1 cut(s) 2774
BfuI GTATCC 1 cut(s) 28
BisI GCNGC 5 cut(s) 1143, 1241, 2321, 2453, 2744
BlsI GCNGC 5 cut(s) 1144, 1242, 2322, 2454, 2745
Bme1390I CCNGG 2 cut(s) 1605, 2822
Bme18I GGWCC 3 cut(s) 1615, 1649, 2462
BmeRI GACNNNNNGTC 1 cut(s) 784
BmeT110I CYCGRG 1 cut(s) 1643
BmgBI CACGTC 1 cut(s) 2860
BmgT120I GGNCC 5 cut(s) 1615, 1649, 2290, 2462, 2844
BmiI GGNNCC 6 cut(s) 43, 894, 1650, 2083, 2291, 2463
BmrFI CCNGG 2 cut(s) 1605, 2822
BmrI ACTGGG 1 cut(s) 986
BmsI GCATC 5 cut(s) 142, 1990, 2167, 2361, 2622
BmuI ACTGGG 1 cut(s) 986
BpiI GAAGAC 2 cut(s) 602, 2577
Bpu10I CCTNAGC 1 cut(s) 925
BpuEI CTTGAG 1 cut(s) 779
BpuMI CCSGG 2 cut(s) 1605, 2822
BsaHI GRCGYC 1 cut(s) 599
BsaJI CCNNGG 3 cut(s) 283, 1548, 1644
BsaWI WCCGGW 1 cut(s) 2036
BsaXI ACNNNNNCTCC 2 cut(s) 2705, 2735
Bsc4I CCNNNNNNNGG 5 cut(s) 61, 1009, 2333, 2735, 2878
Bse118I RCCGGY 1 cut(s) 2036
Bse1I ACTGG 2 cut(s) 355, 981
Bse21I CCTNAGG 1 cut(s) 1757
Bse3DI GCAATG 3 cut(s) 384, 1050, 1962
BseDI CCNNGG 3 cut(s) 283, 1548, 1644
BseGI GGATG 6 cut(s) 753, 1558, 2264, 2570, 2637, 2868
BseLI CCNNNNNNNGG 5 cut(s) 61, 1009, 2333, 2735, 2878
BseMI GCAATG 3 cut(s) 384, 1050, 1962
BseMII CTCAG 4 cut(s) 377, 732, 888, 939
BseNI ACTGG 2 cut(s) 355, 981
BseRI GAGGAG 2 cut(s) 2566, 2569
BseXI GCAGC 5 cut(s) 1129, 1252, 2307, 2439, 2730
BsgI GTGCAG 1 cut(s) 1942
Bsh1236I CGCG 3 cut(s) 952, 1453, 2621
BshFI GGCC 4 cut(s) 5, 354, 2292, 2846
BshNI GGYRCC 1 cut(s) 2081
BshTI ACCGGT 1 cut(s) 2036
BsiHKAI GWGCWC 1 cut(s) 254
BsiHKCI CYCGRG 1 cut(s) 1643
BsiSI CCGG 3 cut(s) 1604, 2037, 2821
BsiWI CGTACG 1 cut(s) 219
BslFI GGGAC 7 cut(s) 538, 884, 1984, 2110, 2370, 2837, 2846
BslI CCNNNNNNNGG 5 cut(s) 61, 1009, 2333, 2735, 2878
BsmAI GTCTC 3 cut(s) 181, 531, 721
BsmBI CGTCTC 1 cut(s) 181
BsmFI GGGAC 7 cut(s) 538, 884, 1984, 2110, 2370, 2837, 2846
BsmI GAATGC 1 cut(s) 1562
BsnI GGCC 4 cut(s) 5, 354, 2292, 2846
BsoBI CYCGRG 1 cut(s) 1643
Bsp1286I GDGCHC 1 cut(s) 254
Bsp1407I TGTACA 1 cut(s) 730
Bsp143I GATC 1 cut(s) 1330
BspACI CCGC 2 cut(s) 1168, 1453
BspANI GGCC 4 cut(s) 5, 354, 2292, 2846
BspCNI CTCAG 4 cut(s) 376, 731, 887, 938
BspFNI CGCG 3 cut(s) 952, 1453, 2621
BspHI TCATGA 1 cut(s) 430
BspLI GGNNCC 6 cut(s) 43, 894, 1650, 2083, 2291, 2463
BspT107I GGYRCC 1 cut(s) 2081
BsrDI GCAATG 3 cut(s) 384, 1050, 1962
BsrFI RCCGGY 1 cut(s) 2036
BsrGI TGTACA 1 cut(s) 730
BsrI ACTGG 2 cut(s) 355, 981
BssAI RCCGGY 1 cut(s) 2036
BssECI CCNNGG 3 cut(s) 283, 1548, 1644
BssMI GATC 1 cut(s) 1330
BssNI GRCGYC 1 cut(s) 599
BssT1I CCWWGG 2 cut(s) 283, 1548
Bst4CI ACNGT 8 cut(s) 786, 915, 1257, 1420, 1676, 1877, 2788, 2841
Bst6I CTCTTC 3 cut(s) 1944, 2427, 2640
BstACI GRCGYC 1 cut(s) 599
BstAPI GCANNNNNTGC 1 cut(s) 1906
BstAUI TGTACA 1 cut(s) 730
BstC8I GCNNGC 5 cut(s) 147, 194, 1133, 2366, 2370
BstF5I GGATG 6 cut(s) 753, 1558, 2264, 2570, 2637, 2868
BstFNI CGCG 3 cut(s) 952, 1453, 2621
BstHHI GCGC 2 cut(s) 1689, 2760
BstKTI GATC 1 cut(s) 1333
BstMAI GTCTC 3 cut(s) 181, 531, 721
BstMBI GATC 1 cut(s) 1330
BstMWI GCNNNNNNNGC 5 cut(s) 146, 189, 659, 958, 1906
BstNSI RCATGY 2 cut(s) 62, 2202
BstSCI CCNGG 2 cut(s) 1603, 2820
BstSFI CTRYAG 1 cut(s) 2774
BstUI CGCG 3 cut(s) 952, 1453, 2621
BstV1I GCAGC 5 cut(s) 1129, 1252, 2307, 2439, 2730
BstV2I GAAGAC 2 cut(s) 602, 2577
Bsu36I CCTNAGG 1 cut(s) 1757
BsuI GTATCC 1 cut(s) 28
BsuRI GGCC 4 cut(s) 5, 354, 2292, 2846
BtrI CACGTC 1 cut(s) 2860
BtsCI GGATG 6 cut(s) 753, 1558, 2264, 2570, 2637, 2868
BtsI GCAGTG 1 cut(s) 1181
BtsIMutI CAGTG 4 cut(s) 252, 920, 1181, 2846
Cac8I GCNNGC 5 cut(s) 147, 194, 1133, 2366, 2370
CciI TCATGA 1 cut(s) 430
CfoI GCGC 2 cut(s) 1689, 2760
Cfr10I RCCGGY 1 cut(s) 2036
Cfr13I GGNCC 5 cut(s) 1615, 1649, 2290, 2462, 2844
CseI GACGC 2 cut(s) 198, 607
Csp6I GTAC 7 cut(s) 107, 220, 302, 348, 731, 2434, 2739
CspAI ACCGGT 1 cut(s) 2036
CviAII CATG 8 cut(s) 59, 431, 1334, 1514, 1526, 1853, 2199, 2330
CviQI GTAC 7 cut(s) 107, 220, 302, 348, 731, 2434, 2739
DpnI GATC 1 cut(s) 1332
DpnII GATC 1 cut(s) 1330
DriI GACNNNNNGTC 1 cut(s) 784
EaeI YGGCCR 2 cut(s) 3, 352
Eam1104I CTCTTC 3 cut(s) 1944, 2427, 2640
Eam1105I GACNNNNNGTC 1 cut(s) 784
EarI CTCTTC 3 cut(s) 1944, 2427, 2640
Eco130I CCWWGG 2 cut(s) 283, 1548
Eco32I GATATC 2 cut(s) 1371, 1832
Eco47I GGWCC 3 cut(s) 1615, 1649, 2462
Eco57I CTGAAG 2 cut(s) 1880, 2408
Eco81I CCTNAGG 1 cut(s) 1757
Eco88I CYCGRG 1 cut(s) 1643
EcoRI GAATTC 2 cut(s) 2802, 2882
EcoRV GATATC 2 cut(s) 1371, 1832
EcoT14I CCWWGG 2 cut(s) 283, 1548
EcoT22I ATGCAT 1 cut(s) 1515
ErhI CCWWGG 2 cut(s) 283, 1548
Esp3I CGTCTC 1 cut(s) 181
FaeI CATG 8 cut(s) 62, 434, 1337, 1517, 1529, 1856, 2202, 2333
FalI AAGNNNNNCTT 6 cut(s) 741, 773, 1368, 1400, 2130, 2162
FaqI GGGAC 7 cut(s) 538, 884, 1984, 2110, 2370, 2837, 2846
FatI CATG 8 cut(s) 58, 430, 1333, 1513, 1525, 1852, 2198, 2329
FblI GTMKAC 1 cut(s) 228
Fnu4HI GCNGC 5 cut(s) 1143, 1241, 2321, 2453, 2744
FokI GGATG 6 cut(s) 740, 1565, 2271, 2557, 2644, 2855
Fsp4HI GCNGC 5 cut(s) 1143, 1241, 2321, 2453, 2744
FspBI CTAG 9 cut(s) 557, 659, 857, 969, 987, 1719, 1931, 2051, 2237
FspI TGCGCA 2 cut(s) 1688, 2759
GlaI GCGC 2 cut(s) 1688, 2759
GluI GCNGC 5 cut(s) 1143, 1241, 2321, 2453, 2744
HaeIII GGCC 4 cut(s) 5, 354, 2292, 2846
HapII CCGG 3 cut(s) 1604, 2037, 2821
HgaI GACGC 2 cut(s) 198, 607
HhaI GCGC 2 cut(s) 1689, 2760
Hin1I GRCGYC 1 cut(s) 599
Hin1II CATG 8 cut(s) 62, 434, 1337, 1517, 1529, 1856, 2202, 2333
Hin6I GCGC 2 cut(s) 1687, 2758
HinP1I GCGC 2 cut(s) 1687, 2758
HincII GTYRAC 2 cut(s) 1993, 2034
HindII GTYRAC 2 cut(s) 1993, 2034
HpaI GTTAAC 1 cut(s) 2034
HpaII CCGG 3 cut(s) 1604, 2037, 2821
HphI GGTGA 5 cut(s) 299, 1031, 1079, 1619, 2084
Hpy166II GTNNAC 7 cut(s) 109, 229, 241, 974, 1993, 2034, 2837
Hpy188I TCNGA 9 cut(s) 207, 366, 721, 877, 1846, 2415, 2676, 2873, 2888
Hpy8I GTNNAC 7 cut(s) 109, 229, 241, 974, 1993, 2034, 2837
Hpy99I CGWCG 3 cut(s) 381, 2485, 2792
HpyCH4III ACNGT 8 cut(s) 786, 915, 1257, 1420, 1676, 1877, 2788, 2841
HpyCH4IV ACGT 3 cut(s) 1297, 2099, 2859
HpyF10VI GCNNNNNNNGC 5 cut(s) 146, 189, 659, 958, 1906
HpySE526I ACGT 3 cut(s) 1297, 2099, 2859
Hsp92I GRCGYC 1 cut(s) 599
Hsp92II CATG 8 cut(s) 62, 434, 1337, 1517, 1529, 1856, 2202, 2333
HspAI GCGC 2 cut(s) 1687, 2758
KspAI GTTAAC 1 cut(s) 2034
Kzo9I GATC 1 cut(s) 1330
LmnI GCTCC 2 cut(s) 249, 980
Lsp1109I GCAGC 5 cut(s) 1129, 1252, 2307, 2439, 2730
LweI GCATC 5 cut(s) 142, 1990, 2167, 2361, 2622
MaeI CTAG 9 cut(s) 557, 659, 857, 969, 987, 1719, 1931, 2051, 2237
MaeII ACGT 3 cut(s) 1297, 2099, 2859
MalI GATC 1 cut(s) 1332
MboI GATC 1 cut(s) 1330
MfeI CAATTG 1 cut(s) 507
MhlI GDGCHC 1 cut(s) 254
MlsI TGGCCA 1 cut(s) 354
MluNI TGGCCA 1 cut(s) 354
MlyI GAGTC 5 cut(s) 866, 1088, 2152, 2174, 2714
MmeI TCCRAC 3 cut(s) 79, 835, 1276
Mox20I TGGCCA 1 cut(s) 354
Mph1103I ATGCAT 1 cut(s) 1515
MroXI GAANNNNTTC 2 cut(s) 500, 2493
MscI TGGCCA 1 cut(s) 354
MseI TTAA 7 cut(s) 1344, 1473, 1544, 1575, 1631, 1976, 2033
MslI CAYNNNNRTG 6 cut(s) 389, 913, 1986, 2067, 2630, 2873
Msp20I TGGCCA 1 cut(s) 354
MspA1I CMGCKG 1 cut(s) 2368
MspI CCGG 3 cut(s) 1604, 2037, 2821
MspR9I CCNGG 2 cut(s) 1605, 2822
MunI CAATTG 1 cut(s) 507
Mva1269I GAATGC 1 cut(s) 1562
MvnI CGCG 3 cut(s) 952, 1453, 2621
MwoI GCNNNNNNNGC 5 cut(s) 146, 189, 659, 958, 1906
NciI CCSGG 2 cut(s) 1605, 2822
NdeII GATC 1 cut(s) 1330
NlaIII CATG 8 cut(s) 62, 434, 1337, 1517, 1529, 1856, 2202, 2333
NlaIV GGNNCC 6 cut(s) 43, 894, 1650, 2083, 2291, 2463
NmuCI GTSAC 7 cut(s) 287, 358, 380, 989, 1619, 2249, 2782
NsbI TGCGCA 2 cut(s) 1688, 2759
NsiI ATGCAT 1 cut(s) 1515
NspI RCATGY 2 cut(s) 62, 2202
PagI TCATGA 1 cut(s) 430
PciI ACATGT 1 cut(s) 58
PcsI WCGNNNNNNNCGW 2 cut(s) 228, 2437
PctI GAATGC 1 cut(s) 1562
PdmI GAANNNNTTC 2 cut(s) 500, 2493
PfeI GAWTC 5 cut(s) 427, 1706, 1786, 2342, 2489
Pfl23II CGTACG 1 cut(s) 219
PflMI CCANNNNNTGG 1 cut(s) 61
PfoI TCCNGGA 1 cut(s) 2820
PinAI ACCGGT 1 cut(s) 2036
PkrI GCNGC 5 cut(s) 1144, 1242, 2322, 2454, 2745
PleI GAGTC 5 cut(s) 866, 1087, 2151, 2173, 2714
PpsI GAGTC 5 cut(s) 866, 1087, 2151, 2173, 2714
PscI ACATGT 1 cut(s) 58
PsiI TTATAA 1 cut(s) 450
Psp1406I AACGTT 1 cut(s) 1297
PspLI CGTACG 1 cut(s) 219
PspN4I GGNNCC 6 cut(s) 43, 894, 1650, 2083, 2291, 2463
PspPI GGNCC 5 cut(s) 1615, 1649, 2290, 2462, 2844
PsrI GAACNNNNNNTAC 2 cut(s) 714, 746
PvuII CAGCTG 1 cut(s) 2368
RsaI GTAC 7 cut(s) 108, 221, 303, 349, 732, 2435, 2740
RsaNI GTAC 7 cut(s) 107, 220, 302, 348, 731, 2434, 2739
RseI CAYNNNNRTG 6 cut(s) 389, 913, 1986, 2067, 2630, 2873
SaqAI TTAA 7 cut(s) 1344, 1473, 1544, 1575, 1631, 1976, 2033
SatI GCNGC 5 cut(s) 1143, 1241, 2321, 2453, 2744
Sau3AI GATC 1 cut(s) 1330
Sau96I GGNCC 5 cut(s) 1615, 1649, 2290, 2462, 2844
SchI GAGTC 5 cut(s) 866, 1088, 2152, 2174, 2714
ScrFI CCNGG 2 cut(s) 1605, 2822
SduI GDGCHC 1 cut(s) 254
SfaNI GCATC 5 cut(s) 142, 1990, 2167, 2361, 2622
SfcI CTRYAG 1 cut(s) 2774
SinI GGWCC 3 cut(s) 1615, 1649, 2462
SmiMI CAYNNNNRTG 6 cut(s) 389, 913, 1986, 2067, 2630, 2873
SmlI CTYRAG 1 cut(s) 758
SmoI CTYRAG 1 cut(s) 758
SpeI ACTAGT 3 cut(s) 556, 986, 1930
SsiI CCGC 2 cut(s) 1168, 1453
SspI AATATT 2 cut(s) 1541, 2683
SspMI CTAG 9 cut(s) 557, 659, 857, 969, 987, 1719, 1931, 2051, 2237
StyD4I CCNGG 2 cut(s) 1603, 2820
StyI CCWWGG 2 cut(s) 283, 1548
TaaI ACNGT 8 cut(s) 786, 915, 1257, 1420, 1676, 1877, 2788, 2841
TaiI ACGT 3 cut(s) 1300, 2102, 2862
TaqI TCGA 6 cut(s) 276, 513, 1709, 1784, 1789, 2800
TaqII GACCGA 1 cut(s) 1023
TatI WGTACW 2 cut(s) 106, 730
TfiI GAWTC 5 cut(s) 427, 1706, 1786, 2342, 2489
Tru1I TTAA 7 cut(s) 1344, 1473, 1544, 1575, 1631, 1976, 2033
Tru9I TTAA 7 cut(s) 1344, 1473, 1544, 1575, 1631, 1976, 2033
TscAI CASTG 4 cut(s) 259, 920, 1188, 2846
TseFI GTSAC 7 cut(s) 287, 358, 380, 989, 1619, 2249, 2782
TseI GCWGC 5 cut(s) 1142, 1240, 2320, 2452, 2743
Tsp45I GTSAC 7 cut(s) 287, 358, 380, 989, 1619, 2249, 2782
TspGWI ACGGA 5 cut(s) 326, 1607, 1610, 2370, 2429
TspRI CASTG 4 cut(s) 259, 920, 1188, 2846
Van91I CCANNNNNTGG 1 cut(s) 61
VpaK11BI GGWCC 3 cut(s) 1615, 1649, 2462
XapI RAATTY 7 cut(s) 443, 473, 936, 1768, 1937, 2802, 2882
XbaI TCTAGA 1 cut(s) 2236
XceI RCATGY 2 cut(s) 62, 2202
XmiI GTMKAC 1 cut(s) 228
XmnI GAANNNNTTC 2 cut(s) 500, 2493
XspI CTAG 9 cut(s) 557, 659, 857, 969, 987, 1719, 1931, 2051, 2237
Zsp2I ATGCAT 1 cut(s) 1515
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.