FvH4_4g10181

protein FAR1-RELATED SEQUENCE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0000143
Physical Location & Seq
Forward (+)
13191273 .. 13192477
1205 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g10181.t1

Sequence Viewer

Length: 1095 bp
ATGGAGGAAGATCCAATGGTTGCTGGGTTGCATATTTCTATGTCTTCAGATGGTTTGGAGGAAGACTTACATTCTAATCACCCATCTAGTCTCATTGAAGGCCCCATTGTCAATGGAAAGTATTATCTGTTATCACTTTTATCATGCCCCTCCGTGACTAATATTGCGAATGAATTCCTCTCATTATCGGTGAAGTTGTTTGAAACTCGAGAAGATCTTCTGAGTGTTGTTCGTAAAATTGGGAAGTCACAAGGGTATGCTATGGTAATCAAACGATCCAAAAGGAGTAAAGGTGGTGATAGACGTTATGTGCTTATTGGTTGTGATAGAGGTGGTTCTTATCGAACCTCTCTACACTTGAGGAGAAGAAAAAAAAATTCAGCTTCTCGTTTGATAGATTGCCCTTTCAAAATTGTGGGAAGAAGTACAGCTGAAGGGTTGTGGAAGGTTGAGATAATTAGCTTATTTCATAATCATGATCCTTCCATTGATATGGCCGGACATCCATATTCTCGTAGATTTACCAAAGAGGAAGCTATACAAGTTGAACAAATGAGTAAGGCTGGCATAAAACCACGTCAGATTCTCTTTTCCCTTCGCCAAAATAATCCTGATCTTCTTGCAGTTTCAAGAAATATATATAGCAAGACAGCTCAATTTAGGAAGGAAAGTCTAGGTGGGCGTTCAATTATTCAAGCATTATTAGATGAGCTTGGTGGTGCTAGTTTTTATCATATTGTCAAATATGATCATTCTGGTCATTTGACTCATTTGTTCTTTGCTCATCCGACATCCATTGAGTTGACTAAAAGCTACTCGAGTGTCTTTGTAATGGATTGTACTTATAAGACAAATAAGTATAAGATGCCATTACTTGAGATTATAGGAGTGTCGAGTTTCAACACTTCCTTCTATTCGTGTTTTGTTTTCATGCAAAAAGAGGAACAACAGGACTATCAGTGGGCTCTTGAAATGTTTAGTAAGTTGTTGGGAGATGGTGATCATCCATTGGCGATTATAACTGACAGGGAGTTGGCATTGATGAAAGCAATTCAGATTGTGTTTCCGGGGACTCCTAATCTTTTATGCATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE

Protein Analysis

365

Amino Acids

41.15

Weight (kDa)

8.96

Isoelectric Point (pI)

54.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAR1 PF03101 81 - 160 5.2e-06 FAR1 DNA-binding domain
ZSWIM1-3_RNaseH-like PF21056 248 - 358 4e-12 Zinc finger SWIM domain-containing protein 1/3, RNaseH-like domain
MULE PF10551 275 - 364 1.6e-21 MULE transposase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000143)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G76710 AT1G76710 AT1G76710 AT1G76710
fragaria_vesca FvH4_1g20063 FvH4_2g15231 FvH4_3g04011 FvH4_3g28681 FvH4_4g01411 FvH4_4g10181 FvH4_4g15922 FvH4_4g16651 FvH4_4g16652 FvH4_5g13892 FvH4_5g13893 FvH4_5g20623 FvH4_5g20623 FvH4_5g20623 FvH4_5g20623 FvH4_5g25511 FvH4_6g12551 FvH4_6g12552 FvH4_6g38841 FvH4_7g04391
malus_domestica MD05G1031300.v1.1 MD05G1031400.v1.1 MD05G1031500.v1.1 MD08G1164400.v1.1 MD10G1032900.v1.1 MD10G1033000.v1.1 MD10G1033100.v1.1
prunus_persica Prupe.3G240700_v2.0.a1 Prupe.7G144600_v2.0.a1 Prupe.8G038500_v2.0.a1 Prupe.8G038500_v2.0.a1
pyrus_communis pycom05g02250 pycom05g02260 pycom05g02270 pycom05g02280 pycom08g14160 pycom10g02100 pycom10g02110 pycom10g02130
rosa_chinensis RchiOBHm_Chr1g0329481 RchiOBHm_Chr1g0329491 RchiOBHm_Chr1g0341531 RchiOBHm_Chr3g0464811 RchiOBHm_Chr3g0494701 RchiOBHm_Chr3g0497501 RchiOBHm_Chr4g0385841 RchiOBHm_Chr5g0061181 RchiOBHm_Chr6g0263001 RchiOBHm_Chr7g0193111 RchiOBHm_Chr7g0206281 RchiOBHm_Chr7g0206311
rosa_laevigata RLG00000018908 RLG00000028528 RLG00000028803 RLG00000029882 RLG00000029883 RLG00000030361
rosa_multiflora Rmu_co8196328.1_g000001 Rmu_co8259135.1_g000001 Rmu_co8269185.1_g000001 Rmu_sc0000076.1_g000019 Rmu_sc0000311.1_g000007 Rmu_sc0000429.1_g000038 Rmu_sc0000429.1_g000039 Rmu_sc0000429.1_g000040 Rmu_sc0000511.1_g000005 Rmu_sc0000539.1_g000054 Rmu_sc0000566.1_g000039 Rmu_sc0000805.1_g000032 Rmu_sc0000870.1_g000073 Rmu_sc0000870.1_g000074 Rmu_sc0001010.1_g000018 Rmu_sc0001083.1_g000013 Rmu_sc0001114.1_g000011 Rmu_sc0001702.1_g000027 Rmu_sc0001779.1_g000012 Rmu_sc0002923.1_g000036 Rmu_sc0003242.1_g000011 Rmu_sc0003291.1_g000036 Rmu_sc0003393.1_g000012 Rmu_sc0003872.1_g000016 Rmu_sc0003872.1_g000017 Rmu_sc0003872.1_g000018 Rmu_sc0004084.1_g000020 Rmu_sc0004386.1_g000005 Rmu_sc0004622.1_g000005 Rmu_sc0004742.1_g000021 Rmu_sc0004755.1_g000020 Rmu_sc0004805.1_g000036 Rmu_sc0005065.1_g000006 Rmu_sc0005177.1_g000004 Rmu_sc0006373.1_g000003 Rmu_sc0006373.1_g000004 Rmu_sc0007121.1_g000002 Rmu_sc0007943.1_g000003 Rmu_sc0010368.1_g000006 Rmu_sc0010543.1_g000001 Rmu_sc0012591.1_g000006 Rmu_sc0013504.1_g000009 Rmu_sc0015025.1_g000001 Rmu_sc0016170.1_g000001 Rmu_sc0017156.1_g000001 Rmu_sc0026439.1_g000001
rosa_roxburghii Rroxscaffold_175G00432280 Rroxscaffold_1G00030190 Rroxscaffold_1G00030880 Rroxscaffold_2G00090520 Rroxscaffold_3G00227940 Rroxscaffold_3G00233400 Rroxscaffold_3G00238500 Rroxscaffold_3G00251650 Rroxscaffold_4G00301570 Rroxscaffold_4G00321040 Rroxscaffold_5G00350880 Rroxscaffold_7G00184400
rosa_rugosa Rorug01G0080800 Rorug01G0080900 Rorug01G0193900 Rorug02G0275900 Rorug02G0275900 Rorug02G0275900 Rorug02G0305400 Rorug02G0311800 Rorug02G0350400 Rorug02G0381300 Rorug03G0136700 Rorug03G0181900 Rorug03G0268000 Rorug04G0301600 Rorug05G0175100 Rorug05G0250700 Rorug05G0298200 Rorug05G0596000 Rorug06G0029500 Rorug07G0094300 Rorug07G0094300 Rorug07G0095400 Rorug07G0140100
rosa_samantha Rh1AG099200 Rh1AG190500 Rh1BG078900 Rh1BG079000 Rh1BG079100 Rh1CG084600 Rh1CG084700 Rh1CG095300 Rh1CG175900 Rh1DG103300 Rh1DG150400 Rh2AG079300 Rh2AG272400 Rh2AG464800 Rh2AG507400 Rh2DG078300 Rh2DG078400 Rh3CG206900 Rh3CG295400 Rh3DG206800 Rh3DG356200 Rh4CG071500 Rh4CG179200 Rh4DG064700 Rh5CG362400 Rh7AG212300 Rh7AG226200 Rh7BG222200
rosa_wichuraiana Rw0G009990 Rw0G011260 Rw0G011270 Rw0G012910 Rw0G013740 Rw1G007740 Rw1G013050 Rw1G014230 Rw2G014270 Rw3G012720 Rw3G028110 Rw4G006630 Rw4G015270 Rw4G016160 Rw4G031380 Rw5G011440 Rw5G029180 Rw5G048360 Rw5G048430 Rw5G048780 Rw6G005250 Rw6G006390 Rw7G002840 Rw7G014080 Rw7G019650 Rw7G032790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 846, 1019
AclWI GGATC 3 cut(s) 5, 270, 473
AcoI YGGCCR 1 cut(s) 495
AcsI RAATTY 2 cut(s) 173, 376
AcuI CTGAAG 2 cut(s) 30, 453
AfaI GTAC 2 cut(s) 427, 841
AgsI TTSAA 9 cut(s) 98, 203, 409, 548, 630, 687, 695, 901, 971
AjiI CACGTC 1 cut(s) 578
AluBI AGCT 7 cut(s) 383, 431, 462, 536, 653, 712, 813
AluI AGCT 7 cut(s) 383, 431, 462, 536, 653, 712, 813
Alw26I GTCTC 1 cut(s) 95
AlwI GGATC 3 cut(s) 5, 270, 473
Ama87I CYCGRG 2 cut(s) 207, 817
AoxI GGCC 2 cut(s) 100, 495
ApoI RAATTY 2 cut(s) 173, 376
Asp700I GAANNNNTTC 2 cut(s) 173, 216
AspS9I GGNCC 1 cut(s) 101
AsuC2I CCSGG 1 cut(s) 1068
AsuHPI GGTGA 4 cut(s) 71, 202, 308, 1010
AvaI CYCGRG 2 cut(s) 207, 817
BanII GRGCYC 1 cut(s) 967
BbsI GAAGAC 2 cut(s) 36, 69
BccI CCATC 3 cut(s) 44, 91, 989
BclI TGATCA 2 cut(s) 748, 1000
BcnI CCSGG 1 cut(s) 1068
BcoDI GTCTC 1 cut(s) 95
BfaI CTAG 3 cut(s) 87, 674, 723
BglII AGATCT 1 cut(s) 214
Bme1390I CCNGG 1 cut(s) 1068
BmeT110I CYCGRG 2 cut(s) 207, 817
BmgBI CACGTC 1 cut(s) 578
BmgT120I GGNCC 1 cut(s) 101
BmiI GGNNCC 1 cut(s) 103
BmrFI CCNGG 1 cut(s) 1068
BmsI GCATC 1 cut(s) 855
BpiI GAAGAC 2 cut(s) 36, 69
BpuEI CTTGAG 2 cut(s) 379, 896
BpuMI CCSGG 1 cut(s) 1068
BsaBI GATNNNNATC 1 cut(s) 999
BsaJI CCNNGG 1 cut(s) 1067
BsaXI ACNNNNNCTCC 2 cut(s) 277, 307
Bse8I GATNNNNATC 1 cut(s) 999
BseDI CCNNGG 1 cut(s) 1067
BseGI GGATG 4 cut(s) 502, 784, 791, 1003
BseJI GATNNNNATC 1 cut(s) 999
BseMII CTCAG 1 cut(s) 212
BseRI GAGGAG 1 cut(s) 376
BseYI CCCAGC 1 cut(s) 23
BshFI GGCC 2 cut(s) 102, 497
BsiHKCI CYCGRG 2 cut(s) 207, 817
BsiSI CCGG 2 cut(s) 498, 1067
BslFI GGGAC 1 cut(s) 1084
BsmAI GTCTC 1 cut(s) 95
BsmFI GGGAC 1 cut(s) 1084
BsnI GGCC 2 cut(s) 102, 497
BsoBI CYCGRG 2 cut(s) 207, 817
Bsp1286I GDGCHC 1 cut(s) 967
Bsp143I GATC 7 cut(s) 10, 214, 275, 478, 613, 748, 1000
BspANI GGCC 2 cut(s) 102, 497
BspCNI CTCAG 1 cut(s) 213
BspHI TCATGA 1 cut(s) 475
BspLI GGNNCC 1 cut(s) 103
BspPI GGATC 3 cut(s) 5, 270, 473
BssECI CCNNGG 1 cut(s) 1067
BssMI GATC 7 cut(s) 10, 214, 275, 478, 613, 748, 1000
BstC8I GCNNGC 1 cut(s) 565
BstDEI CTNAG 1 cut(s) 221
BstF5I GGATG 4 cut(s) 502, 784, 791, 1003
BstKTI GATC 7 cut(s) 13, 217, 278, 481, 616, 751, 1003
BstMAI GTCTC 1 cut(s) 95
BstMBI GATC 7 cut(s) 10, 214, 275, 478, 613, 748, 1000
BstSCI CCNGG 1 cut(s) 1066
BstV2I GAAGAC 2 cut(s) 36, 69
BstX2I RGATCY 2 cut(s) 10, 214
BstXI CCANNNNNNTGG 1 cut(s) 493
BstYI RGATCY 2 cut(s) 10, 214
BsuRI GGCC 2 cut(s) 102, 497
BtrI CACGTC 1 cut(s) 578
BtsCI GGATG 4 cut(s) 502, 784, 791, 1003
BtsIMutI CAGTG 1 cut(s) 965
Cac8I GCNNGC 1 cut(s) 565
CciI TCATGA 1 cut(s) 475
Cfr13I GGNCC 1 cut(s) 101
Csp6I GTAC 2 cut(s) 426, 840
CviAII CATG 3 cut(s) 144, 476, 931
CviQI GTAC 2 cut(s) 426, 840
DdeI CTNAG 1 cut(s) 221
DpnI GATC 7 cut(s) 12, 216, 277, 480, 615, 750, 1002
DpnII GATC 7 cut(s) 10, 214, 275, 478, 613, 748, 1000
EaeI YGGCCR 1 cut(s) 495
Eco24I GRGCYC 1 cut(s) 967
Eco57I CTGAAG 2 cut(s) 30, 453
Eco88I CYCGRG 2 cut(s) 207, 817
EcoO109I RGGNCCY 1 cut(s) 101
EcoRI GAATTC 1 cut(s) 173
EcoT22I ATGCAT 1 cut(s) 1091
EcoT38I GRGCYC 1 cut(s) 967
FaeI CATG 3 cut(s) 147, 479, 934
FaqI GGGAC 1 cut(s) 1084
FatI CATG 3 cut(s) 143, 475, 930
FauNDI CATATG 1 cut(s) 1091
FbaI TGATCA 2 cut(s) 748, 1000
FokI GGATG 4 cut(s) 489, 771, 778, 990
FriOI GRGCYC 1 cut(s) 967
FspBI CTAG 3 cut(s) 87, 674, 723
GsaI CCCAGC 1 cut(s) 27
HaeIII GGCC 2 cut(s) 102, 497
HapII CCGG 2 cut(s) 498, 1067
Hin1II CATG 3 cut(s) 147, 479, 934
HincII GTYRAC 1 cut(s) 804
HindII GTYRAC 1 cut(s) 804
HinfI GANTC 3 cut(s) 583, 766, 1072
HpaII CCGG 2 cut(s) 498, 1067
HphI GGTGA 4 cut(s) 71, 202, 308, 1010
Hpy166II GTNNAC 1 cut(s) 804
Hpy188I TCNGA 5 cut(s) 49, 222, 582, 789, 1056
Hpy188III TCNNGA 5 cut(s) 209, 476, 611, 630, 968
Hpy8I GTNNAC 1 cut(s) 804
HpyAV CCTTC 7 cut(s) 92, 428, 439, 492, 605, 658, 919
HpyCH4IV ACGT 2 cut(s) 304, 577
HpyCH4V TGCA 4 cut(s) 31, 623, 934, 1089
HpyF3I CTNAG 1 cut(s) 221
HpySE526I ACGT 2 cut(s) 304, 577
Hsp92II CATG 3 cut(s) 147, 479, 934
Ksp22I TGATCA 2 cut(s) 748, 1000
Kzo9I GATC 7 cut(s) 10, 214, 275, 478, 613, 748, 1000
LpnPI CCDG 8 cut(s) 9, 511, 549, 624, 741, 935, 1012, 1080
LweI GCATC 1 cut(s) 855
MaeI CTAG 3 cut(s) 87, 674, 723
MaeII ACGT 2 cut(s) 304, 577
MaeIII GTNAC 2 cut(s) 154, 246
MalI GATC 7 cut(s) 12, 216, 277, 480, 615, 750, 1002
MboI GATC 7 cut(s) 10, 214, 275, 478, 613, 748, 1000
MboII GAAGA 8 cut(s) 20, 36, 74, 209, 224, 378, 432, 608
MflI RGATCY 2 cut(s) 10, 214
MhlI GDGCHC 1 cut(s) 967
MluCI AATT 8 cut(s) 173, 237, 376, 411, 456, 656, 687, 1050
MlyI GAGTC 2 cut(s) 760, 1066
MmeI TCCRAC 1 cut(s) 812
MnlI CCTC 8 cut(s) 52, 160, 188, 323, 354, 358, 523, 934
Mph1103I ATGCAT 1 cut(s) 1091
MroXI GAANNNNTTC 2 cut(s) 173, 216
MslI CAYNNNNRTG 2 cut(s) 474, 491
MspA1I CMGCKG 1 cut(s) 431
MspI CCGG 2 cut(s) 498, 1067
MspR9I CCNGG 1 cut(s) 1068
NciI CCSGG 1 cut(s) 1068
NdeI CATATG 1 cut(s) 1091
NdeII GATC 7 cut(s) 10, 214, 275, 478, 613, 748, 1000
NlaIII CATG 3 cut(s) 147, 479, 934
NlaIV GGNNCC 1 cut(s) 103
NmuCI GTSAC 2 cut(s) 154, 246
NsiI ATGCAT 1 cut(s) 1091
PaeR7I CTCGAG 2 cut(s) 207, 817
PagI TCATGA 1 cut(s) 475
PdmI GAANNNNTTC 2 cut(s) 173, 216
PfeI GAWTC 1 cut(s) 583
PleI GAGTC 2 cut(s) 760, 1066
PpsI GAGTC 2 cut(s) 760, 1066
PsiI TTATAA 2 cut(s) 846, 1019
PspFI CCCAGC 1 cut(s) 23
PspN4I GGNNCC 1 cut(s) 103
PspPI GGNCC 1 cut(s) 101
PspXI VCTCGAGB 1 cut(s) 817
PsuI RGATCY 2 cut(s) 10, 214
PvuII CAGCTG 1 cut(s) 431
RsaI GTAC 2 cut(s) 427, 841
RsaNI GTAC 2 cut(s) 426, 840
RseI CAYNNNNRTG 2 cut(s) 474, 491
Sau3AI GATC 7 cut(s) 10, 214, 275, 478, 613, 748, 1000
Sau96I GGNCC 1 cut(s) 101
SchI GAGTC 2 cut(s) 760, 1066
ScrFI CCNGG 1 cut(s) 1068
SduI GDGCHC 1 cut(s) 967
SfaNI GCATC 1 cut(s) 855
Sfr274I CTCGAG 2 cut(s) 207, 817
SlaI CTCGAG 2 cut(s) 207, 817
SmiMI CAYNNNNRTG 2 cut(s) 474, 491
SmlI CTYRAG 4 cut(s) 207, 358, 817, 875
SmoI CTYRAG 4 cut(s) 207, 358, 817, 875
Sse9I AATT 8 cut(s) 173, 237, 376, 411, 456, 656, 687, 1050
SspI AATATT 1 cut(s) 163
SspMI CTAG 3 cut(s) 87, 674, 723
StyD4I CCNGG 1 cut(s) 1066
TaiI ACGT 2 cut(s) 307, 580
TaqI TCGA 4 cut(s) 208, 343, 818, 893
TasI AATT 8 cut(s) 173, 237, 376, 411, 456, 656, 687, 1050
TatI WGTACW 2 cut(s) 425, 839
TfiI GAWTC 1 cut(s) 583
TscAI CASTG 1 cut(s) 965
TseFI GTSAC 2 cut(s) 154, 246
Tsp45I GTSAC 2 cut(s) 154, 246
TspDTI ATGAA 4 cut(s) 186, 458, 919, 1058
TspGWI ACGGA 1 cut(s) 142
TspRI CASTG 1 cut(s) 965
XapI RAATTY 2 cut(s) 173, 376
XhoI CTCGAG 2 cut(s) 207, 817
XmnI GAANNNNTTC 2 cut(s) 173, 216
XspI CTAG 3 cut(s) 87, 674, 723
Zsp2I ATGCAT 1 cut(s) 1091
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.