Rh3DG206800

protein FAR1-RELATED SEQUENCE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0000143
Physical Location & Seq
Forward (+)
18906431 .. 18912629
6199 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG206800.1

Sequence Viewer

Length: 672 bp
ATGCGCGGAAATCAGAGAATAGTGGTCTTTGCTCACGTGGGAAGTAGTCCCATTCTGATCACAACGTCAAACCCATTGACGTGCATAAGAGCTATTGCAACTAGGCTTGATGTTCTTCCACCGCCCGTCAAGAAACTGGACAGCTATCTTGAACGACAACTACACGAGCAGCACAGTGCAAAGATTGGGGCAGACTTCAACAGAGCTATGTCACAAGTACCACTTGAAAAGGTTGTTCATGCATCTCCTAGTACTGTGTTGCCTTCTACGAAATCAAATAAGCATCCAGAGAAAAATCAGCCTATCTGCGTGACTCAAAGCACTTCACCATTTGAGCTAACACAAAAATATACTGTGCAATTTGTTTTCGGTATGAGGCCTTACATTCTAGGTTCATTTGATGTTGAGTCTGATGAACTGCCTGAAATTGGAATTGGTTTTGTTAACGGAGACCACTTTGTGCAGGTGTCTTTGCAAGCGGGATGCCCATTACCACCAATCCCACCAAATTGGTACCCCCATGCTGATGATAAAGCAAGATCATTATACAATAGATACAAGGATCGTCTGCATCAATATACCCAAATACCCCATCCAGAAAGAGTTACTGCTATTTCCGAAATTATAACTCTTGAGACTGATGAGACTATAACATACGACAGCAAAATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AFT FAR1 MULE

Protein Analysis

223

Amino Acids

25.07

Weight (kDa)

6.75

Isoelectric Point (pI)

38.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000143)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G76710 AT1G76710 AT1G76710 AT1G76710
fragaria_vesca FvH4_1g20063 FvH4_2g15231 FvH4_3g04011 FvH4_3g28681 FvH4_4g01411 FvH4_4g10181 FvH4_4g15922 FvH4_4g16651 FvH4_4g16652 FvH4_5g13892 FvH4_5g13893 FvH4_5g20623 FvH4_5g20623 FvH4_5g20623 FvH4_5g20623 FvH4_5g25511 FvH4_6g12551 FvH4_6g12552 FvH4_6g38841 FvH4_7g04391
malus_domestica MD05G1031300.v1.1 MD05G1031400.v1.1 MD05G1031500.v1.1 MD08G1164400.v1.1 MD10G1032900.v1.1 MD10G1033000.v1.1 MD10G1033100.v1.1
prunus_persica Prupe.3G240700_v2.0.a1 Prupe.7G144600_v2.0.a1 Prupe.8G038500_v2.0.a1 Prupe.8G038500_v2.0.a1
pyrus_communis pycom05g02250 pycom05g02260 pycom05g02270 pycom05g02280 pycom08g14160 pycom10g02100 pycom10g02110 pycom10g02130
rosa_chinensis RchiOBHm_Chr1g0329481 RchiOBHm_Chr1g0329491 RchiOBHm_Chr1g0341531 RchiOBHm_Chr3g0464811 RchiOBHm_Chr3g0494701 RchiOBHm_Chr3g0497501 RchiOBHm_Chr4g0385841 RchiOBHm_Chr5g0061181 RchiOBHm_Chr6g0263001 RchiOBHm_Chr7g0193111 RchiOBHm_Chr7g0206281 RchiOBHm_Chr7g0206311
rosa_laevigata RLG00000018908 RLG00000028528 RLG00000028803 RLG00000029882 RLG00000029883 RLG00000030361
rosa_multiflora Rmu_co8196328.1_g000001 Rmu_co8259135.1_g000001 Rmu_co8269185.1_g000001 Rmu_sc0000076.1_g000019 Rmu_sc0000311.1_g000007 Rmu_sc0000429.1_g000038 Rmu_sc0000429.1_g000039 Rmu_sc0000429.1_g000040 Rmu_sc0000511.1_g000005 Rmu_sc0000539.1_g000054 Rmu_sc0000566.1_g000039 Rmu_sc0000805.1_g000032 Rmu_sc0000870.1_g000073 Rmu_sc0000870.1_g000074 Rmu_sc0001010.1_g000018 Rmu_sc0001083.1_g000013 Rmu_sc0001114.1_g000011 Rmu_sc0001702.1_g000027 Rmu_sc0001779.1_g000012 Rmu_sc0002923.1_g000036 Rmu_sc0003242.1_g000011 Rmu_sc0003291.1_g000036 Rmu_sc0003393.1_g000012 Rmu_sc0003872.1_g000016 Rmu_sc0003872.1_g000017 Rmu_sc0003872.1_g000018 Rmu_sc0004084.1_g000020 Rmu_sc0004386.1_g000005 Rmu_sc0004622.1_g000005 Rmu_sc0004742.1_g000021 Rmu_sc0004755.1_g000020 Rmu_sc0004805.1_g000036 Rmu_sc0005065.1_g000006 Rmu_sc0005177.1_g000004 Rmu_sc0006373.1_g000003 Rmu_sc0006373.1_g000004 Rmu_sc0007121.1_g000002 Rmu_sc0007943.1_g000003 Rmu_sc0010368.1_g000006 Rmu_sc0010543.1_g000001 Rmu_sc0012591.1_g000006 Rmu_sc0013504.1_g000009 Rmu_sc0015025.1_g000001 Rmu_sc0016170.1_g000001 Rmu_sc0017156.1_g000001 Rmu_sc0026439.1_g000001
rosa_roxburghii Rroxscaffold_175G00432280 Rroxscaffold_1G00030190 Rroxscaffold_1G00030880 Rroxscaffold_2G00090520 Rroxscaffold_3G00227940 Rroxscaffold_3G00233400 Rroxscaffold_3G00238500 Rroxscaffold_3G00251650 Rroxscaffold_4G00301570 Rroxscaffold_4G00321040 Rroxscaffold_5G00350880 Rroxscaffold_7G00184400
rosa_rugosa Rorug01G0080800 Rorug01G0080900 Rorug01G0193900 Rorug02G0275900 Rorug02G0275900 Rorug02G0275900 Rorug02G0305400 Rorug02G0311800 Rorug02G0350400 Rorug02G0381300 Rorug03G0136700 Rorug03G0181900 Rorug03G0268000 Rorug04G0301600 Rorug05G0175100 Rorug05G0250700 Rorug05G0298200 Rorug05G0596000 Rorug06G0029500 Rorug07G0094300 Rorug07G0094300 Rorug07G0095400 Rorug07G0140100
rosa_samantha Rh1AG099200 Rh1AG190500 Rh1BG078900 Rh1BG079000 Rh1BG079100 Rh1CG084600 Rh1CG084700 Rh1CG095300 Rh1CG175900 Rh1DG103300 Rh1DG150400 Rh2AG079300 Rh2AG272400 Rh2AG464800 Rh2AG507400 Rh2DG078300 Rh2DG078400 Rh3CG206900 Rh3CG295400 Rh3DG206800 Rh3DG356200 Rh4CG071500 Rh4CG179200 Rh4DG064700 Rh5CG362400 Rh7AG212300 Rh7AG226200 Rh7BG222200
rosa_wichuraiana Rw0G009990 Rw0G011260 Rw0G011270 Rw0G012910 Rw0G013740 Rw1G007740 Rw1G013050 Rw1G014230 Rw2G014270 Rw3G012720 Rw3G028110 Rw4G006630 Rw4G015270 Rw4G016160 Rw4G031380 Rw5G011440 Rw5G029180 Rw5G048360 Rw5G048430 Rw5G048780 Rw6G005250 Rw6G006390 Rw7G002840 Rw7G014080 Rw7G019650 Rw7G032790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 626
AarI CACCTGC 1 cut(s) 454
Acc36I ACCTGC 1 cut(s) 454
Acc65I GGTACC 1 cut(s) 513
AccB1I GGYRCC 1 cut(s) 513
AccII CGCG 1 cut(s) 6
AciI CCGC 3 cut(s) 6, 122, 479
AclWI GGATC 1 cut(s) 570
AcvI CACGTG 1 cut(s) 37
AdeI CACNNNGTG 1 cut(s) 460
AfaI GTAC 3 cut(s) 219, 253, 515
AfiI CCNNNNNNNGG 1 cut(s) 428
AgsI TTSAA 3 cut(s) 152, 199, 227
AjiI CACGTC 1 cut(s) 81
AjuI GAANNNNNNNTTGG 2 cut(s) 417, 449
AluBI AGCT 4 cut(s) 92, 144, 206, 337
AluI AGCT 4 cut(s) 92, 144, 206, 337
Alw26I GTCTC 3 cut(s) 444, 629, 638
AlwI GGATC 1 cut(s) 570
AoxI GGCC 1 cut(s) 377
ApeKI GCWGC 1 cut(s) 169
Asp718I GGTACC 1 cut(s) 513
AspLEI GCGC 1 cut(s) 6
AsuHPI GGTGA 1 cut(s) 318
BanI GGYRCC 1 cut(s) 513
BauI CACGAG 1 cut(s) 164
BbrPI CACGTG 1 cut(s) 37
BbvI GCAGC 1 cut(s) 181
BccI CCATC 1 cut(s) 600
BclI TGATCA 1 cut(s) 57
BcoDI GTCTC 3 cut(s) 444, 629, 638
BfaI CTAG 3 cut(s) 102, 249, 389
BfuAI ACCTGC 1 cut(s) 454
BisI GCNGC 1 cut(s) 170
BlsI GCNGC 1 cut(s) 171
BmcAI AGTACT 1 cut(s) 253
BmgBI CACGTC 1 cut(s) 81
BmiI GGNNCC 1 cut(s) 515
BmsI GCATC 4 cut(s) 251, 292, 473, 580
BpuEI CTTGAG 1 cut(s) 653
BsaAI YACGTR 1 cut(s) 37
BsaI GGTCTC 1 cut(s) 444
Bsc4I CCNNNNNNNGG 1 cut(s) 428
Bse1I ACTGG 1 cut(s) 141
BseGI GGATG 3 cut(s) 283, 488, 592
BseLI CCNNNNNNNGG 1 cut(s) 428
BseNI ACTGG 1 cut(s) 141
BseXI GCAGC 1 cut(s) 181
BsgI GTGCAG 1 cut(s) 482
Bsh1236I CGCG 1 cut(s) 6
BshFI GGCC 1 cut(s) 379
BshNI GGYRCC 1 cut(s) 513
BslFI GGGAC 1 cut(s) 33
BslI CCNNNNNNNGG 1 cut(s) 428
BsmAI GTCTC 3 cut(s) 444, 629, 638
BsmFI GGGAC 1 cut(s) 33
BsnI GGCC 1 cut(s) 379
Bso31I GGTCTC 1 cut(s) 444
Bsp143I GATC 3 cut(s) 57, 539, 562
BspACI CCGC 3 cut(s) 6, 122, 479
BspANI GGCC 1 cut(s) 379
BspFNI CGCG 1 cut(s) 6
BspLI GGNNCC 1 cut(s) 515
BspMI ACCTGC 1 cut(s) 454
BspPI GGATC 1 cut(s) 570
BspT107I GGYRCC 1 cut(s) 513
BspTNI GGTCTC 1 cut(s) 444
BsrI ACTGG 1 cut(s) 141
BssMI GATC 3 cut(s) 57, 539, 562
BssSI CACGAG 1 cut(s) 164
Bst2BI CACGAG 1 cut(s) 164
Bst4CI ACNGT 3 cut(s) 176, 256, 355
BstBAI YACGTR 1 cut(s) 37
BstC8I GCNNGC 1 cut(s) 477
BstF5I GGATG 3 cut(s) 283, 488, 592
BstFNI CGCG 1 cut(s) 6
BstHHI GCGC 1 cut(s) 6
BstKTI GATC 3 cut(s) 60, 542, 565
BstMAI GTCTC 3 cut(s) 444, 629, 638
BstMBI GATC 3 cut(s) 57, 539, 562
BstUI CGCG 1 cut(s) 6
BstV1I GCAGC 1 cut(s) 181
BstXI CCANNNNNNTGG 1 cut(s) 510
BsuRI GGCC 1 cut(s) 379
BtrI CACGTC 1 cut(s) 81
BtsCI GGATG 3 cut(s) 283, 488, 592
BtsIMutI CAGTG 1 cut(s) 181
BveI ACCTGC 1 cut(s) 454
Cac8I GCNNGC 1 cut(s) 477
CfoI GCGC 1 cut(s) 6
Csp6I GTAC 3 cut(s) 218, 252, 514
CviAII CATG 2 cut(s) 239, 521
CviJI RGCY 7 cut(s) 92, 106, 144, 206, 301, 337, 379
CviKI_1 RGCY 7 cut(s) 92, 106, 144, 206, 301, 337, 379
CviQI GTAC 3 cut(s) 218, 252, 514
DpnI GATC 3 cut(s) 59, 541, 564
DpnII GATC 3 cut(s) 57, 539, 562
DraIII CACNNNGTG 1 cut(s) 460
Eco147I AGGCCT 1 cut(s) 379
Eco31I GGTCTC 1 cut(s) 444
Eco72I CACGTG 1 cut(s) 37
EcoT22I ATGCAT 1 cut(s) 244
FaeI CATG 2 cut(s) 242, 524
FalI AAGNNNNNCTT 2 cut(s) 207, 239
FaqI GGGAC 1 cut(s) 33
FatI CATG 2 cut(s) 238, 520
FauI CCCGC 1 cut(s) 472
FbaI TGATCA 1 cut(s) 57
Fnu4HI GCNGC 1 cut(s) 170
FokI GGATG 3 cut(s) 270, 495, 579
Fsp4HI GCNGC 1 cut(s) 170
FspBI CTAG 3 cut(s) 102, 249, 389
GlaI GCGC 1 cut(s) 5
GluI GCNGC 1 cut(s) 170
HaeIII GGCC 1 cut(s) 379
HhaI GCGC 1 cut(s) 6
Hin1II CATG 2 cut(s) 242, 524
Hin6I GCGC 1 cut(s) 4
HinP1I GCGC 1 cut(s) 4
HincII GTYRAC 1 cut(s) 445
HindII GTYRAC 1 cut(s) 445
HinfI GANTC 2 cut(s) 313, 407
HpaI GTTAAC 1 cut(s) 445
HphI GGTGA 1 cut(s) 318
Hpy166II GTNNAC 1 cut(s) 445
Hpy188I TCNGA 4 cut(s) 15, 57, 412, 619
Hpy188III TCNNGA 5 cut(s) 130, 149, 287, 596, 632
Hpy8I GTNNAC 1 cut(s) 445
HpyAV CCTTC 1 cut(s) 273
HpyCH4III ACNGT 3 cut(s) 176, 256, 355
HpyCH4IV ACGT 3 cut(s) 36, 65, 80
HpyCH4V TGCA 8 cut(s) 84, 98, 179, 242, 358, 463, 475, 571
HpySE526I ACGT 3 cut(s) 36, 65, 80
Hsp92II CATG 2 cut(s) 242, 524
HspAI GCGC 1 cut(s) 4
KpnI GGTACC 1 cut(s) 517
Ksp22I TGATCA 1 cut(s) 57
KspAI GTTAAC 1 cut(s) 445
Kzo9I GATC 3 cut(s) 57, 539, 562
LpnPI CCDG 5 cut(s) 122, 300, 435, 449, 609
Lsp1109I GCAGC 1 cut(s) 181
LweI GCATC 4 cut(s) 251, 292, 473, 580
MaeI CTAG 3 cut(s) 102, 249, 389
MaeII ACGT 3 cut(s) 36, 65, 80
MaeIII GTNAC 3 cut(s) 210, 310, 604
MalI GATC 3 cut(s) 59, 541, 564
MboI GATC 3 cut(s) 57, 539, 562
MboII GAAGA 1 cut(s) 107
MluCI AATT 5 cut(s) 359, 426, 432, 508, 621
MlyI GAGTC 2 cut(s) 307, 416
MnlI CCTC 1 cut(s) 369
Mph1103I ATGCAT 1 cut(s) 244
MseI TTAA 1 cut(s) 444
MslI CAYNNNNRTG 2 cut(s) 79, 525
MvnI CGCG 1 cut(s) 6
NdeII GATC 3 cut(s) 57, 539, 562
NlaIII CATG 2 cut(s) 242, 524
NlaIV GGNNCC 1 cut(s) 515
NmuCI GTSAC 2 cut(s) 210, 310
NsiI ATGCAT 1 cut(s) 244
PaqCI CACCTGC 1 cut(s) 454
PceI AGGCCT 1 cut(s) 379
PkrI GCNGC 1 cut(s) 171
PleI GAGTC 2 cut(s) 307, 415
PmaCI CACGTG 1 cut(s) 37
PmlI CACGTG 1 cut(s) 37
PpsI GAGTC 2 cut(s) 307, 415
Ppu21I YACGTR 1 cut(s) 37
PsiI TTATAA 1 cut(s) 626
PspCI CACGTG 1 cut(s) 37
PspN4I GGNNCC 1 cut(s) 515
PsrI GAACNNNNNNTAC 2 cut(s) 144, 176
RsaI GTAC 3 cut(s) 219, 253, 515
RsaNI GTAC 3 cut(s) 218, 252, 514
RseI CAYNNNNRTG 2 cut(s) 79, 525
SaqAI TTAA 1 cut(s) 444
SatI GCNGC 1 cut(s) 170
Sau3AI GATC 3 cut(s) 57, 539, 562
ScaI AGTACT 1 cut(s) 253
SchI GAGTC 2 cut(s) 307, 416
SfaNI GCATC 4 cut(s) 251, 292, 473, 580
SmiMI CAYNNNNRTG 2 cut(s) 79, 525
SmlI CTYRAG 1 cut(s) 632
SmoI CTYRAG 1 cut(s) 632
Sse9I AATT 5 cut(s) 359, 426, 432, 508, 621
SseBI AGGCCT 1 cut(s) 379
SsiI CCGC 3 cut(s) 6, 122, 479
SspMI CTAG 3 cut(s) 102, 249, 389
StuI AGGCCT 1 cut(s) 379
TaaI ACNGT 3 cut(s) 176, 256, 355
TaiI ACGT 3 cut(s) 39, 68, 83
TasI AATT 5 cut(s) 359, 426, 432, 508, 621
TatI WGTACW 1 cut(s) 251
Tru1I TTAA 1 cut(s) 444
Tru9I TTAA 1 cut(s) 444
TscAI CASTG 1 cut(s) 181
TseFI GTSAC 2 cut(s) 210, 310
TseI GCWGC 1 cut(s) 169
Tsp45I GTSAC 2 cut(s) 210, 310
TspDTI ATGAA 3 cut(s) 227, 384, 429
TspGWI ACGGA 1 cut(s) 462
TspRI CASTG 1 cut(s) 181
XspI CTAG 3 cut(s) 102, 249, 389
ZrmI AGTACT 1 cut(s) 253
Zsp2I ATGCAT 1 cut(s) 244
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.