Rorug01G0080800

isoform X1

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
Physical Location & Seq
Reverse (-)
13108398 .. 13112513
4116 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0080800.1

Sequence Viewer

Length: 2835 bp
ATGCATAAAATTCTTTTTTGGAATTCTAGAGGTGCTGGAAGTGAGAAGTTTAGGTCTGATATTATTGATCTTGTTAAACTACATTCTATTGACATTTTAGCTCTTTGTGAGCCTCGTGTTCAGTTTTCTAAAGCTAAGGATACTTTGTTATCTCTTGGCTTTACTGATTATAAAATTGTTGAAGCTAATGGTTTTTCTGGTGGCATTTGGTTATTTTGGAGTTCTAATCAGGTGAAACTCGACATTATTGATATGAATTGTCAGTCAATCACAGCTAAAATCTCTCAACCAAATGGTACTGCTTGGATGCTTACTGCTCTTTATGCTAGCCCTACCAATTCAGTAAGAAGTAATCTGTGGAAGTATTTGGAACGTCTAGCCTTCACTCATCATCTTCCTTGGATTTTCATGGGAGACTTTAATGAGCTCTATTCTTGTGTTGACAAGAACTTTGGTACTATATCTGGTAGAATTGGAGGTCTGAAGCATTGGGTTGATAGCAACTTTCTTATTGATATGGGGTTTCTTGGCTCTTGCGACACTTGGTCTAACAACAGAATTAAAGAGAGATTGGATAGAGCTTTCTGTACTTGCGATTGGAGAACTCATTTTCCTGAGGCTTTCATCAGACATCTTCCTAAAATGAAATCAGATCACTGTCCCATTCTGCTACAATTACATTCTAATAATTATGTTAATAGAAGGGTCACTCCTTTCAGATTTCAAGCGATGTGGTTAACTCACTGTGACTTTTCTACCTTTGTTGCTGACTCTTGGAAATCCTATAGTGGAGACTTTGTTAAAAAAACCACTGACCTCTCCCATGATTTGCAGCAGTGGAACATCAATATATTTGGCAACATTTTTAAAAGGAAAAAGCATCTTCTTGCCCGCATTGGTGGCATTCAGAAAGCTACTGACAGTTCCATTTGTGGATCTCCTCTCACTTCTGATTTGGGAAAATACCTTGGTATGCCACTCATTCACTCAAGAGTCAATAAATATACATATGCCAGTATTCTTGATAAGGTTCAAAGTAGACTTTCGGTTTGGAAATGCAAAAATTTGAGCTTAGCTGGTCGATTAACTCTAATTCAGTCTGTGACTGCTGCTATTCCTAATTATGCCATGCAAACTGCTAGATTACCTATGTCAATCTGTGATGATTTGGACAAAATAAATAGAAACTTCCTTTGGGGTGATTTAGAGAGCAAGAAAAAGGTGCATCTTGTGAACTGGGATATTGTTTGCTTGCCTAAATCTCTTGGAGGTCTTGGAGTCAAAAAAGCTACTGATATGAATCAGGCAATGCTAGCTAAGGCTGGATGGAGAATCTTGCAAAATGACCCTGGTTTGTGGGCCTCAATTTATAGAGAAAAGTACTTGAAAAATGATGATCTCTTTGATAAGGATTACCACTATCCAAAGGATTGTTCCAGTACATGGAAAAGTGTCTCCCATGGAGCCGATTTATTGAAACGAGGAATTATTTGGAGAGTTGGAGATGGCAGGAAAATTAAATTCTGGACTGATATTTGGCTGCCTCCTCTACCACTCATACACTATGCTCTTCCTGGTGCCTTTATTGATAGCAATATTACTCTATGCTCTTTTTGGGATGCTAATGGTTGGAACATTGACCTGCTATTCTCGCTTCTTCCTTCTGGTATTGTTAATCAAATTGTTCACATTCCTCCTAGGTTTGATGGTTGTGGAGATGACATTCAAATTTGGGGTTGCACTTCGAATGGTTCTTTCTCTGTAAAGTTTGCCTATGGTATCTTTTTTAATGATTATATTGAGAATAACTCTCCTTGGAAATTCATCTGGAGACTGCCGATTCCCCCGAAGCTGAAGACTTTTTTATGGGTGCTCTGTCATGGGAAGCTCCTGACTAATGTGCAGAGAGCTAGAAGACATCTTACTCATGATGACTCTTGTCCTATTTGTCACACAGCCAGTGAGTCATTATCTCATCTTTTTAAAGATTGTCCTGCTGTTTATCGTATATGGAACTCCTTCTCTTTGCCTGAATCTGTTGGGAACACCTTTAACATGGATTGGGAGGGTTGGTTAAATGCTCATCTCCACTGCACTACTAAAACAAGCGCTGGAGTTCAGTGGTGCTCAGTCTTTGTCTTTATTTGCTGGTATATCTGGAAGTGGAGAAACAAGTTTGTTTTTGATGCTCAATTTCAAATTCCTACAAACCCTGGTATGTTGATCTCTTCTGCTGCTACTGAATGGATTAATGCTCAGACTAAGGTGGATTTAGATAAGGCTTATAATCTCAACTTACTCAATTGGTTAAAACCTCCCATTGGGTTTTGTAAATTGAATGTTGATGGTACTAGAAATAGTTTGTCTGGCAAAATTGGTGCTGGTGGTGTTATCAGATCTCCCTCTGGAGATTGGATCAAAGGGTTTCAAGTAAACCTGGGCATTGGTGAGGTTTTGGATGCAGAAACATGGGGTTTGTATTATGGCCTTAGGCAAGCTCTTGGTTGTCATATTACTAAGATCGAGGTTGAGTCGGATTCTGCAATTTTGGTGAAACTTAGTCTTGATAGTGATGTTTCTATCCATCCTCTTGGCTCTCTGATTGATTGCTGCAATGCTTTGATCAAGAAGTTTCAATCTTTCTCCCTAAAGCACATCTATCGTGAATGCAATATGGTGACAGATTGCCTTGCTAAGAATAGCATTGATCATGCTTATGGAGTCATCGAATTTGATGCTCCTCCTGTTCATGCTGCTAATGTTTTTCTTGAAGATTTTGATGGAGCTACTAGAGTTAGAAGATCTGGTGTCGGACCTTCTAGTGGTCATGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

944

Amino Acids

107.12

Weight (kDa)

8.82

Isoelectric Point (pI)

38.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Exo_endo_phos PF03372 6 - 219 5.4e-13 Endonuclease/Exonuclease/phosphatase family
zf-RVT PF13966 586 - 671 8.5e-20 zinc-binding in reverse transcriptase
RVT_3 PF13456 780 - 900 3.1e-22 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000143)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G76710 AT1G76710 AT1G76710 AT1G76710
fragaria_vesca FvH4_1g20063 FvH4_2g15231 FvH4_3g04011 FvH4_3g28681 FvH4_4g01411 FvH4_4g10181 FvH4_4g15922 FvH4_4g16651 FvH4_4g16652 FvH4_5g13892 FvH4_5g13893 FvH4_5g20623 FvH4_5g20623 FvH4_5g20623 FvH4_5g20623 FvH4_5g25511 FvH4_6g12551 FvH4_6g12552 FvH4_6g38841 FvH4_7g04391
malus_domestica MD05G1031300.v1.1 MD05G1031400.v1.1 MD05G1031500.v1.1 MD08G1164400.v1.1 MD10G1032900.v1.1 MD10G1033000.v1.1 MD10G1033100.v1.1
prunus_persica Prupe.3G240700_v2.0.a1 Prupe.7G144600_v2.0.a1 Prupe.8G038500_v2.0.a1 Prupe.8G038500_v2.0.a1
pyrus_communis pycom05g02250 pycom05g02260 pycom05g02270 pycom05g02280 pycom08g14160 pycom10g02100 pycom10g02110 pycom10g02130
rosa_chinensis RchiOBHm_Chr1g0329481 RchiOBHm_Chr1g0329491 RchiOBHm_Chr1g0341531 RchiOBHm_Chr3g0464811 RchiOBHm_Chr3g0494701 RchiOBHm_Chr3g0497501 RchiOBHm_Chr4g0385841 RchiOBHm_Chr5g0061181 RchiOBHm_Chr6g0263001 RchiOBHm_Chr7g0193111 RchiOBHm_Chr7g0206281 RchiOBHm_Chr7g0206311
rosa_laevigata RLG00000018908 RLG00000028528 RLG00000028803 RLG00000029882 RLG00000029883 RLG00000030361
rosa_multiflora Rmu_co8196328.1_g000001 Rmu_co8259135.1_g000001 Rmu_co8269185.1_g000001 Rmu_sc0000076.1_g000019 Rmu_sc0000311.1_g000007 Rmu_sc0000429.1_g000038 Rmu_sc0000429.1_g000039 Rmu_sc0000429.1_g000040 Rmu_sc0000511.1_g000005 Rmu_sc0000539.1_g000054 Rmu_sc0000566.1_g000039 Rmu_sc0000805.1_g000032 Rmu_sc0000870.1_g000073 Rmu_sc0000870.1_g000074 Rmu_sc0001010.1_g000018 Rmu_sc0001083.1_g000013 Rmu_sc0001114.1_g000011 Rmu_sc0001702.1_g000027 Rmu_sc0001779.1_g000012 Rmu_sc0002923.1_g000036 Rmu_sc0003242.1_g000011 Rmu_sc0003291.1_g000036 Rmu_sc0003393.1_g000012 Rmu_sc0003872.1_g000016 Rmu_sc0003872.1_g000017 Rmu_sc0003872.1_g000018 Rmu_sc0004084.1_g000020 Rmu_sc0004386.1_g000005 Rmu_sc0004622.1_g000005 Rmu_sc0004742.1_g000021 Rmu_sc0004755.1_g000020 Rmu_sc0004805.1_g000036 Rmu_sc0005065.1_g000006 Rmu_sc0005177.1_g000004 Rmu_sc0006373.1_g000003 Rmu_sc0006373.1_g000004 Rmu_sc0007121.1_g000002 Rmu_sc0007943.1_g000003 Rmu_sc0010368.1_g000006 Rmu_sc0010543.1_g000001 Rmu_sc0012591.1_g000006 Rmu_sc0013504.1_g000009 Rmu_sc0015025.1_g000001 Rmu_sc0016170.1_g000001 Rmu_sc0017156.1_g000001 Rmu_sc0026439.1_g000001
rosa_roxburghii Rroxscaffold_175G00432280 Rroxscaffold_1G00030190 Rroxscaffold_1G00030880 Rroxscaffold_2G00090520 Rroxscaffold_3G00227940 Rroxscaffold_3G00233400 Rroxscaffold_3G00238500 Rroxscaffold_3G00251650 Rroxscaffold_4G00301570 Rroxscaffold_4G00321040 Rroxscaffold_5G00350880 Rroxscaffold_7G00184400
rosa_rugosa Rorug01G0080800 Rorug01G0080900 Rorug01G0193900 Rorug02G0275900 Rorug02G0275900 Rorug02G0275900 Rorug02G0305400 Rorug02G0311800 Rorug02G0350400 Rorug02G0381300 Rorug03G0136700 Rorug03G0181900 Rorug03G0268000 Rorug04G0301600 Rorug05G0175100 Rorug05G0250700 Rorug05G0298200 Rorug05G0596000 Rorug06G0029500 Rorug07G0094300 Rorug07G0094300 Rorug07G0095400 Rorug07G0140100
rosa_samantha Rh1AG099200 Rh1AG190500 Rh1BG078900 Rh1BG079000 Rh1BG079100 Rh1CG084600 Rh1CG084700 Rh1CG095300 Rh1CG175900 Rh1DG103300 Rh1DG150400 Rh2AG079300 Rh2AG272400 Rh2AG464800 Rh2AG507400 Rh2DG078300 Rh2DG078400 Rh3CG206900 Rh3CG295400 Rh3DG206800 Rh3DG356200 Rh4CG071500 Rh4CG179200 Rh4DG064700 Rh5CG362400 Rh7AG212300 Rh7AG226200 Rh7BG222200
rosa_wichuraiana Rw0G009990 Rw0G011260 Rw0G011270 Rw0G012910 Rw0G013740 Rw1G007740 Rw1G013050 Rw1G014230 Rw2G014270 Rw3G012720 Rw3G028110 Rw4G006630 Rw4G015270 Rw4G016160 Rw4G031380 Rw5G011440 Rw5G029180 Rw5G048360 Rw5G048430 Rw5G048780 Rw6G005250 Rw6G006390 Rw7G002840 Rw7G014080 Rw7G019650 Rw7G032790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 171, 2286
Acc36I ACCTGC 1 cut(s) 1650
AccB1I GGYRCC 1 cut(s) 1577
AccB7I CCANNNNNTGG 1 cut(s) 1443
AccI GTMKAC 1 cut(s) 1039
AciI CCGC 1 cut(s) 892
AclWI GGATC 2 cut(s) 943, 2423
AcsI RAATTY 8 cut(s) 9, 22, 1063, 1520, 1728, 1820, 2199, 2729
AcuI CTGAAG 2 cut(s) 503, 1874
AfaI GTAC 6 cut(s) 298, 457, 589, 1382, 1441, 2350
AfeI AGCGCT 1 cut(s) 2110
AfiI CCNNNNNNNGG 3 cut(s) 1443, 2321, 2822
AhdI GACNNNNNGTC 1 cut(s) 544
AjnI CCWGG 4 cut(s) 1348, 1573, 2212, 2436
AjuI GAANNNNNNNTTGG 4 cut(s) 1177, 1209, 1417, 1449
AloI GAACNNNNNNTCC 2 cut(s) 595, 627
Alw21I GWGCWC 3 cut(s) 429, 1875, 2129
Alw26I GTCTC 4 cut(s) 408, 786, 1459, 1825
AlwI GGATC 2 cut(s) 943, 2423
Aor51HI AGCGCT 1 cut(s) 2110
AoxI GGCC 2 cut(s) 1359, 2485
ApeKI GCWGC 6 cut(s) 832, 1109, 1540, 2234, 2610, 2753
ApoI RAATTY 8 cut(s) 9, 22, 1063, 1520, 1728, 1820, 2199, 2729
ArsI GACNNNNNNTTYG 4 cut(s) 434, 466, 1032, 1064
AseI ATTAAT 1 cut(s) 2250
Asp700I GAANNNNTTC 1 cut(s) 2018
AspA2I CCTAGG 1 cut(s) 1697
AspLEI GCGC 1 cut(s) 2111
AspS9I GGNCC 2 cut(s) 1359, 2813
AsuHPI GGTGA 5 cut(s) 244, 1211, 2459, 2563, 2689
AsuII TTCGAA 1 cut(s) 1745
AsuNHI GCTAGC 2 cut(s) 326, 1312
AvaII GGWCC 1 cut(s) 2813
AvrII CCTAGG 1 cut(s) 1697
AxyI CCTNAGG 2 cut(s) 615, 2489
BanI GGYRCC 1 cut(s) 1577
BanII GRGCYC 1 cut(s) 429
BarI GAAGNNNNNNTAC 2 cut(s) 1906, 1938
BauI CACGAG 1 cut(s) 114
BbsI GAAGAC 2 cut(s) 1862, 1921
Bbv12I GWGCWC 3 cut(s) 429, 1875, 2129
BbvI GCAGC 6 cut(s) 844, 1096, 1527, 2221, 2597, 2740
BccI CCATC 6 cut(s) 1320, 1499, 1700, 2339, 2592, 2774
BcgI CGANNNNNNTGC 4 cut(s) 2642, 2676, 2717, 2751
BciT130I CCWGG 4 cut(s) 1350, 1575, 2214, 2438
BciVI GTATCC 1 cut(s) 133
BclI TGATCA 2 cut(s) 2622, 2707
BcoDI GTCTC 4 cut(s) 408, 786, 1459, 1825
BfmI CTRYAG 1 cut(s) 784
BfoI RGCGCY 1 cut(s) 2112
BfuAI ACCTGC 1 cut(s) 1650
BfuI GTATCC 1 cut(s) 133
BglII AGATCT 2 cut(s) 2396, 2801
BisI GCNGC 6 cut(s) 833, 1110, 1541, 2235, 2611, 2754
BlnI CCTAGG 1 cut(s) 1697
BlpI GCTNAGC 1 cut(s) 1072
BlsI GCNGC 6 cut(s) 834, 1111, 1542, 2236, 2612, 2755
BmcAI AGTACT 1 cut(s) 1382
Bme1390I CCNGG 4 cut(s) 1350, 1575, 2214, 2438
Bme18I GGWCC 1 cut(s) 2813
BmeRI GACNNNNNGTC 1 cut(s) 544
BmgT120I GGNCC 2 cut(s) 1359, 2813
BmiI GGNNCC 2 cut(s) 1465, 1579
BmrFI CCNGG 4 cut(s) 1350, 1575, 2214, 2438
BmrI ACTGGG 1 cut(s) 1246
BmsI GCATC 7 cut(s) 297, 889, 1234, 1609, 2176, 2449, 2725
BmtI GCTAGC 2 cut(s) 330, 1316
BmuI ACTGGG 1 cut(s) 1246
BoxI GACNNNNGTC 1 cut(s) 1938
BpiI GAAGAC 2 cut(s) 1862, 1921
BplI GAGNNNNNCTC 2 cut(s) 1793, 1825
BpmI CTGGAG 3 cut(s) 1849, 2133, 2427
Bpu10I CCTNAGC 2 cut(s) 135, 1317
Bpu1102I GCTNAGC 1 cut(s) 1072
Bpu14I TTCGAA 1 cut(s) 1745
BpuEI CTTGAG 1 cut(s) 973
BsaBI GATNNNNATC 1 cut(s) 1299
BsaJI CCNNGG 8 cut(s) 398, 967, 1348, 1459, 1697, 1814, 2212, 2437
BsaXI ACNNNNNCTCC 4 cut(s) 783, 813, 2057, 2087
Bsc4I CCNNNNNNNGG 3 cut(s) 1443, 2321, 2822
Bse1I ACTGG 4 cut(s) 1014, 1241, 1437, 1959
Bse21I CCTNAGG 2 cut(s) 615, 2489
Bse3DI GCAATG 2 cut(s) 1314, 2620
Bse8I GATNNNNATC 1 cut(s) 1299
BseBI CCWGG 4 cut(s) 1350, 1575, 2214, 2438
BseDI CCNNGG 8 cut(s) 398, 967, 1348, 1459, 1697, 1814, 2212, 2437
BseGI GGATG 5 cut(s) 312, 1331, 1624, 2464, 2584
BseJI GATNNNNATC 1 cut(s) 1299
BseLI CCNNNNNNNGG 3 cut(s) 1443, 2321, 2822
BseMI GCAATG 2 cut(s) 1314, 2620
BseMII CTCAG 3 cut(s) 606, 2142, 2270
BseNI ACTGG 4 cut(s) 1014, 1241, 1437, 1959
BseRI GAGGAG 3 cut(s) 930, 1536, 2730
BseXI GCAGC 6 cut(s) 844, 1096, 1527, 2221, 2597, 2740
BsgI GTGCAG 2 cut(s) 1922, 2077
BshFI GGCC 2 cut(s) 1361, 2487
BshNI GGYRCC 1 cut(s) 1577
BsiHKAI GWGCWC 3 cut(s) 429, 1875, 2129
BslFI GGGAC 1 cut(s) 645
BslI CCNNNNNNNGG 3 cut(s) 1443, 2321, 2822
BsmAI GTCTC 4 cut(s) 408, 786, 1459, 1825
BsmFI GGGAC 1 cut(s) 645
BsmI GAATGC 2 cut(s) 903, 2672
BsnI GGCC 2 cut(s) 1361, 2487
Bsp119I TTCGAA 1 cut(s) 1745
Bsp1286I GDGCHC 3 cut(s) 429, 1875, 2129
Bsp1720I GCTNAGC 1 cut(s) 1072
Bsp19I CCATGG 1 cut(s) 1459
BspACI CCGC 1 cut(s) 892
BspANI GGCC 2 cut(s) 1361, 2487
BspCNI CTCAG 3 cut(s) 607, 2141, 2269
BspHI TCATGA 1 cut(s) 1927
BspLI GGNNCC 2 cut(s) 1465, 1579
BspMI ACCTGC 1 cut(s) 1650
BspOI GCTAGC 2 cut(s) 330, 1316
BspPI GGATC 2 cut(s) 943, 2423
BspQI GCTCTTC 1 cut(s) 1575
BspT104I TTCGAA 1 cut(s) 1745
BspT107I GGYRCC 1 cut(s) 1577
BsrDI GCAATG 2 cut(s) 1314, 2620
BsrI ACTGG 4 cut(s) 1014, 1241, 1437, 1959
BssECI CCNNGG 8 cut(s) 398, 967, 1348, 1459, 1697, 1814, 2212, 2437
BssSI CACGAG 1 cut(s) 114
BssT1I CCWWGG 5 cut(s) 398, 967, 1459, 1697, 1814
Bst2BI CACGAG 1 cut(s) 114
Bst2UI CCWGG 4 cut(s) 1350, 1575, 2214, 2438
Bst4CI ACNGT 3 cut(s) 659, 746, 923
Bst6I CTCTTC 2 cut(s) 1575, 2233
BstBI TTCGAA 1 cut(s) 1745
BstC8I GCNNGC 5 cut(s) 328, 892, 1253, 1314, 2496
BstDSI CCRYGG 1 cut(s) 1459
BstF5I GGATG 5 cut(s) 312, 1331, 1624, 2464, 2584
BstH2I RGCGCY 1 cut(s) 2112
BstHHI GCGC 1 cut(s) 2111
BstMAI GTCTC 4 cut(s) 408, 786, 1459, 1825
BstMWI GCNNNNNNNGC 4 cut(s) 323, 900, 1313, 1651
BstNI CCWGG 4 cut(s) 1350, 1575, 2214, 2438
BstPAI GACNNNNGTC 1 cut(s) 1938
BstSCI CCNGG 4 cut(s) 1348, 1573, 2212, 2436
BstSFI CTRYAG 1 cut(s) 784
BstV1I GCAGC 6 cut(s) 844, 1096, 1527, 2221, 2597, 2740
BstV2I GAAGAC 2 cut(s) 1862, 1921
BstX2I RGATCY 3 cut(s) 935, 2396, 2801
BstXI CCANNNNNNTGG 1 cut(s) 2591
BstYI RGATCY 3 cut(s) 935, 2396, 2801
Bsu36I CCTNAGG 2 cut(s) 615, 2489
BsuI GTATCC 1 cut(s) 133
BsuRI GGCC 2 cut(s) 1361, 2487
BtgI CCRYGG 1 cut(s) 1459
BtgZI GCGATG 1 cut(s) 743
BtsCI GGATG 5 cut(s) 312, 1331, 1624, 2464, 2584
BtsI GCAGTG 2 cut(s) 842, 2089
BtsIMutI CAGTG 7 cut(s) 655, 742, 810, 842, 1966, 2089, 2126
BveI ACCTGC 1 cut(s) 1650
Cac8I GCNNGC 5 cut(s) 328, 892, 1253, 1314, 2496
CciI TCATGA 1 cut(s) 1927
CfoI GCGC 1 cut(s) 2111
Cfr13I GGNCC 2 cut(s) 1359, 2813
Csp6I GTAC 6 cut(s) 297, 456, 588, 1381, 1440, 2349
CspCI CAANNNNNGTGG 2 cut(s) 713, 748
CviQI GTAC 6 cut(s) 297, 456, 588, 1381, 1440, 2349
DraI TTTAAA 2 cut(s) 868, 1984
DriI GACNNNNNGTC 1 cut(s) 544
Eam1104I CTCTTC 2 cut(s) 1575, 2233
Eam1105I GACNNNNNGTC 1 cut(s) 544
EarI CTCTTC 2 cut(s) 1575, 2233
Ecl136II GAGCTC 1 cut(s) 427
Eco130I CCWWGG 5 cut(s) 398, 967, 1459, 1697, 1814
Eco24I GRGCYC 1 cut(s) 429
Eco47I GGWCC 1 cut(s) 2813
Eco47III AGCGCT 1 cut(s) 2110
Eco53kI GAGCTC 1 cut(s) 427
Eco57I CTGAAG 2 cut(s) 503, 1874
Eco81I CCTNAGG 2 cut(s) 615, 2489
EcoICRI GAGCTC 1 cut(s) 427
EcoRI GAATTC 1 cut(s) 22
EcoRII CCWGG 4 cut(s) 1348, 1573, 2212, 2436
EcoT14I CCWWGG 5 cut(s) 398, 967, 1459, 1697, 1814
EcoT22I ATGCAT 1 cut(s) 6
EcoT38I GRGCYC 1 cut(s) 429
ErhI CCWWGG 5 cut(s) 398, 967, 1459, 1697, 1814
FaqI GGGAC 1 cut(s) 645
FauI CCCGC 1 cut(s) 899
FauNDI CATATG 1 cut(s) 1009
FbaI TGATCA 2 cut(s) 2622, 2707
FblI GTMKAC 1 cut(s) 1039
Fnu4HI GCNGC 6 cut(s) 833, 1110, 1541, 2235, 2611, 2754
FokI GGATG 5 cut(s) 319, 1338, 1631, 2471, 2571
FriOI GRGCYC 1 cut(s) 429
Fsp4HI GCNGC 6 cut(s) 833, 1110, 1541, 2235, 2611, 2754
GlaI GCGC 1 cut(s) 2110
GluI GCNGC 6 cut(s) 833, 1110, 1541, 2235, 2611, 2754
GsuI CTGGAG 3 cut(s) 1849, 2133, 2427
HaeII RGCGCY 1 cut(s) 2112
HaeIII GGCC 2 cut(s) 1361, 2487
HhaI GCGC 1 cut(s) 2111
Hin6I GCGC 1 cut(s) 2109
HinP1I GCGC 1 cut(s) 2109
HincII GTYRAC 2 cut(s) 442, 738
HindII GTYRAC 2 cut(s) 442, 738
HpaI GTTAAC 1 cut(s) 738
HphI GGTGA 5 cut(s) 244, 1211, 2459, 2563, 2689
Hpy166II GTNNAC 6 cut(s) 442, 738, 1040, 1234, 1687, 2434
Hpy8I GTNNAC 6 cut(s) 442, 738, 1040, 1234, 1687, 2434
HpyAV CCTTC 5 cut(s) 391, 696, 1671, 2029, 2826
HpyCH4III ACNGT 3 cut(s) 659, 746, 923
HpyCH4IV ACGT 1 cut(s) 373
HpyF10VI GCNNNNNNNGC 4 cut(s) 323, 900, 1313, 1651
HpySE526I ACGT 1 cut(s) 373
HspAI GCGC 1 cut(s) 2109
Ksp22I TGATCA 2 cut(s) 2622, 2707
KspAI GTTAAC 1 cut(s) 738
LguI GCTCTTC 1 cut(s) 1575
LmnI GCTCC 4 cut(s) 1463, 1893, 2743, 2783
Lsp1109I GCAGC 6 cut(s) 844, 1096, 1527, 2221, 2597, 2740
LweI GCATC 7 cut(s) 297, 889, 1234, 1609, 2176, 2449, 2725
MaeII ACGT 1 cut(s) 373
MaeIII GTNAC 5 cut(s) 706, 746, 1102, 1949, 2677
MfeI CAATTG 1 cut(s) 2302
MflI RGATCY 3 cut(s) 935, 2396, 2801
MhlI GDGCHC 3 cut(s) 429, 1875, 2129
MlyI GAGTC 7 cut(s) 764, 1002, 1287, 1928, 1973, 2540, 2730
MmeI TCCRAC 4 cut(s) 1480, 1610, 2514, 2791
Mph1103I ATGCAT 1 cut(s) 6
MroXI GAANNNNTTC 1 cut(s) 2018
MslI CAYNNNNRTG 1 cut(s) 2715
MspR9I CCNGG 4 cut(s) 1350, 1575, 2214, 2438
MunI CAATTG 1 cut(s) 2302
Mva1269I GAATGC 2 cut(s) 903, 2672
MvaI CCWGG 4 cut(s) 1350, 1575, 2214, 2438
MwoI GCNNNNNNNGC 4 cut(s) 323, 900, 1313, 1651
NcoI CCATGG 1 cut(s) 1459
NdeI CATATG 1 cut(s) 1009
NheI GCTAGC 2 cut(s) 326, 1312
NlaIV GGNNCC 2 cut(s) 1465, 1579
NmuCI GTSAC 5 cut(s) 706, 746, 1102, 1949, 2677
NsiI ATGCAT 1 cut(s) 6
NspV TTCGAA 1 cut(s) 1745
PagI TCATGA 1 cut(s) 1927
PciSI GCTCTTC 1 cut(s) 1575
PctI GAATGC 2 cut(s) 903, 2672
PdmI GAANNNNTTC 1 cut(s) 2018
PfeI GAWTC 5 cut(s) 1300, 1332, 1840, 2033, 2537
PflMI CCANNNNNTGG 1 cut(s) 1443
PkrI GCNGC 6 cut(s) 834, 1111, 1542, 2236, 2612, 2755
PleI GAGTC 7 cut(s) 764, 1001, 1286, 1928, 1972, 2539, 2729
PpsI GAGTC 7 cut(s) 764, 1001, 1286, 1928, 1972, 2539, 2729
PshAI GACNNNNGTC 1 cut(s) 1938
PshBI ATTAAT 1 cut(s) 2250
PsiI TTATAA 2 cut(s) 171, 2286
Psp124BI GAGCTC 1 cut(s) 429
Psp6I CCWGG 4 cut(s) 1348, 1573, 2212, 2436
PspGI CCWGG 4 cut(s) 1348, 1573, 2212, 2436
PspN4I GGNNCC 2 cut(s) 1465, 1579
PspPI GGNCC 2 cut(s) 1359, 2813
PsuI RGATCY 3 cut(s) 935, 2396, 2801
RsaI GTAC 6 cut(s) 298, 457, 589, 1382, 1441, 2350
RsaNI GTAC 6 cut(s) 297, 456, 588, 1381, 1440, 2349
RseI CAYNNNNRTG 1 cut(s) 2715
SacI GAGCTC 1 cut(s) 429
SapI GCTCTTC 1 cut(s) 1575
SatI GCNGC 6 cut(s) 833, 1110, 1541, 2235, 2611, 2754
Sau96I GGNCC 2 cut(s) 1359, 2813
ScaI AGTACT 1 cut(s) 1382
SchI GAGTC 7 cut(s) 764, 1002, 1287, 1928, 1973, 2540, 2730
ScrFI CCNGG 4 cut(s) 1350, 1575, 2214, 2438
SduI GDGCHC 3 cut(s) 429, 1875, 2129
SfaNI GCATC 7 cut(s) 297, 889, 1234, 1609, 2176, 2449, 2725
SfcI CTRYAG 1 cut(s) 784
SfuI TTCGAA 1 cut(s) 1745
SinI GGWCC 1 cut(s) 2813
SmiMI CAYNNNNRTG 1 cut(s) 2715
SmlI CTYRAG 1 cut(s) 988
SmoI CTYRAG 1 cut(s) 988
SsiI CCGC 1 cut(s) 892
SspI AATATT 1 cut(s) 1597
SstI GAGCTC 1 cut(s) 429
StyD4I CCNGG 4 cut(s) 1348, 1573, 2212, 2436
StyI CCWWGG 5 cut(s) 398, 967, 1459, 1697, 1814
TaaI ACNGT 3 cut(s) 659, 746, 923
TaiI ACGT 1 cut(s) 376
TaqI TCGA 5 cut(s) 240, 1081, 1745, 2523, 2727
TatI WGTACW 3 cut(s) 587, 1380, 1439
TfiI GAWTC 5 cut(s) 1300, 1332, 1840, 2033, 2537
TscAI CASTG 7 cut(s) 662, 749, 817, 842, 1966, 2096, 2126
TseFI GTSAC 5 cut(s) 706, 746, 1102, 1949, 2677
TseI GCWGC 6 cut(s) 832, 1109, 1540, 2234, 2610, 2753
Tsp45I GTSAC 5 cut(s) 706, 746, 1102, 1949, 2677
TspDTI ATGAA 7 cut(s) 269, 397, 613, 659, 1313, 1813, 2738
TspRI CASTG 7 cut(s) 662, 749, 817, 842, 1966, 2096, 2126
Van91I CCANNNNNTGG 1 cut(s) 1443
VpaK11BI GGWCC 1 cut(s) 2813
VspI ATTAAT 1 cut(s) 2250
XapI RAATTY 8 cut(s) 9, 22, 1063, 1520, 1728, 1820, 2199, 2729
XbaI TCTAGA 1 cut(s) 26
XmaJI CCTAGG 1 cut(s) 1697
XmiI GTMKAC 1 cut(s) 1039
XmnI GAANNNNTTC 1 cut(s) 2018
ZrmI AGTACT 1 cut(s) 1382
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.