Rorug02G0381300

protein FAR1-RELATED SEQUENCE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0000143
Physical Location & Seq
Reverse (-)
48706716 .. 48707936
1221 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0381300.1

Sequence Viewer

Length: 756 bp
ATGAGCCAAAGAAGGGATAGGTATCCTCAGTATGCAAAAGCTGCCCTTTGCCAAGCATGTTACAGTGCTTTACGCCTCACAAAATCCCTGGAGAAGAAAGCCTCTGAACTTCTTGATGCCATACCTAAACCTTTTCTCTCACTTCACCTTCGTTTTGAGCCGGATATGGTAGCTTACAGTCAATGTGAATACCCATACCTAGCTCCTGCTTCTATTGAAGCCATCAAGGCAGCACAGGGAGATAGAAAGCCATGGACTGGAGAGCTTGCCCAAATTTGGAGGAAACGAGGAAAATGTCCTCTTACGCCTAATGAGACAGCCTTCATACTTCAAGTGCTATCCATCCCAACAAACACAAACATTTATCTGGCAGCTGGGGACGGTCTGATGGAAATTGAAGGATTAACATCTATTTACACCAATGTAGTTACCAAATCTAGCTTACTTAGTGGTGAGGATTTCAAAATGCATGGAAACACAAAAGCAGCATTGGATTACTATGTGTCTATTAACAGTGATTCATATATAGCAACATATTTTGGAAACATGGATAAGATGGTTGCAGCATTGCGAGCTTTTAATGGCTTGTACAAGACTCTTTTCTTAAGCAGAAGAGCTTTTGCTGAACTCACTTCTCGGGTTCCAGAGGTAAGGAATTGGCGCATGCACTGTGGAAGGCTCACAAAGAGGATTTTGTCATGGGAAGAGGATCTGCTTTGCCTGATTGCTTTTGTGAGTTCAAATTGTGATTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE

Protein Analysis

251

Amino Acids

28.4

Weight (kDa)

8.88

Isoelectric Point (pI)

45.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
O-FucT PF10250 21 - 193 3.9e-30 GDP-fucose protein O-fucosyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000143)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G76710 AT1G76710 AT1G76710 AT1G76710
fragaria_vesca FvH4_1g20063 FvH4_2g15231 FvH4_3g04011 FvH4_3g28681 FvH4_4g01411 FvH4_4g10181 FvH4_4g15922 FvH4_4g16651 FvH4_4g16652 FvH4_5g13892 FvH4_5g13893 FvH4_5g20623 FvH4_5g20623 FvH4_5g20623 FvH4_5g20623 FvH4_5g25511 FvH4_6g12551 FvH4_6g12552 FvH4_6g38841 FvH4_7g04391
malus_domestica MD05G1031300.v1.1 MD05G1031400.v1.1 MD05G1031500.v1.1 MD08G1164400.v1.1 MD10G1032900.v1.1 MD10G1033000.v1.1 MD10G1033100.v1.1
prunus_persica Prupe.3G240700_v2.0.a1 Prupe.7G144600_v2.0.a1 Prupe.8G038500_v2.0.a1 Prupe.8G038500_v2.0.a1
pyrus_communis pycom05g02250 pycom05g02260 pycom05g02270 pycom05g02280 pycom08g14160 pycom10g02100 pycom10g02110 pycom10g02130
rosa_chinensis RchiOBHm_Chr1g0329481 RchiOBHm_Chr1g0329491 RchiOBHm_Chr1g0341531 RchiOBHm_Chr3g0464811 RchiOBHm_Chr3g0494701 RchiOBHm_Chr3g0497501 RchiOBHm_Chr4g0385841 RchiOBHm_Chr5g0061181 RchiOBHm_Chr6g0263001 RchiOBHm_Chr7g0193111 RchiOBHm_Chr7g0206281 RchiOBHm_Chr7g0206311
rosa_laevigata RLG00000018908 RLG00000028528 RLG00000028803 RLG00000029882 RLG00000029883 RLG00000030361
rosa_multiflora Rmu_co8196328.1_g000001 Rmu_co8259135.1_g000001 Rmu_co8269185.1_g000001 Rmu_sc0000076.1_g000019 Rmu_sc0000311.1_g000007 Rmu_sc0000429.1_g000038 Rmu_sc0000429.1_g000039 Rmu_sc0000429.1_g000040 Rmu_sc0000511.1_g000005 Rmu_sc0000539.1_g000054 Rmu_sc0000566.1_g000039 Rmu_sc0000805.1_g000032 Rmu_sc0000870.1_g000073 Rmu_sc0000870.1_g000074 Rmu_sc0001010.1_g000018 Rmu_sc0001083.1_g000013 Rmu_sc0001114.1_g000011 Rmu_sc0001702.1_g000027 Rmu_sc0001779.1_g000012 Rmu_sc0002923.1_g000036 Rmu_sc0003242.1_g000011 Rmu_sc0003291.1_g000036 Rmu_sc0003393.1_g000012 Rmu_sc0003872.1_g000016 Rmu_sc0003872.1_g000017 Rmu_sc0003872.1_g000018 Rmu_sc0004084.1_g000020 Rmu_sc0004386.1_g000005 Rmu_sc0004622.1_g000005 Rmu_sc0004742.1_g000021 Rmu_sc0004755.1_g000020 Rmu_sc0004805.1_g000036 Rmu_sc0005065.1_g000006 Rmu_sc0005177.1_g000004 Rmu_sc0006373.1_g000003 Rmu_sc0006373.1_g000004 Rmu_sc0007121.1_g000002 Rmu_sc0007943.1_g000003 Rmu_sc0010368.1_g000006 Rmu_sc0010543.1_g000001 Rmu_sc0012591.1_g000006 Rmu_sc0013504.1_g000009 Rmu_sc0015025.1_g000001 Rmu_sc0016170.1_g000001 Rmu_sc0017156.1_g000001 Rmu_sc0026439.1_g000001
rosa_roxburghii Rroxscaffold_175G00432280 Rroxscaffold_1G00030190 Rroxscaffold_1G00030880 Rroxscaffold_2G00090520 Rroxscaffold_3G00227940 Rroxscaffold_3G00233400 Rroxscaffold_3G00238500 Rroxscaffold_3G00251650 Rroxscaffold_4G00301570 Rroxscaffold_4G00321040 Rroxscaffold_5G00350880 Rroxscaffold_7G00184400
rosa_rugosa Rorug01G0080800 Rorug01G0080900 Rorug01G0193900 Rorug02G0275900 Rorug02G0275900 Rorug02G0275900 Rorug02G0305400 Rorug02G0311800 Rorug02G0350400 Rorug02G0381300 Rorug03G0136700 Rorug03G0181900 Rorug03G0268000 Rorug04G0301600 Rorug05G0175100 Rorug05G0250700 Rorug05G0298200 Rorug05G0596000 Rorug06G0029500 Rorug07G0094300 Rorug07G0094300 Rorug07G0095400 Rorug07G0140100
rosa_samantha Rh1AG099200 Rh1AG190500 Rh1BG078900 Rh1BG079000 Rh1BG079100 Rh1CG084600 Rh1CG084700 Rh1CG095300 Rh1CG175900 Rh1DG103300 Rh1DG150400 Rh2AG079300 Rh2AG272400 Rh2AG464800 Rh2AG507400 Rh2DG078300 Rh2DG078400 Rh3CG206900 Rh3CG295400 Rh3DG206800 Rh3DG356200 Rh4CG071500 Rh4CG179200 Rh4DG064700 Rh5CG362400 Rh7AG212300 Rh7AG226200 Rh7BG222200
rosa_wichuraiana Rw0G009990 Rw0G011260 Rw0G011270 Rw0G012910 Rw0G013740 Rw1G007740 Rw1G013050 Rw1G014230 Rw2G014270 Rw3G012720 Rw3G028110 Rw4G006630 Rw4G015270 Rw4G016160 Rw4G031380 Rw5G011440 Rw5G029180 Rw5G048360 Rw5G048430 Rw5G048780 Rw6G005250 Rw6G006390 Rw7G002840 Rw7G014080 Rw7G019650 Rw7G032790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 257
AclWI GGATC 1 cut(s) 717
AcsI RAATTY 1 cut(s) 273
AfaI GTAC 1 cut(s) 590
AfiI CCNNNNNNNGG 3 cut(s) 13, 257, 276
AflII CTTAAG 1 cut(s) 604
AgsI TTSAA 5 cut(s) 218, 332, 398, 463, 741
AjnI CCWGG 1 cut(s) 87
AluBI AGCT 8 cut(s) 41, 173, 203, 265, 374, 441, 575, 617
AluI AGCT 8 cut(s) 41, 173, 203, 265, 374, 441, 575, 617
Alw26I GTCTC 1 cut(s) 308
AlwI GGATC 1 cut(s) 717
Ama87I CYCGRG 1 cut(s) 636
ApeKI GCWGC 5 cut(s) 41, 230, 371, 485, 563
ApoI RAATTY 1 cut(s) 273
AspLEI GCGC 1 cut(s) 663
AsuHPI GGTGA 2 cut(s) 137, 464
AvaI CYCGRG 1 cut(s) 636
BbvI GCAGC 5 cut(s) 28, 242, 383, 497, 575
BccI CCATC 4 cut(s) 230, 350, 382, 550
BciT130I CCWGG 1 cut(s) 89
BciVI GTATCC 1 cut(s) 33
BcoDI GTCTC 1 cut(s) 308
BfaI CTAG 2 cut(s) 200, 438
BfrI CTTAAG 1 cut(s) 604
BfuI GTATCC 1 cut(s) 33
BglI GCCNNNNNGGC 1 cut(s) 227
BisI GCNGC 5 cut(s) 42, 231, 372, 486, 564
BlsI GCNGC 5 cut(s) 43, 232, 373, 487, 565
Bme1390I CCNGG 1 cut(s) 89
BmeT110I CYCGRG 1 cut(s) 636
BmiI GGNNCC 1 cut(s) 642
BmrFI CCNGG 1 cut(s) 89
BmsI GCATC 1 cut(s) 106
BpmI CTGGAG 2 cut(s) 110, 279
BsaBI GATNNNNATC 2 cut(s) 21, 406
BsaJI CCNNGG 2 cut(s) 87, 251
Bsc4I CCNNNNNNNGG 3 cut(s) 13, 257, 276
Bse1I ACTGG 1 cut(s) 262
Bse3DI GCAATG 1 cut(s) 566
Bse8I GATNNNNATC 2 cut(s) 21, 406
BseBI CCWGG 1 cut(s) 89
BseDI CCNNGG 2 cut(s) 87, 251
BseGI GGATG 1 cut(s) 342
BseJI GATNNNNATC 2 cut(s) 21, 406
BseLI CCNNNNNNNGG 3 cut(s) 13, 257, 276
BseMI GCAATG 1 cut(s) 566
BseMII CTCAG 1 cut(s) 41
BseNI ACTGG 1 cut(s) 262
BseXI GCAGC 5 cut(s) 28, 242, 383, 497, 575
BseYI CCCAGC 1 cut(s) 374
BsiHKCI CYCGRG 1 cut(s) 636
BsiSI CCGG 1 cut(s) 161
BslFI GGGAC 1 cut(s) 392
BslI CCNNNNNNNGG 3 cut(s) 13, 257, 276
BsmAI GTCTC 1 cut(s) 308
BsmFI GGGAC 1 cut(s) 392
BsoBI CYCGRG 1 cut(s) 636
Bsp1407I TGTACA 1 cut(s) 588
Bsp143I GATC 1 cut(s) 709
Bsp19I CCATGG 1 cut(s) 251
BspCNI CTCAG 1 cut(s) 40
BspLI GGNNCC 1 cut(s) 642
BspPI GGATC 1 cut(s) 717
BspQI GCTCTTC 1 cut(s) 607
BspTI CTTAAG 1 cut(s) 604
BsrDI GCAATG 1 cut(s) 566
BsrGI TGTACA 1 cut(s) 588
BsrI ACTGG 1 cut(s) 262
BssECI CCNNGG 2 cut(s) 87, 251
BssMI GATC 1 cut(s) 709
BssT1I CCWWGG 1 cut(s) 251
Bst2UI CCWGG 1 cut(s) 89
Bst4CI ACNGT 5 cut(s) 65, 179, 383, 515, 671
Bst6I CTCTTC 2 cut(s) 607, 699
BstAFI CTTAAG 1 cut(s) 604
BstAPI GCANNNNNTGC 1 cut(s) 41
BstAUI TGTACA 1 cut(s) 588
BstC8I GCNNGC 3 cut(s) 267, 573, 665
BstDEI CTNAG 2 cut(s) 27, 446
BstDSI CCRYGG 1 cut(s) 251
BstF5I GGATG 1 cut(s) 342
BstHHI GCGC 1 cut(s) 663
BstKTI GATC 1 cut(s) 712
BstMAI GTCTC 1 cut(s) 308
BstMBI GATC 1 cut(s) 709
BstMWI GCNNNNNNNGC 3 cut(s) 41, 227, 572
BstNI CCWGG 1 cut(s) 89
BstNSI RCATGY 2 cut(s) 60, 667
BstSCI CCNGG 1 cut(s) 87
BstV1I GCAGC 5 cut(s) 28, 242, 383, 497, 575
BstX2I RGATCY 1 cut(s) 709
BstYI RGATCY 1 cut(s) 709
BsuI GTATCC 1 cut(s) 33
BtgI CCRYGG 1 cut(s) 251
BtsCI GGATG 1 cut(s) 342
BtsIMutI CAGTG 3 cut(s) 70, 520, 667
Cac8I GCNNGC 3 cut(s) 267, 573, 665
CfoI GCGC 1 cut(s) 663
Csp6I GTAC 1 cut(s) 589
CviAII CATG 6 cut(s) 57, 252, 470, 547, 664, 699
CviQI GTAC 1 cut(s) 589
DdeI CTNAG 2 cut(s) 27, 446
DpnI GATC 1 cut(s) 711
DpnII GATC 1 cut(s) 709
Eam1104I CTCTTC 2 cut(s) 607, 699
EarI CTCTTC 2 cut(s) 607, 699
Eco130I CCWWGG 1 cut(s) 251
Eco88I CYCGRG 1 cut(s) 636
EcoRII CCWGG 1 cut(s) 87
EcoT14I CCWWGG 1 cut(s) 251
EcoT22I ATGCAT 1 cut(s) 471
ErhI CCWWGG 1 cut(s) 251
FaeI CATG 6 cut(s) 60, 255, 473, 550, 667, 702
FalI AAGNNNNNCTT 2 cut(s) 30, 62
FaqI GGGAC 1 cut(s) 392
FatI CATG 6 cut(s) 56, 251, 469, 546, 663, 698
Fnu4HI GCNGC 5 cut(s) 42, 231, 372, 486, 564
FokI GGATG 1 cut(s) 329
Fsp4HI GCNGC 5 cut(s) 42, 231, 372, 486, 564
FspBI CTAG 2 cut(s) 200, 438
GlaI GCGC 1 cut(s) 662
GluI GCNGC 5 cut(s) 42, 231, 372, 486, 564
GsaI CCCAGC 1 cut(s) 378
GsuI CTGGAG 2 cut(s) 110, 279
HapII CCGG 1 cut(s) 161
HhaI GCGC 1 cut(s) 663
Hin1II CATG 6 cut(s) 60, 255, 473, 550, 667, 702
Hin6I GCGC 1 cut(s) 661
HinP1I GCGC 1 cut(s) 661
HinfI GANTC 2 cut(s) 518, 595
HpaII CCGG 1 cut(s) 161
HphI GGTGA 2 cut(s) 137, 464
Hpy188I TCNGA 3 cut(s) 106, 387, 755
Hpy188III TCNNGA 2 cut(s) 113, 644
HpyAV CCTTC 5 cut(s) 6, 158, 331, 392, 669
HpyCH4III ACNGT 5 cut(s) 65, 179, 383, 515, 671
HpyCH4V TGCA 4 cut(s) 35, 469, 563, 667
HpyF10VI GCNNNNNNNGC 3 cut(s) 41, 227, 572
HpyF3I CTNAG 2 cut(s) 27, 446
Hsp92II CATG 6 cut(s) 60, 255, 473, 550, 667, 702
HspAI GCGC 1 cut(s) 661
Kzo9I GATC 1 cut(s) 709
LguI GCTCTTC 1 cut(s) 607
LmnI GCTCC 1 cut(s) 208
Lsp1109I GCAGC 5 cut(s) 28, 242, 383, 497, 575
LweI GCATC 1 cut(s) 106
MaeI CTAG 2 cut(s) 200, 438
MaeIII GTNAC 2 cut(s) 59, 427
MalI GATC 1 cut(s) 711
MboI GATC 1 cut(s) 709
MboII GAAGA 3 cut(s) 106, 624, 716
MflI RGATCY 1 cut(s) 709
MluCI AATT 4 cut(s) 273, 393, 655, 742
MlyI GAGTC 1 cut(s) 589
Mph1103I ATGCAT 1 cut(s) 471
MseI TTAA 4 cut(s) 404, 510, 579, 605
MspA1I CMGCKG 1 cut(s) 374
MspCI CTTAAG 1 cut(s) 604
MspI CCGG 1 cut(s) 161
MspR9I CCNGG 1 cut(s) 89
MvaI CCWGG 1 cut(s) 89
MwoI GCNNNNNNNGC 3 cut(s) 41, 227, 572
NcoI CCATGG 1 cut(s) 251
NdeII GATC 1 cut(s) 709
NlaIII CATG 6 cut(s) 60, 255, 473, 550, 667, 702
NlaIV GGNNCC 1 cut(s) 642
NsiI ATGCAT 1 cut(s) 471
NspI RCATGY 2 cut(s) 60, 667
PaeI GCATGC 1 cut(s) 667
PciSI GCTCTTC 1 cut(s) 607
PfeI GAWTC 1 cut(s) 518
PflMI CCANNNNNTGG 1 cut(s) 257
PkrI GCNGC 5 cut(s) 43, 232, 373, 487, 565
PleI GAGTC 1 cut(s) 589
PpsI GAGTC 1 cut(s) 589
Psp6I CCWGG 1 cut(s) 87
PspFI CCCAGC 1 cut(s) 374
PspGI CCWGG 1 cut(s) 87
PspN4I GGNNCC 1 cut(s) 642
PsuI RGATCY 1 cut(s) 709
PvuII CAGCTG 1 cut(s) 374
RsaI GTAC 1 cut(s) 590
RsaNI GTAC 1 cut(s) 589
SapI GCTCTTC 1 cut(s) 607
SaqAI TTAA 4 cut(s) 404, 510, 579, 605
SatI GCNGC 5 cut(s) 42, 231, 372, 486, 564
Sau3AI GATC 1 cut(s) 709
SchI GAGTC 1 cut(s) 589
ScrFI CCNGG 1 cut(s) 89
SfaNI GCATC 1 cut(s) 106
SmlI CTYRAG 1 cut(s) 604
SmoI CTYRAG 1 cut(s) 604
SphI GCATGC 1 cut(s) 667
Sse9I AATT 4 cut(s) 273, 393, 655, 742
SspMI CTAG 2 cut(s) 200, 438
StyD4I CCNGG 1 cut(s) 87
StyI CCWWGG 1 cut(s) 251
TaaI ACNGT 5 cut(s) 65, 179, 383, 515, 671
TasI AATT 4 cut(s) 273, 393, 655, 742
TatI WGTACW 1 cut(s) 588
TfiI GAWTC 1 cut(s) 518
Tru1I TTAA 4 cut(s) 404, 510, 579, 605
Tru9I TTAA 4 cut(s) 404, 510, 579, 605
TscAI CASTG 3 cut(s) 70, 520, 674
TseI GCWGC 5 cut(s) 41, 230, 371, 485, 563
TspDTI ATGAA 2 cut(s) 313, 510
TspRI CASTG 3 cut(s) 70, 520, 674
Van91I CCANNNNNTGG 1 cut(s) 257
Vha464I CTTAAG 1 cut(s) 604
XapI RAATTY 1 cut(s) 273
XceI RCATGY 2 cut(s) 60, 667
XspI CTAG 2 cut(s) 200, 438
Zsp2I ATGCAT 1 cut(s) 471
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.