Rmu_sc0006373.1_g000003

protein FAR1-RELATED SEQUENCE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006373.1
OG0000143
Physical Location & Seq
Forward (+)
24635 .. 25366
732 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006373.1_g000003.1.cds

Sequence Viewer

Length: 732 bp
atgtctaaaaatttcgtgcgacctaagcaaattttgaccaccataaagaacaaagatgggttgaatgtgtcaacaatgaagacaatatacaatgctagacaaaggtacaagacacaagagttggctggaagaacacaaatgcagcaattgttacgtaaattgtctgatcacaactatattgagcatcatagaagtattggacccgatcaggttctgttagacttgttttggactcaccccacaaatgttgatattttacgttcatttccgcatgtagttataatggactgcacctacaagactaataggtaccgttttccactattagagattgtgggggtgacttcaactaacatcacattcactgttgcatttgcataccttaattcagagaaggaagataatttcacatgggctttgtctaggttgaaggagctgtttaatgatgatcttcctcatgtgttagtcacagatagagacttggcgcttatgaatgctatacgtaaaatatttcctactagccatcatatgttgtgtacatggcatattaataatggggtgcttgcaaaatgcagtagcatgtttgataccaaagaaaggtgggagatgtttaatgattcttggcaattcgtgatcaattccaataatatggaggagtatctggagaggctaaattcatttgaatttagatataaaacatattcatatgctatattgctattacctatttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE

Protein Analysis

243

Amino Acids

28.81

Weight (kDa)

8.89

Isoelectric Point (pI)

34.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000143)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G76710 AT1G76710 AT1G76710 AT1G76710
fragaria_vesca FvH4_1g20063 FvH4_2g15231 FvH4_3g04011 FvH4_3g28681 FvH4_4g01411 FvH4_4g10181 FvH4_4g15922 FvH4_4g16651 FvH4_4g16652 FvH4_5g13892 FvH4_5g13893 FvH4_5g20623 FvH4_5g20623 FvH4_5g20623 FvH4_5g20623 FvH4_5g25511 FvH4_6g12551 FvH4_6g12552 FvH4_6g38841 FvH4_7g04391
malus_domestica MD05G1031300.v1.1 MD05G1031400.v1.1 MD05G1031500.v1.1 MD08G1164400.v1.1 MD10G1032900.v1.1 MD10G1033000.v1.1 MD10G1033100.v1.1
prunus_persica Prupe.3G240700_v2.0.a1 Prupe.7G144600_v2.0.a1 Prupe.8G038500_v2.0.a1 Prupe.8G038500_v2.0.a1
pyrus_communis pycom05g02250 pycom05g02260 pycom05g02270 pycom05g02280 pycom08g14160 pycom10g02100 pycom10g02110 pycom10g02130
rosa_chinensis RchiOBHm_Chr1g0329481 RchiOBHm_Chr1g0329491 RchiOBHm_Chr1g0341531 RchiOBHm_Chr3g0464811 RchiOBHm_Chr3g0494701 RchiOBHm_Chr3g0497501 RchiOBHm_Chr4g0385841 RchiOBHm_Chr5g0061181 RchiOBHm_Chr6g0263001 RchiOBHm_Chr7g0193111 RchiOBHm_Chr7g0206281 RchiOBHm_Chr7g0206311
rosa_laevigata RLG00000018908 RLG00000028528 RLG00000028803 RLG00000029882 RLG00000029883 RLG00000030361
rosa_multiflora Rmu_co8196328.1_g000001 Rmu_co8259135.1_g000001 Rmu_co8269185.1_g000001 Rmu_sc0000076.1_g000019 Rmu_sc0000311.1_g000007 Rmu_sc0000429.1_g000038 Rmu_sc0000429.1_g000039 Rmu_sc0000429.1_g000040 Rmu_sc0000511.1_g000005 Rmu_sc0000539.1_g000054 Rmu_sc0000566.1_g000039 Rmu_sc0000805.1_g000032 Rmu_sc0000870.1_g000073 Rmu_sc0000870.1_g000074 Rmu_sc0001010.1_g000018 Rmu_sc0001083.1_g000013 Rmu_sc0001114.1_g000011 Rmu_sc0001702.1_g000027 Rmu_sc0001779.1_g000012 Rmu_sc0002923.1_g000036 Rmu_sc0003242.1_g000011 Rmu_sc0003291.1_g000036 Rmu_sc0003393.1_g000012 Rmu_sc0003872.1_g000016 Rmu_sc0003872.1_g000017 Rmu_sc0003872.1_g000018 Rmu_sc0004084.1_g000020 Rmu_sc0004386.1_g000005 Rmu_sc0004622.1_g000005 Rmu_sc0004742.1_g000021 Rmu_sc0004755.1_g000020 Rmu_sc0004805.1_g000036 Rmu_sc0005065.1_g000006 Rmu_sc0005177.1_g000004 Rmu_sc0006373.1_g000003 Rmu_sc0006373.1_g000004 Rmu_sc0007121.1_g000002 Rmu_sc0007943.1_g000003 Rmu_sc0010368.1_g000006 Rmu_sc0010543.1_g000001 Rmu_sc0012591.1_g000006 Rmu_sc0013504.1_g000009 Rmu_sc0015025.1_g000001 Rmu_sc0016170.1_g000001 Rmu_sc0017156.1_g000001 Rmu_sc0026439.1_g000001
rosa_roxburghii Rroxscaffold_175G00432280 Rroxscaffold_1G00030190 Rroxscaffold_1G00030880 Rroxscaffold_2G00090520 Rroxscaffold_3G00227940 Rroxscaffold_3G00233400 Rroxscaffold_3G00238500 Rroxscaffold_3G00251650 Rroxscaffold_4G00301570 Rroxscaffold_4G00321040 Rroxscaffold_5G00350880 Rroxscaffold_7G00184400
rosa_rugosa Rorug01G0080800 Rorug01G0080900 Rorug01G0193900 Rorug02G0275900 Rorug02G0275900 Rorug02G0275900 Rorug02G0305400 Rorug02G0311800 Rorug02G0350400 Rorug02G0381300 Rorug03G0136700 Rorug03G0181900 Rorug03G0268000 Rorug04G0301600 Rorug05G0175100 Rorug05G0250700 Rorug05G0298200 Rorug05G0596000 Rorug06G0029500 Rorug07G0094300 Rorug07G0094300 Rorug07G0095400 Rorug07G0140100
rosa_samantha Rh1AG099200 Rh1AG190500 Rh1BG078900 Rh1BG079000 Rh1BG079100 Rh1CG084600 Rh1CG084700 Rh1CG095300 Rh1CG175900 Rh1DG103300 Rh1DG150400 Rh2AG079300 Rh2AG272400 Rh2AG464800 Rh2AG507400 Rh2DG078300 Rh2DG078400 Rh3CG206900 Rh3CG295400 Rh3DG206800 Rh3DG356200 Rh4CG071500 Rh4CG179200 Rh4DG064700 Rh5CG362400 Rh7AG212300 Rh7AG226200 Rh7BG222200
rosa_wichuraiana Rw0G009990 Rw0G011260 Rw0G011270 Rw0G012910 Rw0G013740 Rw1G007740 Rw1G013050 Rw1G014230 Rw2G014270 Rw3G012720 Rw3G028110 Rw4G006630 Rw4G015270 Rw4G016160 Rw4G031380 Rw5G011440 Rw5G029180 Rw5G048360 Rw5G048430 Rw5G048780 Rw6G005250 Rw6G006390 Rw7G002840 Rw7G014080 Rw7G019650 Rw7G032790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 281
Acc65I GGTACC 1 cut(s) 309
AccB1I GGYRCC 1 cut(s) 309
AciI CCGC 1 cut(s) 269
AcsI RAATTY 4 cut(s) 10, 30, 673, 683
AfaI GTAC 3 cut(s) 107, 311, 538
AfiI CCNNNNNNNGG 1 cut(s) 597
AgsI TTSAA 4 cut(s) 64, 348, 430, 683
AluBI AGCT 1 cut(s) 436
AluI AGCT 1 cut(s) 436
Alw26I GTCTC 1 cut(s) 471
AlwNI CAGNNNCTG 1 cut(s) 214
ApeKI GCWGC 1 cut(s) 142
ApoI RAATTY 4 cut(s) 10, 30, 673, 683
AseI ATTAAT 1 cut(s) 549
Asp718I GGTACC 1 cut(s) 309
AspLEI GCGC 1 cut(s) 487
AspS9I GGNCC 1 cut(s) 200
AsuHPI GGTGA 2 cut(s) 227, 352
AvaII GGWCC 1 cut(s) 200
BanI GGYRCC 1 cut(s) 309
BarI GAAGNNNNNNTAC 2 cut(s) 71, 103
BbsI GAAGAC 1 cut(s) 86
BbvI GCAGC 1 cut(s) 154
BccI CCATC 2 cut(s) 50, 531
BclI TGATCA 2 cut(s) 166, 633
BcoDI GTCTC 1 cut(s) 471
BfaI CTAG 3 cut(s) 96, 423, 519
BfoI RGCGCY 1 cut(s) 488
BisI GCNGC 1 cut(s) 143
BlsI GCNGC 1 cut(s) 144
Bme18I GGWCC 1 cut(s) 200
BmgT120I GGNCC 1 cut(s) 200
BmiI GGNNCC 2 cut(s) 202, 311
BmsI GCATC 1 cut(s) 193
BpiI GAAGAC 1 cut(s) 86
BpmI CTGGAG 1 cut(s) 683
Bpu10I CCTNAGC 1 cut(s) 24
BsaAI YACGTR 2 cut(s) 155, 503
Bsc4I CCNNNNNNNGG 1 cut(s) 597
BseLI CCNNNNNNNGG 1 cut(s) 597
BseRI GAGGAG 1 cut(s) 668
BseXI GCAGC 1 cut(s) 154
BsgI GTGCAG 1 cut(s) 274
BshNI GGYRCC 1 cut(s) 309
BslI CCNNNNNNNGG 1 cut(s) 597
BsmAI GTCTC 1 cut(s) 471
BsmI GAATGC 1 cut(s) 499
Bsp1407I TGTACA 1 cut(s) 536
Bsp143I GATC 4 cut(s) 166, 205, 448, 633
BspACI CCGC 1 cut(s) 269
BspLI GGNNCC 2 cut(s) 202, 311
BspT107I GGYRCC 1 cut(s) 309
BsrGI TGTACA 1 cut(s) 536
BssMI GATC 4 cut(s) 166, 205, 448, 633
Bst4CI ACNGT 2 cut(s) 314, 367
BstAUI TGTACA 1 cut(s) 536
BstBAI YACGTR 2 cut(s) 155, 503
BstC8I GCNNGC 1 cut(s) 564
BstDEI CTNAG 1 cut(s) 24
BstH2I RGCGCY 1 cut(s) 488
BstHHI GCGC 1 cut(s) 487
BstKTI GATC 4 cut(s) 169, 208, 451, 636
BstMAI GTCTC 1 cut(s) 471
BstMBI GATC 4 cut(s) 166, 205, 448, 633
BstMWI GCNNNNNNNGC 1 cut(s) 25
BstNSI RCATGY 2 cut(s) 275, 583
BstSNI TACGTA 2 cut(s) 155, 503
BstV1I GCAGC 1 cut(s) 154
BstV2I GAAGAC 1 cut(s) 86
BstXI CCANNNNNNTGG 1 cut(s) 649
BtsIMutI CAGTG 1 cut(s) 363
Cac8I GCNNGC 1 cut(s) 564
CaiI CAGNNNCTG 1 cut(s) 214
CfoI GCGC 1 cut(s) 487
Cfr13I GGNCC 1 cut(s) 200
Csp6I GTAC 3 cut(s) 106, 310, 537
CspCI CAANNNNNGTGG 2 cut(s) 229, 264
CviAII CATG 5 cut(s) 272, 411, 458, 540, 580
CviJI RGCY 5 cut(s) 125, 416, 436, 522, 670
CviKI_1 RGCY 5 cut(s) 125, 416, 436, 522, 670
CviQI GTAC 3 cut(s) 106, 310, 537
DdeI CTNAG 1 cut(s) 24
DpnI GATC 4 cut(s) 168, 207, 450, 635
DpnII GATC 4 cut(s) 166, 205, 448, 633
Eco105I TACGTA 2 cut(s) 155, 503
Eco47I GGWCC 1 cut(s) 200
FaeI CATG 5 cut(s) 275, 414, 461, 543, 583
FatI CATG 5 cut(s) 271, 410, 457, 539, 579
FauNDI CATATG 2 cut(s) 528, 706
FbaI TGATCA 2 cut(s) 166, 633
Fnu4HI GCNGC 1 cut(s) 143
Fsp4HI GCNGC 1 cut(s) 143
FspBI CTAG 3 cut(s) 96, 423, 519
GlaI GCGC 1 cut(s) 486
GluI GCNGC 1 cut(s) 143
GsuI CTGGAG 1 cut(s) 683
HaeII RGCGCY 1 cut(s) 488
HhaI GCGC 1 cut(s) 487
Hin1II CATG 5 cut(s) 275, 414, 461, 543, 583
Hin6I GCGC 1 cut(s) 485
HinP1I GCGC 1 cut(s) 485
HincII GTYRAC 1 cut(s) 72
HindII GTYRAC 1 cut(s) 72
HinfI GANTC 2 cut(s) 232, 617
HphI GGTGA 2 cut(s) 227, 352
Hpy166II GTNNAC 2 cut(s) 72, 537
Hpy188I TCNGA 2 cut(s) 166, 391
Hpy188III TCNNGA 2 cut(s) 631, 662
Hpy8I GTNNAC 2 cut(s) 72, 537
HpyAV CCTTC 2 cut(s) 388, 424
HpyCH4III ACNGT 2 cut(s) 314, 367
HpyCH4IV ACGT 3 cut(s) 154, 259, 502
HpyCH4V TGCA 6 cut(s) 142, 291, 371, 377, 566, 573
HpyF10VI GCNNNNNNNGC 1 cut(s) 25
HpyF3I CTNAG 1 cut(s) 24
HpySE526I ACGT 3 cut(s) 154, 259, 502
Hsp92II CATG 5 cut(s) 275, 414, 461, 543, 583
HspAI GCGC 1 cut(s) 485
KpnI GGTACC 1 cut(s) 313
Ksp22I TGATCA 2 cut(s) 166, 633
Kzo9I GATC 4 cut(s) 166, 205, 448, 633
LmnI GCTCC 1 cut(s) 433
LpnPI CCDG 3 cut(s) 111, 194, 647
Lsp1109I GCAGC 1 cut(s) 154
LweI GCATC 1 cut(s) 193
MaeI CTAG 3 cut(s) 96, 423, 519
MaeII ACGT 3 cut(s) 154, 259, 502
MaeIII GTNAC 3 cut(s) 150, 340, 466
MalI GATC 4 cut(s) 168, 207, 450, 635
MboI GATC 4 cut(s) 166, 205, 448, 633
MboII GAAGA 4 cut(s) 91, 141, 410, 443
MfeI CAATTG 1 cut(s) 146
MlyI GAGTC 1 cut(s) 226
MnlI CCTC 3 cut(s) 465, 646, 660
MseI TTAA 4 cut(s) 384, 441, 549, 612
MunI CAATTG 1 cut(s) 146
Mva1269I GAATGC 1 cut(s) 499
MwoI GCNNNNNNNGC 1 cut(s) 25
NdeI CATATG 2 cut(s) 528, 706
NdeII GATC 4 cut(s) 166, 205, 448, 633
NlaIII CATG 5 cut(s) 275, 414, 461, 543, 583
NlaIV GGNNCC 2 cut(s) 202, 311
NmuCI GTSAC 2 cut(s) 340, 466
NspI RCATGY 2 cut(s) 275, 583
PctI GAATGC 1 cut(s) 499
PfeI GAWTC 1 cut(s) 617
PkrI GCNGC 1 cut(s) 144
PleI GAGTC 1 cut(s) 226
PpsI GAGTC 1 cut(s) 226
Ppu21I YACGTR 2 cut(s) 155, 503
PshBI ATTAAT 1 cut(s) 549
PsiI TTATAA 1 cut(s) 281
PspN4I GGNNCC 2 cut(s) 202, 311
PspPI GGNCC 1 cut(s) 200
PstNI CAGNNNCTG 1 cut(s) 214
RsaI GTAC 3 cut(s) 107, 311, 538
RsaNI GTAC 3 cut(s) 106, 310, 537
SaqAI TTAA 4 cut(s) 384, 441, 549, 612
SatI GCNGC 1 cut(s) 143
Sau3AI GATC 4 cut(s) 166, 205, 448, 633
Sau96I GGNCC 1 cut(s) 200
SchI GAGTC 1 cut(s) 226
SfaNI GCATC 1 cut(s) 193
SinI GGWCC 1 cut(s) 200
SnaBI TACGTA 2 cut(s) 155, 503
SsiI CCGC 1 cut(s) 269
SspI AATATT 1 cut(s) 510
SspMI CTAG 3 cut(s) 96, 423, 519
TaaI ACNGT 2 cut(s) 314, 367
TaiI ACGT 3 cut(s) 157, 262, 505
TatI WGTACW 1 cut(s) 536
TfiI GAWTC 1 cut(s) 617
Tru1I TTAA 4 cut(s) 384, 441, 549, 612
Tru9I TTAA 4 cut(s) 384, 441, 549, 612
TscAI CASTG 1 cut(s) 370
TseFI GTSAC 2 cut(s) 340, 466
TseI GCWGC 1 cut(s) 142
Tsp45I GTSAC 2 cut(s) 340, 466
TspDTI ATGAA 5 cut(s) 92, 252, 506, 666, 693
TspRI CASTG 1 cut(s) 370
VpaK11BI GGWCC 1 cut(s) 200
VspI ATTAAT 1 cut(s) 549
XapI RAATTY 4 cut(s) 10, 30, 673, 683
XceI RCATGY 2 cut(s) 275, 583
XspI CTAG 3 cut(s) 96, 423, 519
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.