MD08G1164400.v1.1

protein FAR1-RELATED SEQUENCE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr08
OG0000143
Physical Location & Seq
Forward (+)
19278106 .. 19281571
3466 bp
Loading structure...
UTR
Exon/CDS
Intron
MD08G1164400.v1.1.491

Sequence Viewer

Length: 2604 bp
ATGTGGGATAAAGAATACAGTTCTGCTGGGGGTAGCGGTGCTTGCTCAGAACGTGTGATCGACTTCACTGGTGAATTCACAACTAATGAGATTTTTAAGAGTAGAGACGAATTGGTGGAGTGGGCTCGCGAGCGAGGACATAGTATTGGTTTGGTGATTATTATCAAGAACTCGGATACAGGAGGGGTTGGTAGTAAGAAACCCCGAATAAAATTGGGCTGTGAAAGGGGTGGCATTTACAAAAGGAGGATTGATGAGAGTGTCCAGAAGAAAAGGCGTAAAAGGAGTGGTACAAAAAAGTGTGGATGCCCATTTCTACTGAAGGGTGTGAGCTTGGGTGATGACGATGAGTGGAAATTGGAGGTTATATGTGGAGTTCACAACCACCATGCTGAAAAGAGCAACACGAGGAGGTTATCTGAAGAGGAGAAAGCAGTGTTGGTAGATATGTCCAAGAGTTCAGCCAAACCCAAAGACATATTACGCACTATCCAAAAGAATGATGGACTCAACATCAACGAAACAATGAAAACAATTTATAATGTCAGACAACGGTTGAAGTTGAAAGAGAATGCTGTGAGATCACAGATGCATGTATTGCTAAATAAGTTATCCGCTCACAAATATATTGAGTGGCATAGGAGCTCAGATGACAATAGTATGGTGAAAGATCTGTTTTGGACTCACCCTGCTAGTGTAGATGTCTTACGTGCATTCCCCCATGTCCTAATCATGGATTGCATAAGTGAGACGTATTCTTTTCCCCTTTTAGAGATCGTAGGGGTGACTTGTACTAATATAACCTTCTCAGCTGCATTTGCTTACCTTGATGCTAAGAATGAAGACAATTACATATGGGCTTTGAGTAGATTGAGGGCTGTGTTGGATGAACATTGTCTTCCTACAGTTATTGTCATGGACAAAGACTTGCCTCTCATGAGCGCTGTTCATAGTATTTTTCCAAGTGCCCGACATTTGTTGTGTAAATTACATATCAGCAAACATGTGTTGGCAAAGTGTAAGGACATGTTTGAGGGTAAAGATCAGTTGGATAAGTTCATGATGAGTTGGAATATGTTGGTGTTATCGGAGACAGGGCACGAGTATCAAAGCCGTCTGCATGAGCTTGATTATTATTTTGGTAGATATCCACATGCACTTGAATATGTGAAGAACACTTGGTTGAACGAGTATAAAGAGAGGTTTGTGTCTGTATGGACAGATACATGTATGCATTATGGCCACTCGACGTCAAATAGGGTGGAAGGCTCAAGTGCGAAACTGAAAAAACTACTTGGCAACAGCCGAGGTAGTTTCGAAATGTCTTGGGAAAGGATTCACTCCTTGTTAGAGTTGCAACACGAAGACATCAAGGTATCACTTGAGAAGTGTTTGGCCGTCGTCCAACACAATTTCATGCATGATGAATTGAAGGAGTTGCGAGGTTTTGTATCCACCATTGCTTTGAGCACAATTGTTTGTGAGTCGAAGAAAGCCAATTTGGTGGGGGTGGATTATTCGTCATGTGGTTGCACCATTCGACGCACACATGGATTGCCCTGTGTGCATGAGATTGCAGAGTATAGACAAACTAGTCGCCCCATTCCTCTTTACTGTGTTGATCCTTATTGGAAGAAATTGGATTTGTTGTACTCCCCAAAGTTTAGTGACCATGCAACTCACGTAATTACAAAAATGTATAGGATCTTAAAGCGGTGGATGGATAGCGATGAGGATGGCAGGGTAGATATTAGTACAAAGTTGGAGGAGATTCTGAATATGGAGTCAATTACCAAGACTACCGAGCAGCCAAGTAGAATTGGCACTACCACTCATTGCAATCTTTCTGCCTTTGAGTTGGCCTTGTCCTGTCAAGTAAGTCATTCACCAGCTGACAGGGTTGCCGCAGTCACTACCACATCCCACTCAGAGAAAACAACAAGGCATCCACCCAAGATGAAGGCGCTCAGGATGTCTCCTCTCACTTCTTCTACGCTGAAAGAGCAGTTTCCTACTGCTTTGAAGCCATATATTTCCTCCATTAGGGATTTTACAGGTGATGGTAATTGTGGCTATCGAGTTATAGCTGGATTGATGGGTTTTGGTGATGATTCTTGGAGCAAGGTACGCAGAGAATTGTTGAATGAGTTGCATTCTCATCAAACACAATATGAGAACCTTTTCGGTAGACATGATAGGGTTGACGAGCTTATGCATGCACTCTCATTCTTTGAGGATTCCCCACCATATGATAGGTGGTTGACCATGCCTGATATGGGACACGTTATCGCATCATGCTATAATGTAGTTGTGATCTATTTATCCATGTCATTATGTCTCACATTTTTGCCAACGAGGACTGTGTCATTGCCCTTGTTAGAGCGCCGACACATTGCCATTGGTTCAGTCAGTGATGACCATTTTGTTCAGGTTTATATGTTTCCAGGGCATCCAATGCCACCTGTCTCGGAATGTTGGCACCGAGTTTGCCTACCAGGTACTGATGGTTGGCAAATCCCATACGCTGAACGTATTCAACGATTTAGACAGACTTTTGGTTCGGATGTAGCTACTCAAGAGATGCAGTCGCTCAATAACTGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE

Protein Analysis

868

Amino Acids

99.25

Weight (kDa)

8.05

Isoelectric Point (pI)

47.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MULE PF10551 250 - 334 4.5e-14 MULE transposase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000143)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G76710 AT1G76710 AT1G76710 AT1G76710
fragaria_vesca FvH4_1g20063 FvH4_2g15231 FvH4_3g04011 FvH4_3g28681 FvH4_4g01411 FvH4_4g10181 FvH4_4g15922 FvH4_4g16651 FvH4_4g16652 FvH4_5g13892 FvH4_5g13893 FvH4_5g20623 FvH4_5g20623 FvH4_5g20623 FvH4_5g20623 FvH4_5g25511 FvH4_6g12551 FvH4_6g12552 FvH4_6g38841 FvH4_7g04391
malus_domestica MD05G1031300.v1.1 MD05G1031400.v1.1 MD05G1031500.v1.1 MD08G1164400.v1.1 MD10G1032900.v1.1 MD10G1033000.v1.1 MD10G1033100.v1.1
prunus_persica Prupe.3G240700_v2.0.a1 Prupe.7G144600_v2.0.a1 Prupe.8G038500_v2.0.a1 Prupe.8G038500_v2.0.a1
pyrus_communis pycom05g02250 pycom05g02260 pycom05g02270 pycom05g02280 pycom08g14160 pycom10g02100 pycom10g02110 pycom10g02130
rosa_chinensis RchiOBHm_Chr1g0329481 RchiOBHm_Chr1g0329491 RchiOBHm_Chr1g0341531 RchiOBHm_Chr3g0464811 RchiOBHm_Chr3g0494701 RchiOBHm_Chr3g0497501 RchiOBHm_Chr4g0385841 RchiOBHm_Chr5g0061181 RchiOBHm_Chr6g0263001 RchiOBHm_Chr7g0193111 RchiOBHm_Chr7g0206281 RchiOBHm_Chr7g0206311
rosa_laevigata RLG00000018908 RLG00000028528 RLG00000028803 RLG00000029882 RLG00000029883 RLG00000030361
rosa_multiflora Rmu_co8196328.1_g000001 Rmu_co8259135.1_g000001 Rmu_co8269185.1_g000001 Rmu_sc0000076.1_g000019 Rmu_sc0000311.1_g000007 Rmu_sc0000429.1_g000038 Rmu_sc0000429.1_g000039 Rmu_sc0000429.1_g000040 Rmu_sc0000511.1_g000005 Rmu_sc0000539.1_g000054 Rmu_sc0000566.1_g000039 Rmu_sc0000805.1_g000032 Rmu_sc0000870.1_g000073 Rmu_sc0000870.1_g000074 Rmu_sc0001010.1_g000018 Rmu_sc0001083.1_g000013 Rmu_sc0001114.1_g000011 Rmu_sc0001702.1_g000027 Rmu_sc0001779.1_g000012 Rmu_sc0002923.1_g000036 Rmu_sc0003242.1_g000011 Rmu_sc0003291.1_g000036 Rmu_sc0003393.1_g000012 Rmu_sc0003872.1_g000016 Rmu_sc0003872.1_g000017 Rmu_sc0003872.1_g000018 Rmu_sc0004084.1_g000020 Rmu_sc0004386.1_g000005 Rmu_sc0004622.1_g000005 Rmu_sc0004742.1_g000021 Rmu_sc0004755.1_g000020 Rmu_sc0004805.1_g000036 Rmu_sc0005065.1_g000006 Rmu_sc0005177.1_g000004 Rmu_sc0006373.1_g000003 Rmu_sc0006373.1_g000004 Rmu_sc0007121.1_g000002 Rmu_sc0007943.1_g000003 Rmu_sc0010368.1_g000006 Rmu_sc0010543.1_g000001 Rmu_sc0012591.1_g000006 Rmu_sc0013504.1_g000009 Rmu_sc0015025.1_g000001 Rmu_sc0016170.1_g000001 Rmu_sc0017156.1_g000001 Rmu_sc0026439.1_g000001
rosa_roxburghii Rroxscaffold_175G00432280 Rroxscaffold_1G00030190 Rroxscaffold_1G00030880 Rroxscaffold_2G00090520 Rroxscaffold_3G00227940 Rroxscaffold_3G00233400 Rroxscaffold_3G00238500 Rroxscaffold_3G00251650 Rroxscaffold_4G00301570 Rroxscaffold_4G00321040 Rroxscaffold_5G00350880 Rroxscaffold_7G00184400
rosa_rugosa Rorug01G0080800 Rorug01G0080900 Rorug01G0193900 Rorug02G0275900 Rorug02G0275900 Rorug02G0275900 Rorug02G0305400 Rorug02G0311800 Rorug02G0350400 Rorug02G0381300 Rorug03G0136700 Rorug03G0181900 Rorug03G0268000 Rorug04G0301600 Rorug05G0175100 Rorug05G0250700 Rorug05G0298200 Rorug05G0596000 Rorug06G0029500 Rorug07G0094300 Rorug07G0094300 Rorug07G0095400 Rorug07G0140100
rosa_samantha Rh1AG099200 Rh1AG190500 Rh1BG078900 Rh1BG079000 Rh1BG079100 Rh1CG084600 Rh1CG084700 Rh1CG095300 Rh1CG175900 Rh1DG103300 Rh1DG150400 Rh2AG079300 Rh2AG272400 Rh2AG464800 Rh2AG507400 Rh2DG078300 Rh2DG078400 Rh3CG206900 Rh3CG295400 Rh3DG206800 Rh3DG356200 Rh4CG071500 Rh4CG179200 Rh4DG064700 Rh5CG362400 Rh7AG212300 Rh7AG226200 Rh7BG222200
rosa_wichuraiana Rw0G009990 Rw0G011260 Rw0G011270 Rw0G012910 Rw0G013740 Rw1G007740 Rw1G013050 Rw1G014230 Rw2G014270 Rw3G012720 Rw3G028110 Rw4G006630 Rw4G015270 Rw4G016160 Rw4G031380 Rw5G011440 Rw5G029180 Rw5G048360 Rw5G048430 Rw5G048780 Rw6G005250 Rw6G006390 Rw7G002840 Rw7G014080 Rw7G019650 Rw7G032790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 540
AasI GACNNNNNNGTC 1 cut(s) 1593
AatII GACGTC 1 cut(s) 1253
AccB1I GGYRCC 1 cut(s) 2478
AccBSI CCGCTC 1 cut(s) 617
AccI GTMKAC 1 cut(s) 2188
AccII CGCG 1 cut(s) 129
AciI CCGC 4 cut(s) 36, 615, 1714, 1905
AclWI GGATC 2 cut(s) 1616, 1712
AcoI YGGCCR 2 cut(s) 1240, 1395
AcsI RAATTY 1 cut(s) 74
AcuI CTGAAG 2 cut(s) 341, 441
AcyI GRCGYC 1 cut(s) 1250
AfaI GTAC 6 cut(s) 292, 793, 1652, 1756, 2127, 2500
AfeI AGCGCT 1 cut(s) 943
AfiI CCNNNNNNNGG 3 cut(s) 733, 2043, 2276
AflIII ACRYGT 5 cut(s) 52, 1003, 1026, 1226, 2281
AgsI TTSAA 8 cut(s) 559, 565, 1163, 1186, 1432, 2023, 2143, 2537
AhlI ACTAGT 1 cut(s) 1592
AjnI CCWGG 2 cut(s) 2443, 2494
AjuI GAANNNNNNNTTGG 4 cut(s) 422, 454, 1484, 1516
AluBI AGCT 8 cut(s) 333, 645, 812, 1126, 1892, 2087, 2209, 2570
AluI AGCT 8 cut(s) 333, 645, 812, 1126, 1892, 2087, 2209, 2570
Alw21I GWGCWC 2 cut(s) 647, 1472
Alw26I GTCTC 6 cut(s) 99, 743, 1085, 1980, 2342, 2470
AlwI GGATC 2 cut(s) 1616, 1712
AlwNI CAGNNNCTG 1 cut(s) 2501
Aor51HI AGCGCT 1 cut(s) 943
AoxI GGCC 3 cut(s) 1240, 1395, 1860
ApeKI GCWGC 2 cut(s) 812, 1807
ApoI RAATTY 1 cut(s) 74
ArsI GACNNNNNNTTYG 2 cut(s) 2542, 2574
Asp700I GAANNNNTTC 3 cut(s) 1335, 2180, 2532
AspLEI GCGC 3 cut(s) 944, 1966, 2385
AsuHPI GGTGA 9 cut(s) 83, 166, 350, 676, 677, 796, 1878, 2069, 2117
AsuII TTCGAA 1 cut(s) 1317
BaeGI GKGCMC 2 cut(s) 970, 1101
BalI TGGCCA 1 cut(s) 1242
BanI GGYRCC 1 cut(s) 2478
BanII GRGCYC 2 cut(s) 127, 647
BauI CACGAG 2 cut(s) 406, 1100
BbsI GAAGAC 3 cut(s) 849, 890, 1371
Bbv12I GWGCWC 2 cut(s) 647, 1472
BbvI GCAGC 2 cut(s) 799, 1819
BccI CCATC 6 cut(s) 497, 1714, 1730, 2054, 2089, 2498
BceAI ACGGC 2 cut(s) 1098, 1382
BciT130I CCWGG 2 cut(s) 2445, 2496
BciVI GTATCC 2 cut(s) 169, 1462
BcoDI GTCTC 6 cut(s) 99, 743, 1085, 1980, 2342, 2470
BcuI ACTAGT 1 cut(s) 1592
BfaI CTAG 2 cut(s) 693, 1593
BfmI CTRYAG 1 cut(s) 903
BfoI RGCGCY 3 cut(s) 945, 1967, 2386
BfuI GTATCC 2 cut(s) 169, 1462
BglII AGATCT 1 cut(s) 670
BisI GCNGC 3 cut(s) 813, 1808, 1905
BlsI GCNGC 3 cut(s) 814, 1809, 1906
Bme1390I CCNGG 2 cut(s) 2445, 2496
BmiI GGNNCC 1 cut(s) 2480
BmrFI CCNGG 2 cut(s) 2445, 2496
BmsI GCATC 7 cut(s) 296, 579, 820, 1954, 2300, 2458, 2571
BpiI GAAGAC 3 cut(s) 849, 890, 1371
Bpu10I CCTNAGC 1 cut(s) 1967
Bpu14I TTCGAA 1 cut(s) 1317
BpuEI CTTGAG 3 cut(s) 1255, 1403, 2559
BsaAI YACGTR 2 cut(s) 710, 1684
BsaBI GATNNNNATC 1 cut(s) 161
BsaHI GRCGYC 1 cut(s) 1250
BsaJI CCNNGG 2 cut(s) 1306, 2444
Bsc4I CCNNNNNNNGG 3 cut(s) 733, 2043, 2276
Bse1I ACTGG 1 cut(s) 73
Bse3DI GCAATG 4 cut(s) 1458, 1834, 2366, 2391
Bse8I GATNNNNATC 1 cut(s) 161
BseBI CCWGG 2 cut(s) 2445, 2496
BseDI CCNNGG 2 cut(s) 1306, 2444
BseGI GGATG 9 cut(s) 311, 892, 1725, 1741, 1919, 1945, 1977, 2449, 2569
BseJI GATNNNNATC 1 cut(s) 161
BseLI CCNNNNNNNGG 3 cut(s) 733, 2043, 2276
BseMI GCAATG 4 cut(s) 1458, 1834, 2366, 2391
BseMII CTCAG 5 cut(s) 60, 660, 822, 1941, 1981
BseNI ACTGG 1 cut(s) 73
BseRI GAGGAG 4 cut(s) 424, 440, 1781, 1968
BseSI GKGCMC 2 cut(s) 970, 1101
BseXI GCAGC 2 cut(s) 799, 1819
BseYI CCCAGC 1 cut(s) 26
Bsh1236I CGCG 1 cut(s) 129
BshFI GGCC 3 cut(s) 1242, 1397, 1862
BshNI GGYRCC 1 cut(s) 2478
BsiHKAI GWGCWC 2 cut(s) 647, 1472
BslFI GGGAC 1 cut(s) 2292
BslI CCNNNNNNNGG 3 cut(s) 733, 2043, 2276
BsmAI GTCTC 6 cut(s) 99, 743, 1085, 1980, 2342, 2470
BsmBI CGTCTC 2 cut(s) 99, 743
BsmFI GGGAC 1 cut(s) 2292
BsmI GAATGC 3 cut(s) 577, 713, 2152
BsnI GGCC 3 cut(s) 1242, 1397, 1862
Bsp119I TTCGAA 1 cut(s) 1317
Bsp1286I GDGCHC 5 cut(s) 127, 647, 970, 1101, 1472
Bsp143I GATC 8 cut(s) 57, 581, 670, 774, 1042, 1621, 1704, 2313
Bsp68I TCGCGA 1 cut(s) 129
BspACI CCGC 4 cut(s) 36, 615, 1714, 1905
BspANI GGCC 3 cut(s) 1242, 1397, 1862
BspCNI CTCAG 5 cut(s) 59, 659, 821, 1940, 1980
BspFNI CGCG 1 cut(s) 129
BspHI TCATGA 2 cut(s) 936, 1059
BspLI GGNNCC 1 cut(s) 2480
BspPI GGATC 2 cut(s) 1616, 1712
BspT104I TTCGAA 1 cut(s) 1317
BspT107I GGYRCC 1 cut(s) 2478
BsrBI CCGCTC 1 cut(s) 617
BsrDI GCAATG 4 cut(s) 1458, 1834, 2366, 2391
BsrI ACTGG 1 cut(s) 73
BssECI CCNNGG 2 cut(s) 1306, 2444
BssMI GATC 8 cut(s) 57, 581, 670, 774, 1042, 1621, 1704, 2313
BssNI GRCGYC 1 cut(s) 1250
BssSI CACGAG 2 cut(s) 406, 1100
Bst2BI CACGAG 2 cut(s) 406, 1100
Bst2UI CCWGG 2 cut(s) 2445, 2496
Bst4CI ACNGT 6 cut(s) 20, 555, 907, 1616, 2362, 2600
Bst6I CTCTTC 1 cut(s) 417
BstACI GRCGYC 1 cut(s) 1250
BstAPI GCANNNNNTGC 2 cut(s) 598, 2455
BstBAI YACGTR 2 cut(s) 710, 1684
BstBI TTCGAA 1 cut(s) 1317
BstC8I GCNNGC 4 cut(s) 43, 127, 131, 2217
BstDEI CTNAG 6 cut(s) 46, 646, 808, 834, 1927, 1967
BstENI CCTNNNNNAGG 1 cut(s) 2041
BstF5I GGATG 9 cut(s) 311, 892, 1725, 1741, 1919, 1945, 1977, 2449, 2569
BstFNI CGCG 1 cut(s) 129
BstH2I RGCGCY 3 cut(s) 945, 1967, 2386
BstHHI GCGC 3 cut(s) 944, 1966, 2385
BstKTI GATC 8 cut(s) 60, 584, 673, 777, 1045, 1624, 1707, 2316
BstMAI GTCTC 6 cut(s) 99, 743, 1085, 1980, 2342, 2470
BstMBI GATC 8 cut(s) 57, 581, 670, 774, 1042, 1621, 1704, 2313
BstMWI GCNNNNNNNGC 7 cut(s) 42, 598, 818, 1564, 2002, 2127, 2455
BstNI CCWGG 2 cut(s) 2445, 2496
BstNSI RCATGY 6 cut(s) 596, 1007, 1030, 1157, 1230, 2219
BstSCI CCNGG 2 cut(s) 2443, 2494
BstSFI CTRYAG 1 cut(s) 903
BstSLI GKGCMC 2 cut(s) 970, 1101
BstUI CGCG 1 cut(s) 129
BstV1I GCAGC 2 cut(s) 799, 1819
BstV2I GAAGAC 3 cut(s) 849, 890, 1371
BstX2I RGATCY 2 cut(s) 670, 1704
BstXI CCANNNNNNTGG 1 cut(s) 1504
BstYI RGATCY 2 cut(s) 670, 1704
BsuI GTATCC 2 cut(s) 169, 1462
BsuRI GGCC 3 cut(s) 1242, 1397, 1862
BtgZI GCGATG 1 cut(s) 1743
BtsCI GGATG 9 cut(s) 311, 892, 1725, 1741, 1919, 1945, 1977, 2449, 2569
BtsI GCAGTG 1 cut(s) 441
BtsIMutI CAGTG 3 cut(s) 66, 441, 2416
BtuMI TCGCGA 1 cut(s) 129
Cac8I GCNNGC 4 cut(s) 43, 127, 131, 2217
CaiI CAGNNNCTG 1 cut(s) 2501
CciI TCATGA 2 cut(s) 936, 1059
CfoI GCGC 3 cut(s) 944, 1966, 2385
CseI GACGC 1 cut(s) 1551
CsiI ACCWGGT 1 cut(s) 2494
Csp6I GTAC 6 cut(s) 291, 792, 1651, 1755, 2126, 2499
CspCI CAANNNNNGTGG 2 cut(s) 1242, 1277
CviQI GTAC 6 cut(s) 291, 792, 1651, 1755, 2126, 2499
DdeI CTNAG 6 cut(s) 46, 646, 808, 834, 1927, 1967
DpnI GATC 8 cut(s) 59, 583, 672, 776, 1044, 1623, 1706, 2315
DpnII GATC 8 cut(s) 57, 581, 670, 774, 1042, 1621, 1704, 2313
DrdI GACNNNNNNGTC 1 cut(s) 1593
DseDI GACNNNNNNGTC 1 cut(s) 1593
EaeI YGGCCR 2 cut(s) 1240, 1395
Eam1104I CTCTTC 1 cut(s) 417
EarI CTCTTC 1 cut(s) 417
Ecl136II GAGCTC 1 cut(s) 645
Eco24I GRGCYC 2 cut(s) 127, 647
Eco32I GATATC 1 cut(s) 1148
Eco47III AGCGCT 1 cut(s) 943
Eco53kI GAGCTC 1 cut(s) 645
Eco57I CTGAAG 2 cut(s) 341, 441
EcoICRI GAGCTC 1 cut(s) 645
EcoNI CCTNNNNNAGG 1 cut(s) 2041
EcoRI GAATTC 1 cut(s) 74
EcoRII CCWGG 2 cut(s) 2443, 2494
EcoRV GATATC 1 cut(s) 1148
EcoT22I ATGCAT 4 cut(s) 594, 1236, 1422, 2217
EcoT38I GRGCYC 2 cut(s) 127, 647
Esp3I CGTCTC 2 cut(s) 99, 743
FaqI GGGAC 1 cut(s) 2292
FauNDI CATATG 2 cut(s) 854, 2248
FblI GTMKAC 1 cut(s) 2188
Fnu4HI GCNGC 3 cut(s) 813, 1808, 1905
FokI GGATG 9 cut(s) 318, 899, 1732, 1748, 1906, 1932, 1984, 2436, 2576
FriOI GRGCYC 2 cut(s) 127, 647
Fsp4HI GCNGC 3 cut(s) 813, 1808, 1905
FspBI CTAG 2 cut(s) 693, 1593
GlaI GCGC 3 cut(s) 943, 1965, 2384
GluI GCNGC 3 cut(s) 813, 1808, 1905
GsaI CCCAGC 1 cut(s) 30
HaeII RGCGCY 3 cut(s) 945, 1967, 2386
HaeIII GGCC 3 cut(s) 1242, 1397, 1862
HgaI GACGC 1 cut(s) 1551
HhaI GCGC 3 cut(s) 944, 1966, 2385
Hin1I GRCGYC 1 cut(s) 1250
Hin6I GCGC 3 cut(s) 942, 1964, 2383
HinP1I GCGC 3 cut(s) 942, 1964, 2383
HincII GTYRAC 2 cut(s) 2203, 2262
HindII GTYRAC 2 cut(s) 2203, 2262
HinfI GANTC 8 cut(s) 507, 682, 1336, 1484, 1771, 1784, 2111, 2237
HphI GGTGA 9 cut(s) 83, 166, 350, 676, 677, 796, 1878, 2069, 2117
Hpy166II GTNNAC 4 cut(s) 379, 2189, 2203, 2262
Hpy188III TCNNGA 7 cut(s) 128, 166, 265, 937, 1060, 1969, 2576
Hpy8I GTNNAC 4 cut(s) 379, 2189, 2203, 2262
Hpy99I CGWCG 3 cut(s) 1252, 1403, 1545
HpyAV CCTTC 5 cut(s) 316, 814, 1259, 1426, 1954
HpyCH4III ACNGT 6 cut(s) 20, 555, 907, 1616, 2362, 2600
HpyCH4IV ACGT 7 cut(s) 52, 709, 752, 1250, 1683, 2283, 2530
HpyF10VI GCNNNNNNNGC 7 cut(s) 42, 598, 818, 1564, 2002, 2127, 2455
HpyF3I CTNAG 6 cut(s) 46, 646, 808, 834, 1927, 1967
HpySE526I ACGT 7 cut(s) 52, 709, 752, 1250, 1683, 2283, 2530
Hsp92I GRCGYC 1 cut(s) 1250
HspAI GCGC 3 cut(s) 942, 1964, 2383
Kzo9I GATC 8 cut(s) 57, 581, 670, 774, 1042, 1621, 1704, 2313
LmnI GCTCC 2 cut(s) 642, 2118
Lsp1109I GCAGC 2 cut(s) 799, 1819
LweI GCATC 7 cut(s) 296, 579, 820, 1954, 2300, 2458, 2571
MabI ACCWGGT 1 cut(s) 2494
MaeI CTAG 2 cut(s) 693, 1593
MaeII ACGT 7 cut(s) 52, 709, 752, 1250, 1683, 2283, 2530
MaeIII GTNAC 3 cut(s) 784, 1667, 1909
MalI GATC 8 cut(s) 59, 583, 672, 776, 1044, 1623, 1706, 2315
MbiI CCGCTC 1 cut(s) 617
MboI GATC 8 cut(s) 57, 581, 670, 774, 1042, 1621, 1704, 2313
MboII GAAGA 9 cut(s) 280, 434, 854, 890, 1183, 1376, 1501, 1645, 1980
MfeI CAATTG 1 cut(s) 1473
MflI RGATCY 2 cut(s) 670, 1704
MhlI GDGCHC 5 cut(s) 127, 647, 970, 1101, 1472
MlsI TGGCCA 1 cut(s) 1242
MluNI TGGCCA 1 cut(s) 1242
MlyI GAGTC 4 cut(s) 501, 676, 1493, 1793
MmeI TCCRAC 5 cut(s) 864, 1029, 1049, 1429, 1743
Mox20I TGGCCA 1 cut(s) 1242
Mph1103I ATGCAT 4 cut(s) 594, 1236, 1422, 2217
MroXI GAANNNNTTC 3 cut(s) 1335, 2180, 2532
MscI TGGCCA 1 cut(s) 1242
MseI TTAA 2 cut(s) 96, 1709
Msp20I TGGCCA 1 cut(s) 1242
MspA1I CMGCKG 2 cut(s) 812, 1892
MspR9I CCNGG 2 cut(s) 2445, 2496
MunI CAATTG 1 cut(s) 1473
Mva1269I GAATGC 3 cut(s) 577, 713, 2152
MvaI CCWGG 2 cut(s) 2445, 2496
MvnI CGCG 1 cut(s) 129
MwoI GCNNNNNNNGC 7 cut(s) 42, 598, 818, 1564, 2002, 2127, 2455
NdeI CATATG 2 cut(s) 854, 2248
NdeII GATC 8 cut(s) 57, 581, 670, 774, 1042, 1621, 1704, 2313
NlaIV GGNNCC 1 cut(s) 2480
NmeAIII GCCGAG 1 cut(s) 1331
NmuCI GTSAC 3 cut(s) 784, 1667, 1909
NruI TCGCGA 1 cut(s) 129
NsiI ATGCAT 4 cut(s) 594, 1236, 1422, 2217
NspI RCATGY 6 cut(s) 596, 1007, 1030, 1157, 1230, 2219
NspV TTCGAA 1 cut(s) 1317
PaeI GCATGC 1 cut(s) 2219
PagI TCATGA 2 cut(s) 936, 1059
PciI ACATGT 3 cut(s) 1003, 1026, 1226
PcsI WCGNNNNNNNCGW 1 cut(s) 2536
PctI GAATGC 3 cut(s) 577, 713, 2152
PdmI GAANNNNTTC 3 cut(s) 1335, 2180, 2532
PfeI GAWTC 4 cut(s) 1336, 1771, 2111, 2237
PflFI GACNNNGTC 1 cut(s) 2362
PkrI GCNGC 3 cut(s) 814, 1809, 1906
PleI GAGTC 4 cut(s) 501, 676, 1492, 1792
PpsI GAGTC 4 cut(s) 501, 676, 1492, 1792
Ppu21I YACGTR 2 cut(s) 710, 1684
PscI ACATGT 3 cut(s) 1003, 1026, 1226
PsiI TTATAA 1 cut(s) 540
Psp124BI GAGCTC 1 cut(s) 647
Psp6I CCWGG 2 cut(s) 2443, 2494
PspFI CCCAGC 1 cut(s) 26
PspGI CCWGG 2 cut(s) 2443, 2494
PspN4I GGNNCC 1 cut(s) 2480
PstNI CAGNNNCTG 1 cut(s) 2501
PsuI RGATCY 2 cut(s) 670, 1704
PsyI GACNNNGTC 1 cut(s) 2362
PvuII CAGCTG 2 cut(s) 812, 1892
RruI TCGCGA 1 cut(s) 129
RsaI GTAC 6 cut(s) 292, 793, 1652, 1756, 2127, 2500
RsaNI GTAC 6 cut(s) 291, 792, 1651, 1755, 2126, 2499
SacI GAGCTC 1 cut(s) 647
SaqAI TTAA 2 cut(s) 96, 1709
SatI GCNGC 3 cut(s) 813, 1808, 1905
Sau3AI GATC 8 cut(s) 57, 581, 670, 774, 1042, 1621, 1704, 2313
SchI GAGTC 4 cut(s) 501, 676, 1493, 1793
ScrFI CCNGG 2 cut(s) 2445, 2496
SduI GDGCHC 5 cut(s) 127, 647, 970, 1101, 1472
SexAI ACCWGGT 1 cut(s) 2494
SfaNI GCATC 7 cut(s) 296, 579, 820, 1954, 2300, 2458, 2571
SfcI CTRYAG 1 cut(s) 903
SfuI TTCGAA 1 cut(s) 1317
SmlI CTYRAG 3 cut(s) 1270, 1382, 2574
SmoI CTYRAG 3 cut(s) 1270, 1382, 2574
SpeI ACTAGT 1 cut(s) 1592
SphI GCATGC 1 cut(s) 2219
SsiI CCGC 4 cut(s) 36, 615, 1714, 1905
SspMI CTAG 2 cut(s) 693, 1593
SstI GAGCTC 1 cut(s) 647
StyD4I CCNGG 2 cut(s) 2443, 2494
TaaI ACNGT 6 cut(s) 20, 555, 907, 1616, 2362, 2600
TaiI ACGT 7 cut(s) 55, 712, 755, 1253, 1686, 2286, 2533
TaqI TCGA 6 cut(s) 60, 1247, 1317, 1487, 1540, 2077
TatI WGTACW 3 cut(s) 791, 1650, 1754
TauI GCSGC 1 cut(s) 1907
TfiI GAWTC 4 cut(s) 1336, 1771, 2111, 2237
Tru1I TTAA 2 cut(s) 96, 1709
Tru9I TTAA 2 cut(s) 96, 1709
TscAI CASTG 3 cut(s) 73, 441, 2416
TseFI GTSAC 3 cut(s) 784, 1667, 1909
TseI GCWGC 2 cut(s) 812, 1807
Tsp45I GTSAC 3 cut(s) 784, 1667, 1909
TspDTI ATGAA 8 cut(s) 542, 855, 903, 938, 1048, 1405, 1440, 1973
TspRI CASTG 3 cut(s) 73, 441, 2416
Tth111I GACNNNGTC 1 cut(s) 2362
XagI CCTNNNNNAGG 1 cut(s) 2041
XapI RAATTY 1 cut(s) 74
XceI RCATGY 6 cut(s) 596, 1007, 1030, 1157, 1230, 2219
XcmI CCANNNNNNNNNTGG 3 cut(s) 500, 2253, 2272
XmiI GTMKAC 1 cut(s) 2188
XmnI GAANNNNTTC 3 cut(s) 1335, 2180, 2532
XspI CTAG 2 cut(s) 693, 1593
ZraI GACGTC 1 cut(s) 1251
Zsp2I ATGCAT 4 cut(s) 594, 1236, 1422, 2217
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.