FvH4_6g12551

protein FAR1-RELATED SEQUENCE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000143
Physical Location & Seq
Reverse (-)
7598812 .. 7600163
1352 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g12551.t1

Sequence Viewer

Length: 1191 bp
ATGGAATGTAGGGTTGATGCAGCTGAAATTAGTCTTGTCTCATGTGGTTGTGCCATACGCCGCACACACCAATTACCATGTGCACATGAGATTTTTGAATATCAGAATTCCTATCAGCCTATTCCAATAAATGCTGTTCACTCACATTGGAGGCGGTTAAGTGTAGGTAACTTTGAGGAGGAAATTGATCACCAAGAAAAACTTCAGCTAAGACTGCGATTGACACATTTGCAAAAATGGCTCGAAGAAAAGGATGATGAAACCAAGAGACAGGTCTTGTTGAAAATAGACGAGATTATAACTCCAAGTTCGACAATGCTTCAACAACCAAGTGAGAAGATTAAAACCAAAGGGCGTCCTAAGATCGACAGTAGCACTCGTCGTCTACCATCTGCTTTTGAGATTGCTGAAGCTAGTCTCATTCAAAGTCAGTCACAAGTACTATCAGAAAAGGTTAATGCTTCTCCTACGGTTGAATTGTCTTCAGCAAAATCAGACAAGCATCCAGAGACAAATCCACCTATCTCCATGAGTCAAAACACTTCACGATTTAAGTTAACACAAAAGTATACATCACAATTCATTGTTGGCATGAGGCACTACATCTTAGGTTCATTTGATGTTGAAGATGATGGTAATTGTGGTTATAGAGTTGTAGCATCCATTATGGGATTCGGTAGGCGTTCTTGGAGAAGGGTGCGACTTGACCTAATGAATGAGCTCAAAAGTATGCCTCATTTGTACAGGGAACTATATGGCAGCGAAGACGGTGTTGAGAAAATCAAACAGAGAATTTACCATTCTGGATCCGCTGCACCGCGTAGAAAATGGATGTGTATAACTGATATGAGGCATCTGATCGCTACTTGTTACGGAGTTGTTGTTATAAACTTATCTGATGGACAGTGCCTGACCTTTCTTCCTTTGATGGAACACGTCCTTGGAAGATTTCAAAATCAAGAATTGCCTGAACTTGGAATTGGTTTTGTTAATGGAAATCACTTTGTGCAGGTATCGTTGGTAGCAGGATGTCCATTACCACCAATTCCACCAGATTGGTACCGTCATGCTGATGACAAAGCAAAATCATTATACAGTAGATATATTAATCGTTTGCATCTCTATACTCAAATACCCCATCCAGAAAGAGTTACTACAGTTTCCGAGACTATCACACTTGAAGATCATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AFT FAR1 MULE

Protein Analysis

397

Amino Acids

45.46

Weight (kDa)

8.04

Isoelectric Point (pI)

48.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000143)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G76710 AT1G76710 AT1G76710 AT1G76710
fragaria_vesca FvH4_1g20063 FvH4_2g15231 FvH4_3g04011 FvH4_3g28681 FvH4_4g01411 FvH4_4g10181 FvH4_4g15922 FvH4_4g16651 FvH4_4g16652 FvH4_5g13892 FvH4_5g13893 FvH4_5g20623 FvH4_5g20623 FvH4_5g20623 FvH4_5g20623 FvH4_5g25511 FvH4_6g12551 FvH4_6g12552 FvH4_6g38841 FvH4_7g04391
malus_domestica MD05G1031300.v1.1 MD05G1031400.v1.1 MD05G1031500.v1.1 MD08G1164400.v1.1 MD10G1032900.v1.1 MD10G1033000.v1.1 MD10G1033100.v1.1
prunus_persica Prupe.3G240700_v2.0.a1 Prupe.7G144600_v2.0.a1 Prupe.8G038500_v2.0.a1 Prupe.8G038500_v2.0.a1
pyrus_communis pycom05g02250 pycom05g02260 pycom05g02270 pycom05g02280 pycom08g14160 pycom10g02100 pycom10g02110 pycom10g02130
rosa_chinensis RchiOBHm_Chr1g0329481 RchiOBHm_Chr1g0329491 RchiOBHm_Chr1g0341531 RchiOBHm_Chr3g0464811 RchiOBHm_Chr3g0494701 RchiOBHm_Chr3g0497501 RchiOBHm_Chr4g0385841 RchiOBHm_Chr5g0061181 RchiOBHm_Chr6g0263001 RchiOBHm_Chr7g0193111 RchiOBHm_Chr7g0206281 RchiOBHm_Chr7g0206311
rosa_laevigata RLG00000018908 RLG00000028528 RLG00000028803 RLG00000029882 RLG00000029883 RLG00000030361
rosa_multiflora Rmu_co8196328.1_g000001 Rmu_co8259135.1_g000001 Rmu_co8269185.1_g000001 Rmu_sc0000076.1_g000019 Rmu_sc0000311.1_g000007 Rmu_sc0000429.1_g000038 Rmu_sc0000429.1_g000039 Rmu_sc0000429.1_g000040 Rmu_sc0000511.1_g000005 Rmu_sc0000539.1_g000054 Rmu_sc0000566.1_g000039 Rmu_sc0000805.1_g000032 Rmu_sc0000870.1_g000073 Rmu_sc0000870.1_g000074 Rmu_sc0001010.1_g000018 Rmu_sc0001083.1_g000013 Rmu_sc0001114.1_g000011 Rmu_sc0001702.1_g000027 Rmu_sc0001779.1_g000012 Rmu_sc0002923.1_g000036 Rmu_sc0003242.1_g000011 Rmu_sc0003291.1_g000036 Rmu_sc0003393.1_g000012 Rmu_sc0003872.1_g000016 Rmu_sc0003872.1_g000017 Rmu_sc0003872.1_g000018 Rmu_sc0004084.1_g000020 Rmu_sc0004386.1_g000005 Rmu_sc0004622.1_g000005 Rmu_sc0004742.1_g000021 Rmu_sc0004755.1_g000020 Rmu_sc0004805.1_g000036 Rmu_sc0005065.1_g000006 Rmu_sc0005177.1_g000004 Rmu_sc0006373.1_g000003 Rmu_sc0006373.1_g000004 Rmu_sc0007121.1_g000002 Rmu_sc0007943.1_g000003 Rmu_sc0010368.1_g000006 Rmu_sc0010543.1_g000001 Rmu_sc0012591.1_g000006 Rmu_sc0013504.1_g000009 Rmu_sc0015025.1_g000001 Rmu_sc0016170.1_g000001 Rmu_sc0017156.1_g000001 Rmu_sc0026439.1_g000001
rosa_roxburghii Rroxscaffold_175G00432280 Rroxscaffold_1G00030190 Rroxscaffold_1G00030880 Rroxscaffold_2G00090520 Rroxscaffold_3G00227940 Rroxscaffold_3G00233400 Rroxscaffold_3G00238500 Rroxscaffold_3G00251650 Rroxscaffold_4G00301570 Rroxscaffold_4G00321040 Rroxscaffold_5G00350880 Rroxscaffold_7G00184400
rosa_rugosa Rorug01G0080800 Rorug01G0080900 Rorug01G0193900 Rorug02G0275900 Rorug02G0275900 Rorug02G0275900 Rorug02G0305400 Rorug02G0311800 Rorug02G0350400 Rorug02G0381300 Rorug03G0136700 Rorug03G0181900 Rorug03G0268000 Rorug04G0301600 Rorug05G0175100 Rorug05G0250700 Rorug05G0298200 Rorug05G0596000 Rorug06G0029500 Rorug07G0094300 Rorug07G0094300 Rorug07G0095400 Rorug07G0140100
rosa_samantha Rh1AG099200 Rh1AG190500 Rh1BG078900 Rh1BG079000 Rh1BG079100 Rh1CG084600 Rh1CG084700 Rh1CG095300 Rh1CG175900 Rh1DG103300 Rh1DG150400 Rh2AG079300 Rh2AG272400 Rh2AG464800 Rh2AG507400 Rh2DG078300 Rh2DG078400 Rh3CG206900 Rh3CG295400 Rh3DG206800 Rh3DG356200 Rh4CG071500 Rh4CG179200 Rh4DG064700 Rh5CG362400 Rh7AG212300 Rh7AG226200 Rh7BG222200
rosa_wichuraiana Rw0G009990 Rw0G011260 Rw0G011270 Rw0G012910 Rw0G013740 Rw1G007740 Rw1G013050 Rw1G014230 Rw2G014270 Rw3G012720 Rw3G028110 Rw4G006630 Rw4G015270 Rw4G016160 Rw4G031380 Rw5G011440 Rw5G029180 Rw5G048360 Rw5G048430 Rw5G048780 Rw6G005250 Rw6G006390 Rw7G002840 Rw7G014080 Rw7G019650 Rw7G032790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 299, 887
Acc36I ACCTGC 1 cut(s) 1000
Acc65I GGTACC 1 cut(s) 1059
AccB1I GGYRCC 1 cut(s) 1059
AccI GTMKAC 2 cut(s) 385, 569
AccII CGCG 1 cut(s) 820
AciI CCGC 4 cut(s) 61, 154, 810, 818
AclWI GGATC 2 cut(s) 801, 814
AcsI RAATTY 2 cut(s) 106, 792
AcuI CTGAAG 3 cut(s) 188, 429, 468
AcyI GRCGYC 1 cut(s) 355
AdeI CACNNNGTG 1 cut(s) 1006
AfaI GTAC 3 cut(s) 441, 743, 1061
AfiI CCNNNNNNNGG 1 cut(s) 974
AflIII ACRYGT 1 cut(s) 934
AgsI TTSAA 8 cut(s) 98, 283, 323, 425, 476, 626, 953, 1181
AjiI CACGTC 1 cut(s) 937
AjuI GAANNNNNNNTTGG 6 cut(s) 186, 218, 924, 956, 963, 995
AluBI AGCT 4 cut(s) 23, 208, 413, 721
AluI AGCT 4 cut(s) 23, 208, 413, 721
Alw21I GWGCWC 2 cut(s) 85, 723
Alw26I GTCTC 5 cut(s) 43, 262, 422, 503, 1160
Alw44I GTGCAC 1 cut(s) 81
AlwI GGATC 2 cut(s) 801, 814
AlwNI CAGNNNCTG 1 cut(s) 910
ApaLI GTGCAC 1 cut(s) 81
ApeKI GCWGC 3 cut(s) 20, 759, 812
ApoI RAATTY 2 cut(s) 106, 792
AseI ATTAAT 1 cut(s) 1107
Asp700I GAANNNNTTC 1 cut(s) 201
Asp718I GGTACC 1 cut(s) 1059
AsuHPI GGTGA 1 cut(s) 182
BaeGI GKGCMC 1 cut(s) 85
BamHI GGATCC 1 cut(s) 806
BanI GGYRCC 1 cut(s) 1059
BanII GRGCYC 1 cut(s) 723
BbsI GAAGAC 2 cut(s) 474, 771
Bbv12I GWGCWC 2 cut(s) 85, 723
BbvI GCAGC 3 cut(s) 32, 771, 799
BccI CCATC 5 cut(s) 397, 626, 893, 922, 1146
BclI TGATCA 1 cut(s) 187
BcoDI GTCTC 5 cut(s) 43, 262, 422, 503, 1160
BfaI CTAG 1 cut(s) 414
BfmI CTRYAG 1 cut(s) 1155
BfuAI ACCTGC 1 cut(s) 1000
BisI GCNGC 4 cut(s) 21, 61, 760, 813
BlsI GCNGC 4 cut(s) 22, 62, 761, 814
BmcAI AGTACT 1 cut(s) 441
BmgBI CACGTC 1 cut(s) 937
BmiI GGNNCC 2 cut(s) 808, 1061
BmsI GCATC 5 cut(s) 7, 511, 668, 862, 1126
BpiI GAAGAC 2 cut(s) 474, 771
BsaHI GRCGYC 1 cut(s) 355
BsaJI CCNNGG 1 cut(s) 940
BsaXI ACNNNNNCTCC 2 cut(s) 867, 897
Bsc4I CCNNNNNNNGG 1 cut(s) 974
BseDI CCNNGG 1 cut(s) 940
BseGI GGATG 6 cut(s) 259, 502, 659, 837, 1034, 1138
BseLI CCNNNNNNNGG 1 cut(s) 974
BseRI GAGGAG 1 cut(s) 191
BseSI GKGCMC 1 cut(s) 85
BseXI GCAGC 3 cut(s) 32, 771, 799
BsgI GTGCAG 2 cut(s) 798, 1028
Bsh1236I CGCG 1 cut(s) 820
BshNI GGYRCC 1 cut(s) 1059
BsiHKAI GWGCWC 2 cut(s) 85, 723
BslI CCNNNNNNNGG 1 cut(s) 974
BsmAI GTCTC 5 cut(s) 43, 262, 422, 503, 1160
Bsp1286I GDGCHC 2 cut(s) 85, 723
Bsp1407I TGTACA 1 cut(s) 741
Bsp143I GATC 5 cut(s) 187, 363, 806, 858, 1183
BspACI CCGC 4 cut(s) 61, 154, 810, 818
BspFNI CGCG 1 cut(s) 820
BspLI GGNNCC 2 cut(s) 808, 1061
BspMI ACCTGC 1 cut(s) 1000
BspPI GGATC 2 cut(s) 801, 814
BspT107I GGYRCC 1 cut(s) 1059
BsrGI TGTACA 1 cut(s) 741
BssECI CCNNGG 1 cut(s) 940
BssMI GATC 5 cut(s) 187, 363, 806, 858, 1183
BssNAI GTATAC 1 cut(s) 570
BssNI GRCGYC 1 cut(s) 355
BssT1I CCWWGG 1 cut(s) 940
Bst1107I GTATAC 1 cut(s) 570
Bst4CI ACNGT 7 cut(s) 371, 472, 770, 906, 1064, 1097, 1159
BstACI GRCGYC 1 cut(s) 355
BstAUI TGTACA 1 cut(s) 741
BstDEI CTNAG 3 cut(s) 209, 360, 607
BstF5I GGATG 6 cut(s) 259, 502, 659, 837, 1034, 1138
BstFNI CGCG 1 cut(s) 820
BstKTI GATC 5 cut(s) 190, 366, 809, 861, 1186
BstMAI GTCTC 5 cut(s) 43, 262, 422, 503, 1160
BstMBI GATC 5 cut(s) 187, 363, 806, 858, 1183
BstMWI GCNNNNNNNGC 2 cut(s) 214, 238
BstSFI CTRYAG 1 cut(s) 1155
BstSLI GKGCMC 1 cut(s) 85
BstUI CGCG 1 cut(s) 820
BstV1I GCAGC 3 cut(s) 32, 771, 799
BstV2I GAAGAC 2 cut(s) 474, 771
BstX2I RGATCY 1 cut(s) 806
BstXI CCANNNNNNTGG 1 cut(s) 1056
BstYI RGATCY 1 cut(s) 806
BstZ17I GTATAC 1 cut(s) 570
BtrI CACGTC 1 cut(s) 937
BtsCI GGATG 6 cut(s) 259, 502, 659, 837, 1034, 1138
BtsIMutI CAGTG 1 cut(s) 911
BveI ACCTGC 1 cut(s) 1000
CaiI CAGNNNCTG 1 cut(s) 910
CseI GACGC 1 cut(s) 344
Csp6I GTAC 3 cut(s) 440, 742, 1060
CviAII CATG 6 cut(s) 42, 78, 86, 529, 592, 1067
CviJI RGCY 6 cut(s) 23, 118, 208, 241, 413, 721
CviKI_1 RGCY 6 cut(s) 23, 118, 208, 241, 413, 721
CviQI GTAC 3 cut(s) 440, 742, 1060
DdeI CTNAG 3 cut(s) 209, 360, 607
DpnI GATC 5 cut(s) 189, 365, 808, 860, 1185
DpnII GATC 5 cut(s) 187, 363, 806, 858, 1183
DraIII CACNNNGTG 1 cut(s) 1006
Ecl136II GAGCTC 1 cut(s) 721
Eco130I CCWWGG 1 cut(s) 940
Eco24I GRGCYC 1 cut(s) 723
Eco53kI GAGCTC 1 cut(s) 721
Eco57I CTGAAG 3 cut(s) 188, 429, 468
EcoICRI GAGCTC 1 cut(s) 721
EcoRI GAATTC 1 cut(s) 106
EcoT14I CCWWGG 1 cut(s) 940
EcoT38I GRGCYC 1 cut(s) 723
ErhI CCWWGG 1 cut(s) 940
FaeI CATG 6 cut(s) 45, 81, 89, 532, 595, 1070
FalI AAGNNNNNCTT 2 cut(s) 186, 218
FatI CATG 6 cut(s) 41, 77, 85, 528, 591, 1066
FbaI TGATCA 1 cut(s) 187
FblI GTMKAC 2 cut(s) 385, 569
Fnu4HI GCNGC 4 cut(s) 21, 61, 760, 813
FokI GGATG 6 cut(s) 266, 489, 646, 844, 1041, 1125
FriOI GRGCYC 1 cut(s) 723
Fsp4HI GCNGC 4 cut(s) 21, 61, 760, 813
FspBI CTAG 1 cut(s) 414
GluI GCNGC 4 cut(s) 21, 61, 760, 813
HgaI GACGC 1 cut(s) 344
Hin1I GRCGYC 1 cut(s) 355
Hin1II CATG 6 cut(s) 45, 81, 89, 532, 595, 1070
HincII GTYRAC 1 cut(s) 558
HindII GTYRAC 1 cut(s) 558
HinfI GANTC 2 cut(s) 532, 672
HpaI GTTAAC 1 cut(s) 558
HphI GGTGA 1 cut(s) 182
Hpy166II GTNNAC 5 cut(s) 83, 139, 386, 558, 570
Hpy188I TCNGA 6 cut(s) 105, 448, 496, 858, 898, 1165
Hpy188III TCNNGA 5 cut(s) 506, 546, 804, 959, 1142
Hpy8I GTNNAC 5 cut(s) 83, 139, 386, 558, 570
Hpy99I CGWCG 1 cut(s) 384
HpyAV CCTTC 1 cut(s) 687
HpyCH4III ACNGT 7 cut(s) 371, 472, 770, 906, 1064, 1097, 1159
HpyCH4IV ACGT 1 cut(s) 936
HpyCH4V TGCA 6 cut(s) 20, 83, 232, 815, 1009, 1117
HpyF10VI GCNNNNNNNGC 2 cut(s) 214, 238
HpyF3I CTNAG 3 cut(s) 209, 360, 607
HpySE526I ACGT 1 cut(s) 936
Hsp92I GRCGYC 1 cut(s) 355
Hsp92II CATG 6 cut(s) 45, 81, 89, 532, 595, 1070
KpnI GGTACC 1 cut(s) 1063
Ksp22I TGATCA 1 cut(s) 187
KspAI GTTAAC 1 cut(s) 558
Kzo9I GATC 5 cut(s) 187, 363, 806, 858, 1183
Lsp1109I GCAGC 3 cut(s) 32, 771, 799
LweI GCATC 5 cut(s) 7, 511, 668, 862, 1126
MaeI CTAG 1 cut(s) 414
MaeII ACGT 1 cut(s) 936
MaeIII GTNAC 4 cut(s) 167, 432, 869, 1150
MalI GATC 5 cut(s) 189, 365, 808, 860, 1185
MboI GATC 5 cut(s) 187, 363, 806, 858, 1183
MboII GAAGA 7 cut(s) 257, 349, 474, 638, 776, 911, 957
MflI RGATCY 1 cut(s) 806
MhlI GDGCHC 2 cut(s) 85, 723
MlyI GAGTC 1 cut(s) 541
MnlI CCTC 6 cut(s) 144, 169, 172, 588, 744, 843
MroXI GAANNNNTTC 1 cut(s) 201
MseI TTAA 7 cut(s) 158, 342, 456, 552, 557, 990, 1107
MslI CAYNNNNRTG 1 cut(s) 1071
MspA1I CMGCKG 2 cut(s) 23, 812
MvnI CGCG 1 cut(s) 820
MwoI GCNNNNNNNGC 2 cut(s) 214, 238
NdeII GATC 5 cut(s) 187, 363, 806, 858, 1183
NlaIII CATG 6 cut(s) 45, 81, 89, 532, 595, 1070
NlaIV GGNNCC 2 cut(s) 808, 1061
NmuCI GTSAC 1 cut(s) 432
PdmI GAANNNNTTC 1 cut(s) 201
PfeI GAWTC 1 cut(s) 672
PkrI GCNGC 4 cut(s) 22, 62, 761, 814
PleI GAGTC 1 cut(s) 540
PpsI GAGTC 1 cut(s) 540
PshBI ATTAAT 1 cut(s) 1107
PsiI TTATAA 2 cut(s) 299, 887
Psp124BI GAGCTC 1 cut(s) 723
PspN4I GGNNCC 2 cut(s) 808, 1061
PstNI CAGNNNCTG 1 cut(s) 910
PsuI RGATCY 1 cut(s) 806
PvuII CAGCTG 1 cut(s) 23
RsaI GTAC 3 cut(s) 441, 743, 1061
RsaNI GTAC 3 cut(s) 440, 742, 1060
RseI CAYNNNNRTG 1 cut(s) 1071
SacI GAGCTC 1 cut(s) 723
SaqAI TTAA 7 cut(s) 158, 342, 456, 552, 557, 990, 1107
SatI GCNGC 4 cut(s) 21, 61, 760, 813
Sau3AI GATC 5 cut(s) 187, 363, 806, 858, 1183
ScaI AGTACT 1 cut(s) 441
SchI GAGTC 1 cut(s) 541
SduI GDGCHC 2 cut(s) 85, 723
SfaNI GCATC 5 cut(s) 7, 511, 668, 862, 1126
SfcI CTRYAG 1 cut(s) 1155
SmiMI CAYNNNNRTG 1 cut(s) 1071
SsiI CCGC 4 cut(s) 61, 154, 810, 818
SspMI CTAG 1 cut(s) 414
SstI GAGCTC 1 cut(s) 723
StyI CCWWGG 1 cut(s) 940
TaaI ACNGT 7 cut(s) 371, 472, 770, 906, 1064, 1097, 1159
TaiI ACGT 1 cut(s) 939
TaqI TCGA 3 cut(s) 243, 311, 366
TatI WGTACW 2 cut(s) 439, 741
TauI GCSGC 1 cut(s) 63
TfiI GAWTC 1 cut(s) 672
Tru1I TTAA 7 cut(s) 158, 342, 456, 552, 557, 990, 1107
Tru9I TTAA 7 cut(s) 158, 342, 456, 552, 557, 990, 1107
TscAI CASTG 1 cut(s) 911
TseFI GTSAC 1 cut(s) 432
TseI GCWGC 3 cut(s) 20, 759, 812
Tsp45I GTSAC 1 cut(s) 432
TspDTI ATGAA 4 cut(s) 273, 571, 603, 728
TspGWI ACGGA 1 cut(s) 888
TspRI CASTG 1 cut(s) 911
VneI GTGCAC 1 cut(s) 81
VspI ATTAAT 1 cut(s) 1107
XapI RAATTY 2 cut(s) 106, 792
XmiI GTMKAC 2 cut(s) 385, 569
XmnI GAANNNNTTC 1 cut(s) 201
XspI CTAG 1 cut(s) 414
ZrmI AGTACT 1 cut(s) 441
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.