Rw3G012720

protein FAR1-RELATED SEQUENCE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
OG0000143
Physical Location & Seq
Reverse (-)
12532004 .. 12534689
2686 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G012720.1

Sequence Viewer

Length: 2256 bp
ATGTCTAAGCGTTTAATGAGACCCAAGGATATATTGACTTCCATAAAGAGCCGAGATCCAAGTAATACATCAACGATGAGAACTATATACAATGCTAGGTATTTTGCTCGGATTATCGCTAGAGCAGGCAGAACTCAAATGCAACAATTACTAAAGAATTTGCGCGATCATCATTATATTGAGCATCATAGAAGCGAAGATCACGTGGTCACTGATTTGTTTTGGTGTCATCCATTCAGTCTTCAAATGCTACGTACATTCCCACATGTTCTTATCATGGATTGCACCTATAAGACAAACAAGTATCGTTTTCCACTTTTTGAGATTGTGGGTATTACATGCACTGAGCAAACTTTCAACGTTGCGTTTGTTTACATGTCAAAGGAGGCAGAAGATAATTACAGATGGGCACTGAGTAGGTTAAGAACACTTATGGATGAGGATTCTATGCCTGGGGTAATTGTCACTGATCGAGAATTAGCACTTATGAAAGCCACTGAAAATGTCTTTCCCGATACTCATCAGATTTTATGTAAGTGGCACATTGGTAAGAATGTGATGAGAAAATGCAAAGGAAAATTCACAACAAAAGAAGGGTGGGAAGCATTTAATAATGATTGGCATAGCTTGGTGGATTGTAGCACTGAGGACGAGTATGTACATAGCCTTACAGCTTTTGAATCAAAATACTTTGCATTTCCTGAGGAGATAAATTATTTGAAGACCAATTGGTTGAACAAGTATAAGGAAATGTTCATTGCAGCATGGACAAACAACTACATGCATCTTGGTGCAAAGACTTCGAATCGGGCCGAGAGTGCACATGCAAAGCTCAAGCGAGAACTTAGATCTTCCCAACTTGACTTCAATGTATCATGGGAGCACATCCACTCATTATTGTGTTTACATCATACTGAAGTTAAGGCTTCATTTGAAAAAAGTCGATGTTTTGTGCAACATGAGTTTAAGCATGCATACTTGAGAGAGTTGATAGGATTTGTGTCCATTGCGGCATTGAACAAGATCATCTATGAAGCGAACAAGGCTGATGATATTACATCGGAACTTGCATCATGTAATTGTGCCATACGTAAAACACATGGGTTACCATGTGCGCATGAGATAGCTGAATATAAGCATTGTGACAGTCCCATACCAATTACATATGTGCACGAAAAGGTTCCTTTAAAAGAACAATTAGAACGATTGGCAGAATGGGCTGAAGAACAAAATGAGGATACAAGACGTCAAATCTTAGTGAAGATTGATGAGCTGATAAATCCGACCTCTACTTTACTTAGGGAGCCTGCTGAAAAGAGAAAGACCAAAGGGCGTCCAAGTAAGGAAGACAGTGGCACTCGTCGTTTGCCATCCGGGTTTGAAATTATAAAAACATTGTTGTCTGAGCGTGAGACCCATTCGCCTCTTCCAAGTGTTCAAAAAGTCTCACGTAAGTCAAATACGAAGACAAGTAATGACCACTCAGAGAAAAGTACGGAAGATAAGCTGGCTCAGAAGGATATGAGGTTTGAGCTAACTCAGAAGTATACAACACAGTTCATATTTGGCATGCGGCCATATATTATCGGTTCGATGGATGTCGAAAATGATGGTAATTGTGGTTTTAGAGTTGTGGCATCGGCTTTGGGATTTGGTAGAAAACATTGGCGTAAAGTGCGAATTGATTTGCTAAATGAGCTAAAAGGCACGCCTGAGCTTTACGAAGCTCTTTATGGAGGACAAAGTGCTGTGGACAAACTTTGTAAACGAATTAACCATTCTGCGTCCAATATTGCACCTAAAAGGAAATGGATGGATCTACCAGACATGGGGCATTTGATTGCAACTTGTTATGGAGTAGTGGTTGTCAACTTATCAGATGGTCAGTGCTTCACATTTCTCCCATTACGTGAATACAGCGAGGGAAAACCAATGGAAGCAAATTTACGTGAGATTGGCCTTGGATTTGTGAACAACGATCATTTTGTTCAGATATGTTTATTGCCTGGGCACCCATTGCCACCGGTTACACCAAATTGGATTTACCATGCAGATGATAAAGCTAAAAGTTTGTACTTGAAATATCAAGACCGTTTCCAACAATATGATCAATTGCCACATCCTGAAAGAATGACTAATATATCCTCAGAAACAGTGCAACTTGACGATGACAATGAACTTACTGATGAAATTGTTCAACTTGGTGATGCCACTATATCTAGCAAAGAAGAAACAATGCATCTTGGTGATGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AFT FAR1 MULE

Protein Analysis

751

Amino Acids

87.04

Weight (kDa)

7.05

Isoelectric Point (pI)

42.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ZSWIM1-3_RNaseH-like PF21056 66 - 175 6.2e-12 Zinc finger SWIM domain-containing protein 1/3, RNaseH-like domain
MULE PF10551 90 - 185 3.8e-27 MULE transposase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000143)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G76710 AT1G76710 AT1G76710 AT1G76710
fragaria_vesca FvH4_1g20063 FvH4_2g15231 FvH4_3g04011 FvH4_3g28681 FvH4_4g01411 FvH4_4g10181 FvH4_4g15922 FvH4_4g16651 FvH4_4g16652 FvH4_5g13892 FvH4_5g13893 FvH4_5g20623 FvH4_5g20623 FvH4_5g20623 FvH4_5g20623 FvH4_5g25511 FvH4_6g12551 FvH4_6g12552 FvH4_6g38841 FvH4_7g04391
malus_domestica MD05G1031300.v1.1 MD05G1031400.v1.1 MD05G1031500.v1.1 MD08G1164400.v1.1 MD10G1032900.v1.1 MD10G1033000.v1.1 MD10G1033100.v1.1
prunus_persica Prupe.3G240700_v2.0.a1 Prupe.7G144600_v2.0.a1 Prupe.8G038500_v2.0.a1 Prupe.8G038500_v2.0.a1
pyrus_communis pycom05g02250 pycom05g02260 pycom05g02270 pycom05g02280 pycom08g14160 pycom10g02100 pycom10g02110 pycom10g02130
rosa_chinensis RchiOBHm_Chr1g0329481 RchiOBHm_Chr1g0329491 RchiOBHm_Chr1g0341531 RchiOBHm_Chr3g0464811 RchiOBHm_Chr3g0494701 RchiOBHm_Chr3g0497501 RchiOBHm_Chr4g0385841 RchiOBHm_Chr5g0061181 RchiOBHm_Chr6g0263001 RchiOBHm_Chr7g0193111 RchiOBHm_Chr7g0206281 RchiOBHm_Chr7g0206311
rosa_laevigata RLG00000018908 RLG00000028528 RLG00000028803 RLG00000029882 RLG00000029883 RLG00000030361
rosa_multiflora Rmu_co8196328.1_g000001 Rmu_co8259135.1_g000001 Rmu_co8269185.1_g000001 Rmu_sc0000076.1_g000019 Rmu_sc0000311.1_g000007 Rmu_sc0000429.1_g000038 Rmu_sc0000429.1_g000039 Rmu_sc0000429.1_g000040 Rmu_sc0000511.1_g000005 Rmu_sc0000539.1_g000054 Rmu_sc0000566.1_g000039 Rmu_sc0000805.1_g000032 Rmu_sc0000870.1_g000073 Rmu_sc0000870.1_g000074 Rmu_sc0001010.1_g000018 Rmu_sc0001083.1_g000013 Rmu_sc0001114.1_g000011 Rmu_sc0001702.1_g000027 Rmu_sc0001779.1_g000012 Rmu_sc0002923.1_g000036 Rmu_sc0003242.1_g000011 Rmu_sc0003291.1_g000036 Rmu_sc0003393.1_g000012 Rmu_sc0003872.1_g000016 Rmu_sc0003872.1_g000017 Rmu_sc0003872.1_g000018 Rmu_sc0004084.1_g000020 Rmu_sc0004386.1_g000005 Rmu_sc0004622.1_g000005 Rmu_sc0004742.1_g000021 Rmu_sc0004755.1_g000020 Rmu_sc0004805.1_g000036 Rmu_sc0005065.1_g000006 Rmu_sc0005177.1_g000004 Rmu_sc0006373.1_g000003 Rmu_sc0006373.1_g000004 Rmu_sc0007121.1_g000002 Rmu_sc0007943.1_g000003 Rmu_sc0010368.1_g000006 Rmu_sc0010543.1_g000001 Rmu_sc0012591.1_g000006 Rmu_sc0013504.1_g000009 Rmu_sc0015025.1_g000001 Rmu_sc0016170.1_g000001 Rmu_sc0017156.1_g000001 Rmu_sc0026439.1_g000001
rosa_roxburghii Rroxscaffold_175G00432280 Rroxscaffold_1G00030190 Rroxscaffold_1G00030880 Rroxscaffold_2G00090520 Rroxscaffold_3G00227940 Rroxscaffold_3G00233400 Rroxscaffold_3G00238500 Rroxscaffold_3G00251650 Rroxscaffold_4G00301570 Rroxscaffold_4G00321040 Rroxscaffold_5G00350880 Rroxscaffold_7G00184400
rosa_rugosa Rorug01G0080800 Rorug01G0080900 Rorug01G0193900 Rorug02G0275900 Rorug02G0275900 Rorug02G0275900 Rorug02G0305400 Rorug02G0311800 Rorug02G0350400 Rorug02G0381300 Rorug03G0136700 Rorug03G0181900 Rorug03G0268000 Rorug04G0301600 Rorug05G0175100 Rorug05G0250700 Rorug05G0298200 Rorug05G0596000 Rorug06G0029500 Rorug07G0094300 Rorug07G0094300 Rorug07G0095400 Rorug07G0140100
rosa_samantha Rh1AG099200 Rh1AG190500 Rh1BG078900 Rh1BG079000 Rh1BG079100 Rh1CG084600 Rh1CG084700 Rh1CG095300 Rh1CG175900 Rh1DG103300 Rh1DG150400 Rh2AG079300 Rh2AG272400 Rh2AG464800 Rh2AG507400 Rh2DG078300 Rh2DG078400 Rh3CG206900 Rh3CG295400 Rh3DG206800 Rh3DG356200 Rh4CG071500 Rh4CG179200 Rh4DG064700 Rh5CG362400 Rh7AG212300 Rh7AG226200 Rh7BG222200
rosa_wichuraiana Rw0G009990 Rw0G011260 Rw0G011270 Rw0G012910 Rw0G013740 Rw1G007740 Rw1G013050 Rw1G014230 Rw2G014270 Rw3G012720 Rw3G028110 Rw4G006630 Rw4G015270 Rw4G016160 Rw4G031380 Rw5G011440 Rw5G029180 Rw5G048360 Rw5G048430 Rw5G048780 Rw6G005250 Rw6G006390 Rw7G002840 Rw7G014080 Rw7G019650 Rw7G032790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1388
AatII GACGTC 1 cut(s) 1249
Acc16I TGCGCA 1 cut(s) 1116
AccB1I GGYRCC 1 cut(s) 2010
AccI GTMKAC 1 cut(s) 1547
AccII CGCG 1 cut(s) 165
AciI CCGC 2 cut(s) 1010, 1573
AclI AACGTT 1 cut(s) 360
AclWI GGATC 2 cut(s) 50, 1824
AcoI YGGCCR 1 cut(s) 1574
AcsI RAATTY 3 cut(s) 157, 578, 1942
AcuI CTGAAG 2 cut(s) 936, 1242
AcvI CACGTG 1 cut(s) 205
AcyI GRCGYC 2 cut(s) 1246, 1333
AfaI GTAC 4 cut(s) 256, 660, 1495, 2075
AfiI CCNNNNNNNGG 1 cut(s) 1829
AflIII ACRYGT 2 cut(s) 265, 375
AgeI ACCGGT 1 cut(s) 2023
AjnI CCWGG 2 cut(s) 451, 2005
Alw21I GWGCWC 3 cut(s) 823, 885, 1173
Alw26I GTCTC 3 cut(s) 13, 1406, 1450
Alw44I GTGCAC 2 cut(s) 819, 1169
AlwI GGATC 2 cut(s) 50, 1824
AoxI GGCC 3 cut(s) 810, 1574, 1957
ApaLI GTGCAC 2 cut(s) 819, 1169
ApeKI GCWGC 1 cut(s) 761
ApoI RAATTY 3 cut(s) 157, 578, 1942
AsiGI ACCGGT 1 cut(s) 2023
Asp700I GAANNNNTTC 2 cut(s) 1179, 2193
AspLEI GCGC 2 cut(s) 165, 1117
AspS9I GGNCC 1 cut(s) 810
AsuC2I CCSGG 1 cut(s) 1375
AsuHPI GGTGA 1 cut(s) 2216
AsuII TTCGAA 1 cut(s) 803
AxyI CCTNAGG 1 cut(s) 702
BaeGI GKGCMC 4 cut(s) 412, 823, 1173, 2013
BanI GGYRCC 1 cut(s) 2010
BarI GAAGNNNNNNTAC 2 cut(s) 1929, 1961
BbrPI CACGTG 1 cut(s) 205
BbsI GAAGAC 4 cut(s) 233, 728, 1353, 1472
Bbv12I GWGCWC 3 cut(s) 823, 885, 1173
BbvI GCAGC 1 cut(s) 773
BccI CCATC 6 cut(s) 399, 1378, 1588, 1604, 1807, 1874
BcgI CGANNNNNNTGC 2 cut(s) 783, 817
BciT130I CCWGG 2 cut(s) 453, 2007
BciVI GTATCC 1 cut(s) 1231
BclI TGATCA 1 cut(s) 2107
BcnI CCSGG 1 cut(s) 1375
BcoDI GTCTC 3 cut(s) 13, 1406, 1450
BfaI CTAG 3 cut(s) 96, 120, 2220
BfuI GTATCC 1 cut(s) 1231
BglII AGATCT 1 cut(s) 848
BisI GCNGC 3 cut(s) 762, 1011, 1574
BlsI GCNGC 3 cut(s) 763, 1012, 1575
Bme1390I CCNGG 3 cut(s) 453, 1375, 2007
BmgT120I GGNCC 1 cut(s) 810
BmiI GGNNCC 3 cut(s) 1182, 1305, 2012
BmrFI CCNGG 3 cut(s) 453, 1375, 2007
BmsI GCATC 6 cut(s) 193, 793, 1079, 1646, 2197, 2248
BpiI GAAGAC 4 cut(s) 233, 728, 1353, 1472
Bpu10I CCTNAGC 1 cut(s) 1713
Bpu14I TTCGAA 1 cut(s) 803
BpuEI CTTGAG 2 cut(s) 818, 1000
BpuMI CCSGG 1 cut(s) 1375
BsaAI YACGTR 6 cut(s) 205, 254, 1091, 1451, 1910, 1949
BsaBI GATNNNNATC 1 cut(s) 519
BsaHI GRCGYC 2 cut(s) 1246, 1333
BsaI GGTCTC 2 cut(s) 13, 1406
BsaJI CCNNGG 4 cut(s) 24, 452, 1960, 2006
BsaWI WCCGGW 1 cut(s) 2023
BsaXI ACNNNNNCTCC 2 cut(s) 1848, 1878
Bsc4I CCNNNNNNNGG 1 cut(s) 1829
Bse118I RCCGGY 1 cut(s) 2023
Bse21I CCTNAGG 1 cut(s) 702
Bse3DI GCAATG 3 cut(s) 756, 1005, 2015
Bse8I GATNNNNATC 1 cut(s) 519
BseBI CCWGG 2 cut(s) 453, 2007
BseDI CCNNGG 4 cut(s) 24, 452, 1960, 2006
BseGI GGATG 7 cut(s) 229, 442, 885, 1370, 1603, 1818, 2119
BseJI GATNNNNATC 1 cut(s) 519
BseLI CCNNNNNNNGG 1 cut(s) 1829
BseMI GCAATG 3 cut(s) 756, 1005, 2015
BseRI GAGGAG 1 cut(s) 719
BseSI GKGCMC 4 cut(s) 412, 823, 1173, 2013
BseXI GCAGC 1 cut(s) 773
Bsh1236I CGCG 1 cut(s) 165
BshFI GGCC 3 cut(s) 812, 1576, 1959
BshNI GGYRCC 1 cut(s) 2010
BshTI ACCGGT 1 cut(s) 2023
BsiHKAI GWGCWC 3 cut(s) 823, 885, 1173
BsiSI CCGG 2 cut(s) 1374, 2024
BslFI GGGAC 1 cut(s) 1134
BslI CCNNNNNNNGG 1 cut(s) 1829
BsmAI GTCTC 3 cut(s) 13, 1406, 1450
BsmFI GGGAC 1 cut(s) 1134
BsnI GGCC 3 cut(s) 812, 1576, 1959
Bso31I GGTCTC 2 cut(s) 13, 1406
Bsp119I TTCGAA 1 cut(s) 803
Bsp1286I GDGCHC 5 cut(s) 412, 823, 885, 1173, 2013
Bsp1407I TGTACA 1 cut(s) 658
Bsp143I GATC 9 cut(s) 55, 166, 199, 469, 848, 1023, 1816, 1978, 2107
BspACI CCGC 2 cut(s) 1010, 1573
BspANI GGCC 3 cut(s) 812, 1576, 1959
BspFNI CGCG 1 cut(s) 165
BspLI GGNNCC 3 cut(s) 1182, 1305, 2012
BspPI GGATC 2 cut(s) 50, 1824
BspT104I TTCGAA 1 cut(s) 803
BspT107I GGYRCC 1 cut(s) 2010
BspTNI GGTCTC 2 cut(s) 13, 1406
BsrDI GCAATG 3 cut(s) 756, 1005, 2015
BsrFI RCCGGY 1 cut(s) 2023
BsrGI TGTACA 1 cut(s) 658
BssAI RCCGGY 1 cut(s) 2023
BssECI CCNNGG 4 cut(s) 24, 452, 1960, 2006
BssMI GATC 9 cut(s) 55, 166, 199, 469, 848, 1023, 1816, 1978, 2107
BssNAI GTATAC 1 cut(s) 1548
BssNI GRCGYC 2 cut(s) 1246, 1333
BssT1I CCWWGG 2 cut(s) 24, 1960
Bst1107I GTATAC 1 cut(s) 1548
Bst2UI CCWGG 2 cut(s) 453, 2007
Bst4CI ACNGT 5 cut(s) 1148, 1352, 1557, 2093, 2155
Bst6I CTCTTC 1 cut(s) 1431
BstACI GRCGYC 2 cut(s) 1246, 1333
BstAPI GCANNNNNTGC 1 cut(s) 2017
BstAUI TGTACA 1 cut(s) 658
BstBAI YACGTR 6 cut(s) 205, 254, 1091, 1451, 1910, 1949
BstBI TTCGAA 1 cut(s) 803
BstC8I GCNNGC 6 cut(s) 127, 972, 1308, 1509, 1571, 1709
BstEII GGTNACC 1 cut(s) 1104
BstF5I GGATG 7 cut(s) 229, 442, 885, 1370, 1603, 1818, 2119
BstFNI CGCG 1 cut(s) 165
BstHHI GCGC 2 cut(s) 165, 1117
BstKTI GATC 9 cut(s) 58, 169, 202, 472, 851, 1026, 1819, 1981, 2110
BstMAI GTCTC 3 cut(s) 13, 1406, 1450
BstMBI GATC 9 cut(s) 55, 166, 199, 469, 848, 1023, 1816, 1978, 2107
BstMWI GCNNNNNNNGC 6 cut(s) 818, 1043, 1217, 1675, 1696, 2017
BstNI CCWGG 2 cut(s) 453, 2007
BstNSI RCATGY 7 cut(s) 269, 342, 379, 784, 827, 974, 1573
BstPI GGTNACC 1 cut(s) 1104
BstSCI CCNGG 3 cut(s) 451, 1373, 2005
BstSLI GKGCMC 4 cut(s) 412, 823, 1173, 2013
BstSNI TACGTA 2 cut(s) 254, 1091
BstUI CGCG 1 cut(s) 165
BstV1I GCAGC 1 cut(s) 773
BstV2I GAAGAC 4 cut(s) 233, 728, 1353, 1472
BstX2I RGATCY 3 cut(s) 55, 848, 1816
BstYI RGATCY 3 cut(s) 55, 848, 1816
BstZ17I GTATAC 1 cut(s) 1548
Bsu36I CCTNAGG 1 cut(s) 702
BsuI GTATCC 1 cut(s) 1231
BsuRI GGCC 3 cut(s) 812, 1576, 1959
BtsCI GGATG 7 cut(s) 229, 442, 885, 1370, 1603, 1818, 2119
BtsIMutI CAGTG 9 cut(s) 210, 342, 410, 465, 495, 642, 1357, 1892, 2160
Cac8I GCNNGC 6 cut(s) 127, 972, 1308, 1509, 1571, 1709
CfoI GCGC 2 cut(s) 165, 1117
Cfr10I RCCGGY 1 cut(s) 2023
Cfr13I GGNCC 1 cut(s) 810
CseI GACGC 2 cut(s) 1322, 1773
Csp6I GTAC 4 cut(s) 255, 659, 1494, 2074
CspAI ACCGGT 1 cut(s) 2023
CviQI GTAC 4 cut(s) 255, 659, 1494, 2074
DpnI GATC 9 cut(s) 57, 168, 201, 471, 850, 1025, 1818, 1980, 2109
DpnII GATC 9 cut(s) 55, 166, 199, 469, 848, 1023, 1816, 1978, 2107
DraI TTTAAA 1 cut(s) 1188
EaeI YGGCCR 1 cut(s) 1574
Eam1104I CTCTTC 1 cut(s) 1431
EarI CTCTTC 1 cut(s) 1431
Eco105I TACGTA 2 cut(s) 254, 1091
Eco130I CCWWGG 2 cut(s) 24, 1960
Eco31I GGTCTC 2 cut(s) 13, 1406
Eco57I CTGAAG 2 cut(s) 936, 1242
Eco72I CACGTG 1 cut(s) 205
Eco81I CCTNAGG 1 cut(s) 702
Eco91I GGTNACC 1 cut(s) 1104
EcoO65I GGTNACC 1 cut(s) 1104
EcoRII CCWGG 2 cut(s) 451, 2005
EcoT14I CCWWGG 2 cut(s) 24, 1960
EcoT22I ATGCAT 3 cut(s) 786, 976, 2241
ErhI CCWWGG 2 cut(s) 24, 1960
FaqI GGGAC 1 cut(s) 1134
FauNDI CATATG 1 cut(s) 1165
FbaI TGATCA 1 cut(s) 2107
FblI GTMKAC 1 cut(s) 1547
Fnu4HI GCNGC 3 cut(s) 762, 1011, 1574
FokI GGATG 7 cut(s) 216, 449, 872, 1357, 1610, 1825, 2106
Fsp4HI GCNGC 3 cut(s) 762, 1011, 1574
FspAI RTGCGCAY 1 cut(s) 1116
FspBI CTAG 3 cut(s) 96, 120, 2220
FspI TGCGCA 1 cut(s) 1116
GlaI GCGC 2 cut(s) 164, 1116
GluI GCNGC 3 cut(s) 762, 1011, 1574
HaeIII GGCC 3 cut(s) 812, 1576, 1959
HapII CCGG 2 cut(s) 1374, 2024
HgaI GACGC 2 cut(s) 1322, 1773
HhaI GCGC 2 cut(s) 165, 1117
Hin1I GRCGYC 2 cut(s) 1246, 1333
Hin6I GCGC 2 cut(s) 163, 1115
HinP1I GCGC 2 cut(s) 163, 1115
HincII GTYRAC 1 cut(s) 1870
HindII GTYRAC 1 cut(s) 1870
HinfI GANTC 3 cut(s) 443, 680, 805
HpaII CCGG 2 cut(s) 1374, 2024
HphI GGTGA 1 cut(s) 2216
Hpy166II GTNNAC 9 cut(s) 373, 821, 905, 1171, 1548, 1753, 1766, 1870, 1972
Hpy188III TCNNGA 5 cut(s) 473, 512, 701, 2087, 2123
Hpy8I GTNNAC 9 cut(s) 373, 821, 905, 1171, 1548, 1753, 1766, 1870, 1972
Hpy99I CGWCG 1 cut(s) 1365
HpyAV CCTTC 2 cut(s) 587, 1510
HpyCH4III ACNGT 5 cut(s) 1148, 1352, 1557, 2093, 2155
HpyCH4IV ACGT 8 cut(s) 204, 253, 360, 1090, 1246, 1450, 1909, 1948
HpyF10VI GCNNNNNNNGC 6 cut(s) 818, 1043, 1217, 1675, 1696, 2017
HpySE526I ACGT 8 cut(s) 204, 253, 360, 1090, 1246, 1450, 1909, 1948
Hsp92I GRCGYC 2 cut(s) 1246, 1333
HspAI GCGC 2 cut(s) 163, 1115
Ksp22I TGATCA 1 cut(s) 2107
Kzo9I GATC 9 cut(s) 55, 166, 199, 469, 848, 1023, 1816, 1978, 2107
LmnI GCTCC 2 cut(s) 880, 1303
Lsp1109I GCAGC 1 cut(s) 773
LweI GCATC 6 cut(s) 193, 793, 1079, 1646, 2197, 2248
MaeI CTAG 3 cut(s) 96, 120, 2220
MaeII ACGT 8 cut(s) 204, 253, 360, 1090, 1246, 1450, 1909, 1948
MaeIII GTNAC 5 cut(s) 208, 463, 1104, 1142, 2026
MalI GATC 9 cut(s) 57, 168, 201, 471, 850, 1025, 1818, 1980, 2109
MboI GATC 9 cut(s) 55, 166, 199, 469, 848, 1023, 1816, 1978, 2107
MfeI CAATTG 2 cut(s) 727, 2111
MflI RGATCY 3 cut(s) 55, 848, 1816
MhlI GDGCHC 5 cut(s) 412, 823, 885, 1173, 2013
MmeI TCCRAC 2 cut(s) 1307, 2122
Mph1103I ATGCAT 3 cut(s) 786, 976, 2241
MroXI GAANNNNTTC 2 cut(s) 1179, 2193
MseI TTAA 7 cut(s) 14, 422, 609, 921, 966, 1187, 1773
MslI CAYNNNNRTG 4 cut(s) 789, 898, 2052, 2244
MspI CCGG 2 cut(s) 1374, 2024
MspR9I CCNGG 3 cut(s) 453, 1375, 2007
MunI CAATTG 2 cut(s) 727, 2111
MvaI CCWGG 2 cut(s) 453, 2007
MvnI CGCG 1 cut(s) 165
MwoI GCNNNNNNNGC 6 cut(s) 818, 1043, 1217, 1675, 1696, 2017
NciI CCSGG 1 cut(s) 1375
NdeI CATATG 1 cut(s) 1165
NdeII GATC 9 cut(s) 55, 166, 199, 469, 848, 1023, 1816, 1978, 2107
NlaIV GGNNCC 3 cut(s) 1182, 1305, 2012
NmeAIII GCCGAG 2 cut(s) 77, 838
NmuCI GTSAC 3 cut(s) 208, 463, 1142
NsbI TGCGCA 1 cut(s) 1116
NsiI ATGCAT 3 cut(s) 786, 976, 2241
NspI RCATGY 7 cut(s) 269, 342, 379, 784, 827, 974, 1573
NspV TTCGAA 1 cut(s) 803
PaeI GCATGC 2 cut(s) 974, 1573
PciI ACATGT 2 cut(s) 265, 375
PdmI GAANNNNTTC 2 cut(s) 1179, 2193
PfeI GAWTC 3 cut(s) 443, 680, 805
PinAI ACCGGT 1 cut(s) 2023
PkrI GCNGC 3 cut(s) 763, 1012, 1575
PmaCI CACGTG 1 cut(s) 205
PmlI CACGTG 1 cut(s) 205
Ppu21I YACGTR 6 cut(s) 205, 254, 1091, 1451, 1910, 1949
PscI ACATGT 2 cut(s) 265, 375
PsiI TTATAA 1 cut(s) 1388
Psp1406I AACGTT 1 cut(s) 360
Psp6I CCWGG 2 cut(s) 451, 2005
PspCI CACGTG 1 cut(s) 205
PspEI GGTNACC 1 cut(s) 1104
PspGI CCWGG 2 cut(s) 451, 2005
PspN4I GGNNCC 3 cut(s) 1182, 1305, 2012
PspPI GGNCC 1 cut(s) 810
PsuI RGATCY 3 cut(s) 55, 848, 1816
RsaI GTAC 4 cut(s) 256, 660, 1495, 2075
RsaNI GTAC 4 cut(s) 255, 659, 1494, 2074
RseI CAYNNNNRTG 4 cut(s) 789, 898, 2052, 2244
SaqAI TTAA 7 cut(s) 14, 422, 609, 921, 966, 1187, 1773
SatI GCNGC 3 cut(s) 762, 1011, 1574
Sau3AI GATC 9 cut(s) 55, 166, 199, 469, 848, 1023, 1816, 1978, 2107
Sau96I GGNCC 1 cut(s) 810
ScrFI CCNGG 3 cut(s) 453, 1375, 2007
SduI GDGCHC 5 cut(s) 412, 823, 885, 1173, 2013
SfaNI GCATC 6 cut(s) 193, 793, 1079, 1646, 2197, 2248
SfuI TTCGAA 1 cut(s) 803
SmiMI CAYNNNNRTG 4 cut(s) 789, 898, 2052, 2244
SmlI CTYRAG 2 cut(s) 833, 979
SmoI CTYRAG 2 cut(s) 833, 979
SnaBI TACGTA 2 cut(s) 254, 1091
SphI GCATGC 2 cut(s) 974, 1573
SsiI CCGC 2 cut(s) 1010, 1573
SspI AATATT 1 cut(s) 1792
SspMI CTAG 3 cut(s) 96, 120, 2220
StyD4I CCNGG 3 cut(s) 451, 1373, 2005
StyI CCWWGG 2 cut(s) 24, 1960
TaaI ACNGT 5 cut(s) 1148, 1352, 1557, 2093, 2155
TaiI ACGT 8 cut(s) 207, 256, 363, 1093, 1249, 1453, 1912, 1951
TaqI TCGA 5 cut(s) 472, 803, 943, 1592, 1602
TatI WGTACW 2 cut(s) 658, 2073
TauI GCSGC 2 cut(s) 1013, 1576
TfiI GAWTC 3 cut(s) 443, 680, 805
Tru1I TTAA 7 cut(s) 14, 422, 609, 921, 966, 1187, 1773
Tru9I TTAA 7 cut(s) 14, 422, 609, 921, 966, 1187, 1773
TscAI CASTG 9 cut(s) 217, 349, 417, 472, 502, 649, 1357, 1892, 2160
TseFI GTSAC 3 cut(s) 208, 463, 1142
TseI GCWGC 1 cut(s) 761
Tsp45I GTSAC 3 cut(s) 208, 463, 1142
TspDTI ATGAA 7 cut(s) 503, 745, 918, 1047, 1549, 2190, 2202
TspGWI ACGGA 1 cut(s) 1511
TspRI CASTG 9 cut(s) 217, 349, 417, 472, 502, 649, 1357, 1892, 2160
VneI GTGCAC 2 cut(s) 819, 1169
XapI RAATTY 3 cut(s) 157, 578, 1942
XceI RCATGY 7 cut(s) 269, 342, 379, 784, 827, 974, 1573
XmiI GTMKAC 1 cut(s) 1547
XmnI GAANNNNTTC 2 cut(s) 1179, 2193
XspI CTAG 3 cut(s) 96, 120, 2220
ZraI GACGTC 1 cut(s) 1247
Zsp2I ATGCAT 3 cut(s) 786, 976, 2241
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.