FvH4_5g13893

protein FAR1-RELATED SEQUENCE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0000143
Physical Location & Seq
Reverse (-)
7858915 .. 7860117
1203 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g13893.t1

Sequence Viewer

Length: 993 bp
ATGCATAACCATCATGCTGCGAAGTATCATGAAGGACATTCCTATTTGGGACGGTTAACCAAGGAAGAAAATAATTTGTTGGTTAATATGTCAAAGAACTTGGTCAGTCCGAAAGAAATATTATACACTTTGAAGCAAAATGACCCACTTAATTCAAGCACTATGAAGACAATCTACAATGCTCGACAATTTCATAGGGTGATTGAAAAAGCTGGTAGGTCAGAGATGCAAATATTGCTAAACAATTTGCAGGAAAACAATTATGTTGAGTGGCATAGGAGCTACGGTACAGAAAACATTGTGAGTGACTTGTTTTGGACCCATCCTGATAGTATTGTGGGGGTGACATCTACAGAATTAACATTCCATGCCGCATTTGTGTACATCCATGCTGAGAAGGAAGAAAATTATGTATGGGCTTTATCTAGATTGAAGAGTGTGATGAATGAAGACTACCTTCCAAGTGTTATTGTTACCGACAGAGAGCTAGCACTCATGAATGCCGTTCGTAGGGTCTTCCCATCTGCCCAACACTTACTATGTAGGTGGCACATTAATAAGGCAATGTTGGGAAAGTGCAGAAGGCTTTTTGATGACCAAGAGAAGTTTAAAAAGTTCATGAAGTCATGGAACACATTGGTCTTTTCAGATACAATACTTGCCTATGAAAGACATTTACATGAGTTGGAAAGAGACTACCAAAAATATGACGAAGTACTAGCTTATGTGAAAGGCATTTGGTTGAATGAATATAAAGAGAGATTTGTTGAAGCCTGGACCAACAATTATATGCATCTTGGAACGATGACTTTGAACAGGGCAGAAAGTTCTCACTCAAAATTGAAACGATATTTGATGTCTAGTTTGTGCAACTTTGGTACATCTTGGAAAACGATTCATGCCTTATTGGTTTTGCAACACATGGAAATAAAAGCTTCATTTGAGAAAAGTCTGATATTTGTCCGACATGAGTTCATGAAGAATCTGTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE

Protein Analysis

331

Amino Acids

39.19

Weight (kDa)

8.87

Isoelectric Point (pI)

45.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MULE PF10551 111 - 187 8.3e-17 MULE transposase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000143)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G76710 AT1G76710 AT1G76710 AT1G76710
fragaria_vesca FvH4_1g20063 FvH4_2g15231 FvH4_3g04011 FvH4_3g28681 FvH4_4g01411 FvH4_4g10181 FvH4_4g15922 FvH4_4g16651 FvH4_4g16652 FvH4_5g13892 FvH4_5g13893 FvH4_5g20623 FvH4_5g20623 FvH4_5g20623 FvH4_5g20623 FvH4_5g25511 FvH4_6g12551 FvH4_6g12552 FvH4_6g38841 FvH4_7g04391
malus_domestica MD05G1031300.v1.1 MD05G1031400.v1.1 MD05G1031500.v1.1 MD08G1164400.v1.1 MD10G1032900.v1.1 MD10G1033000.v1.1 MD10G1033100.v1.1
prunus_persica Prupe.3G240700_v2.0.a1 Prupe.7G144600_v2.0.a1 Prupe.8G038500_v2.0.a1 Prupe.8G038500_v2.0.a1
pyrus_communis pycom05g02250 pycom05g02260 pycom05g02270 pycom05g02280 pycom08g14160 pycom10g02100 pycom10g02110 pycom10g02130
rosa_chinensis RchiOBHm_Chr1g0329481 RchiOBHm_Chr1g0329491 RchiOBHm_Chr1g0341531 RchiOBHm_Chr3g0464811 RchiOBHm_Chr3g0494701 RchiOBHm_Chr3g0497501 RchiOBHm_Chr4g0385841 RchiOBHm_Chr5g0061181 RchiOBHm_Chr6g0263001 RchiOBHm_Chr7g0193111 RchiOBHm_Chr7g0206281 RchiOBHm_Chr7g0206311
rosa_laevigata RLG00000018908 RLG00000028528 RLG00000028803 RLG00000029882 RLG00000029883 RLG00000030361
rosa_multiflora Rmu_co8196328.1_g000001 Rmu_co8259135.1_g000001 Rmu_co8269185.1_g000001 Rmu_sc0000076.1_g000019 Rmu_sc0000311.1_g000007 Rmu_sc0000429.1_g000038 Rmu_sc0000429.1_g000039 Rmu_sc0000429.1_g000040 Rmu_sc0000511.1_g000005 Rmu_sc0000539.1_g000054 Rmu_sc0000566.1_g000039 Rmu_sc0000805.1_g000032 Rmu_sc0000870.1_g000073 Rmu_sc0000870.1_g000074 Rmu_sc0001010.1_g000018 Rmu_sc0001083.1_g000013 Rmu_sc0001114.1_g000011 Rmu_sc0001702.1_g000027 Rmu_sc0001779.1_g000012 Rmu_sc0002923.1_g000036 Rmu_sc0003242.1_g000011 Rmu_sc0003291.1_g000036 Rmu_sc0003393.1_g000012 Rmu_sc0003872.1_g000016 Rmu_sc0003872.1_g000017 Rmu_sc0003872.1_g000018 Rmu_sc0004084.1_g000020 Rmu_sc0004386.1_g000005 Rmu_sc0004622.1_g000005 Rmu_sc0004742.1_g000021 Rmu_sc0004755.1_g000020 Rmu_sc0004805.1_g000036 Rmu_sc0005065.1_g000006 Rmu_sc0005177.1_g000004 Rmu_sc0006373.1_g000003 Rmu_sc0006373.1_g000004 Rmu_sc0007121.1_g000002 Rmu_sc0007943.1_g000003 Rmu_sc0010368.1_g000006 Rmu_sc0010543.1_g000001 Rmu_sc0012591.1_g000006 Rmu_sc0013504.1_g000009 Rmu_sc0015025.1_g000001 Rmu_sc0016170.1_g000001 Rmu_sc0017156.1_g000001 Rmu_sc0026439.1_g000001
rosa_roxburghii Rroxscaffold_175G00432280 Rroxscaffold_1G00030190 Rroxscaffold_1G00030880 Rroxscaffold_2G00090520 Rroxscaffold_3G00227940 Rroxscaffold_3G00233400 Rroxscaffold_3G00238500 Rroxscaffold_3G00251650 Rroxscaffold_4G00301570 Rroxscaffold_4G00321040 Rroxscaffold_5G00350880 Rroxscaffold_7G00184400
rosa_rugosa Rorug01G0080800 Rorug01G0080900 Rorug01G0193900 Rorug02G0275900 Rorug02G0275900 Rorug02G0275900 Rorug02G0305400 Rorug02G0311800 Rorug02G0350400 Rorug02G0381300 Rorug03G0136700 Rorug03G0181900 Rorug03G0268000 Rorug04G0301600 Rorug05G0175100 Rorug05G0250700 Rorug05G0298200 Rorug05G0596000 Rorug06G0029500 Rorug07G0094300 Rorug07G0094300 Rorug07G0095400 Rorug07G0140100
rosa_samantha Rh1AG099200 Rh1AG190500 Rh1BG078900 Rh1BG079000 Rh1BG079100 Rh1CG084600 Rh1CG084700 Rh1CG095300 Rh1CG175900 Rh1DG103300 Rh1DG150400 Rh2AG079300 Rh2AG272400 Rh2AG464800 Rh2AG507400 Rh2DG078300 Rh2DG078400 Rh3CG206900 Rh3CG295400 Rh3DG206800 Rh3DG356200 Rh4CG071500 Rh4CG179200 Rh4DG064700 Rh5CG362400 Rh7AG212300 Rh7AG226200 Rh7BG222200
rosa_wichuraiana Rw0G009990 Rw0G011260 Rw0G011270 Rw0G012910 Rw0G013740 Rw1G007740 Rw1G013050 Rw1G014230 Rw2G014270 Rw3G012720 Rw3G028110 Rw4G006630 Rw4G015270 Rw4G016160 Rw4G031380 Rw5G011440 Rw5G029180 Rw5G048360 Rw5G048430 Rw5G048780 Rw6G005250 Rw6G006390 Rw7G002840 Rw7G014080 Rw7G019650 Rw7G032790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 372
AfaI GTAC 4 cut(s) 289, 383, 717, 880
AfiI CCNNNNNNNGG 1 cut(s) 510
AgsI TTSAA 8 cut(s) 133, 156, 206, 433, 745, 770, 814, 844
AjnI CCWGG 1 cut(s) 773
AluBI AGCT 5 cut(s) 212, 282, 487, 722, 935
AluI AGCT 5 cut(s) 212, 282, 487, 722, 935
Alw26I GTCTC 1 cut(s) 687
ApeKI GCWGC 1 cut(s) 17
AseI ATTAAT 1 cut(s) 555
AspS9I GGNCC 2 cut(s) 318, 777
AsuHPI GGTGA 2 cut(s) 211, 355
AsuNHI GCTAGC 1 cut(s) 487
AvaII GGWCC 2 cut(s) 318, 777
BarI GAAGNNNNNNTAC 2 cut(s) 158, 190
BbsI GAAGAC 3 cut(s) 173, 456, 508
BbvI GCAGC 1 cut(s) 4
BccI CCATC 3 cut(s) 18, 330, 529
BceAI ACGGC 1 cut(s) 488
BciT130I CCWGG 1 cut(s) 775
BcoDI GTCTC 1 cut(s) 687
BfaI CTAG 4 cut(s) 426, 488, 719, 861
BfmI CTRYAG 1 cut(s) 351
BisI GCNGC 2 cut(s) 18, 372
BlsI GCNGC 2 cut(s) 19, 373
BmcAI AGTACT 1 cut(s) 717
Bme1390I CCNGG 1 cut(s) 775
Bme18I GGWCC 2 cut(s) 318, 777
BmgT120I GGNCC 2 cut(s) 318, 777
BmiI GGNNCC 1 cut(s) 320
BmrFI CCNGG 1 cut(s) 775
BmsI GCATC 2 cut(s) 216, 802
BmtI GCTAGC 1 cut(s) 491
BpiI GAAGAC 3 cut(s) 173, 456, 508
BsaJI CCNNGG 1 cut(s) 60
BsaXI ACNNNNNCTCC 2 cut(s) 271, 301
Bsc4I CCNNNNNNNGG 1 cut(s) 510
Bse3DI GCAATG 1 cut(s) 570
BseBI CCWGG 1 cut(s) 775
BseDI CCNNGG 1 cut(s) 60
BseGI GGATG 2 cut(s) 322, 384
BseLI CCNNNNNNNGG 1 cut(s) 510
BseMI GCAATG 1 cut(s) 570
BseMII CTCAG 1 cut(s) 384
BseXI GCAGC 1 cut(s) 4
BsgI GTGCAG 1 cut(s) 598
BslFI GGGAC 1 cut(s) 63
BslI CCNNNNNNNGG 1 cut(s) 510
BsmAI GTCTC 1 cut(s) 687
BsmFI GGGAC 1 cut(s) 63
BsmI GAATGC 1 cut(s) 505
Bsp1407I TGTACA 1 cut(s) 381
BspACI CCGC 1 cut(s) 372
BspCNI CTCAG 1 cut(s) 385
BspHI TCATGA 4 cut(s) 28, 495, 618, 975
BspLI GGNNCC 1 cut(s) 320
BspOI GCTAGC 1 cut(s) 491
BsrDI GCAATG 1 cut(s) 570
BsrGI TGTACA 1 cut(s) 381
BssECI CCNNGG 1 cut(s) 60
BssT1I CCWWGG 1 cut(s) 60
Bst2UI CCWGG 1 cut(s) 775
Bst4CI ACNGT 2 cut(s) 54, 287
Bst6I CTCTTC 1 cut(s) 428
BstAPI GCANNNNNTGC 1 cut(s) 235
BstAUI TGTACA 1 cut(s) 381
BstC8I GCNNGC 1 cut(s) 489
BstDEI CTNAG 1 cut(s) 393
BstF5I GGATG 2 cut(s) 322, 384
BstMAI GTCTC 1 cut(s) 687
BstMWI GCNNNNNNNGC 1 cut(s) 235
BstNI CCWGG 1 cut(s) 775
BstSCI CCNGG 1 cut(s) 773
BstSFI CTRYAG 1 cut(s) 351
BstV1I GCAGC 1 cut(s) 4
BstV2I GAAGAC 3 cut(s) 173, 456, 508
BtsCI GGATG 2 cut(s) 322, 384
Cac8I GCNNGC 1 cut(s) 489
CciI TCATGA 4 cut(s) 28, 495, 618, 975
Cfr13I GGNCC 2 cut(s) 318, 777
Csp6I GTAC 4 cut(s) 288, 382, 716, 879
CviJI RGCY 8 cut(s) 212, 282, 419, 487, 586, 722, 773, 935
CviKI_1 RGCY 8 cut(s) 212, 282, 419, 487, 586, 722, 773, 935
CviQI GTAC 4 cut(s) 288, 382, 716, 879
DdeI CTNAG 1 cut(s) 393
DraI TTTAAA 1 cut(s) 610
Eam1104I CTCTTC 1 cut(s) 428
EarI CTCTTC 1 cut(s) 428
Eco130I CCWWGG 1 cut(s) 60
Eco47I GGWCC 2 cut(s) 318, 777
EcoRII CCWGG 1 cut(s) 773
EcoT14I CCWWGG 1 cut(s) 60
EcoT22I ATGCAT 2 cut(s) 6, 795
ErhI CCWWGG 1 cut(s) 60
FalI AAGNNNNNCTT 2 cut(s) 441, 473
FaqI GGGAC 1 cut(s) 63
Fnu4HI GCNGC 2 cut(s) 18, 372
FokI GGATG 2 cut(s) 309, 371
Fsp4HI GCNGC 2 cut(s) 18, 372
FspBI CTAG 4 cut(s) 426, 488, 719, 861
GluI GCNGC 2 cut(s) 18, 372
HincII GTYRAC 1 cut(s) 57
HindII GTYRAC 1 cut(s) 57
HindIII AAGCTT 1 cut(s) 933
HinfI GANTC 2 cut(s) 895, 982
HpaI GTTAAC 1 cut(s) 57
HphI GGTGA 2 cut(s) 211, 355
Hpy166II GTNNAC 2 cut(s) 57, 382
Hpy188I TCNGA 5 cut(s) 111, 223, 649, 954, 965
Hpy188III TCNNGA 6 cut(s) 29, 326, 426, 496, 619, 976
Hpy8I GTNNAC 2 cut(s) 57, 382
HpyAV CCTTC 4 cut(s) 26, 391, 467, 576
HpyCH4III ACNGT 2 cut(s) 54, 287
HpyCH4V TGCA 7 cut(s) 4, 229, 250, 579, 793, 870, 916
HpyF10VI GCNNNNNNNGC 1 cut(s) 235
HpyF3I CTNAG 1 cut(s) 393
KspAI GTTAAC 1 cut(s) 57
LmnI GCTCC 1 cut(s) 279
LpnPI CCDG 6 cut(s) 198, 236, 339, 760, 787, 802
Lsp1109I GCAGC 1 cut(s) 4
LweI GCATC 2 cut(s) 216, 802
MaeI CTAG 4 cut(s) 426, 488, 719, 861
MaeIII GTNAC 3 cut(s) 305, 343, 472
MboII GAAGA 7 cut(s) 77, 178, 413, 445, 461, 508, 991
MluCI AATT 9 cut(s) 73, 151, 188, 244, 259, 356, 406, 784, 839
MmeI TCCRAC 2 cut(s) 666, 988
Mph1103I ATGCAT 2 cut(s) 6, 795
MseI TTAA 6 cut(s) 56, 84, 150, 359, 555, 609
MslI CAYNNNNRTG 1 cut(s) 678
MspR9I CCNGG 1 cut(s) 775
Mva1269I GAATGC 1 cut(s) 505
MvaI CCWGG 1 cut(s) 775
MwoI GCNNNNNNNGC 1 cut(s) 235
NheI GCTAGC 1 cut(s) 487
NlaIV GGNNCC 1 cut(s) 320
NmuCI GTSAC 2 cut(s) 305, 343
NsiI ATGCAT 2 cut(s) 6, 795
PagI TCATGA 4 cut(s) 28, 495, 618, 975
PctI GAATGC 1 cut(s) 505
PfeI GAWTC 2 cut(s) 895, 982
PkrI GCNGC 2 cut(s) 19, 373
PshBI ATTAAT 1 cut(s) 555
Psp6I CCWGG 1 cut(s) 773
PspGI CCWGG 1 cut(s) 773
PspN4I GGNNCC 1 cut(s) 320
PspPI GGNCC 2 cut(s) 318, 777
RsaI GTAC 4 cut(s) 289, 383, 717, 880
RsaNI GTAC 4 cut(s) 288, 382, 716, 879
RseI CAYNNNNRTG 1 cut(s) 678
SaqAI TTAA 6 cut(s) 56, 84, 150, 359, 555, 609
SatI GCNGC 2 cut(s) 18, 372
Sau96I GGNCC 2 cut(s) 318, 777
ScaI AGTACT 1 cut(s) 717
ScrFI CCNGG 1 cut(s) 775
SetI ASST 8 cut(s) 214, 221, 284, 459, 489, 548, 724, 937
SfaNI GCATC 2 cut(s) 216, 802
SfcI CTRYAG 1 cut(s) 351
SinI GGWCC 2 cut(s) 318, 777
SmiMI CAYNNNNRTG 1 cut(s) 678
Sse9I AATT 9 cut(s) 73, 151, 188, 244, 259, 356, 406, 784, 839
SsiI CCGC 1 cut(s) 372
SspI AATATT 2 cut(s) 120, 234
SspMI CTAG 4 cut(s) 426, 488, 719, 861
StyD4I CCNGG 1 cut(s) 773
StyI CCWWGG 1 cut(s) 60
TaaI ACNGT 2 cut(s) 54, 287
TaqI TCGA 1 cut(s) 184
TasI AATT 9 cut(s) 73, 151, 188, 244, 259, 356, 406, 784, 839
TatI WGTACW 2 cut(s) 381, 715
TauI GCSGC 1 cut(s) 374
TfiI GAWTC 2 cut(s) 895, 982
Tru1I TTAA 6 cut(s) 56, 84, 150, 359, 555, 609
Tru9I TTAA 6 cut(s) 56, 84, 150, 359, 555, 609
TseFI GTSAC 2 cut(s) 305, 343
TseI GCWGC 1 cut(s) 17
Tsp45I GTSAC 2 cut(s) 305, 343
VpaK11BI GGWCC 2 cut(s) 318, 777
VspI ATTAAT 1 cut(s) 555
XbaI TCTAGA 1 cut(s) 425
XspI CTAG 4 cut(s) 426, 488, 719, 861
ZrmI AGTACT 1 cut(s) 717
Zsp2I ATGCAT 2 cut(s) 6, 795
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.