Rmu_sc0000429.1_g000038

protein FAR1-RELATED SEQUENCE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000429.1
OG0000143
Physical Location & Seq
Forward (+)
174721 .. 175728
1008 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000429.1_g000038.1.cds

Sequence Viewer

Length: 1008 bp
atggtcagtataaatcatataaatctgagaaataattttgtgattgttatccgaaggtctgattctggaaaaattggcaataagaagaagatacctaaaataagattttgttgtgagaggaatggtcagtataaagcatataagtctttgaagtctgatataaatacacaagaatctgatgaagatagtcgaaaagaaaagcgtccgaggcttactggtacaaagaaatgtggatgcccattttcattaagaggcatcaatattgaaaatggagacgaatggaagttagaggtggtttgtggagtgcataatcatgctgcttcaaaataccttcatgggcactcattcgcaggtcgattgtcagaaaaagaaaattcattgttgatggatatgtccacaagtttaatgaggcctaaagagattttgacagccatcaagagaagaaatccgaagaatgtgacagcaatgaagacaatatataatgccagacaacggcataggacaaaaattagggctgggagaacacaaatgcagcaactgctaagtaacttgtttgagcacaagtatattgagcatcatagaagtgatggtgataaagtaacggatttgttttggtgtcacccttacagcattgagattttacgtacatttccacatgtacttatcatggactgcacttacaaaacaaatagatatcgctttcctcttctggagattgttgggatcacgtccactaacaagaccttcaacgttgcatttgcttacatatcaaaagagaaagaagacaactatacatgggccttaactagattgaagactcttttagatgacaaatgtgctccaagtgtgatggttacagatcgagaattggcactgatgaattctataagtaatgtattcccgaatacacgacatgtattatgtcgttggcacatcaacaagcaagtgttaactcattgcaagaaattattcgcaacaaaagaaggatgggatacatttaagggctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AFT FAR1 MULE

Protein Analysis

335

Amino Acids

39.01

Weight (kDa)

9.78

Isoelectric Point (pI)

39.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000143)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G76710 AT1G76710 AT1G76710 AT1G76710
fragaria_vesca FvH4_1g20063 FvH4_2g15231 FvH4_3g04011 FvH4_3g28681 FvH4_4g01411 FvH4_4g10181 FvH4_4g15922 FvH4_4g16651 FvH4_4g16652 FvH4_5g13892 FvH4_5g13893 FvH4_5g20623 FvH4_5g20623 FvH4_5g20623 FvH4_5g20623 FvH4_5g25511 FvH4_6g12551 FvH4_6g12552 FvH4_6g38841 FvH4_7g04391
malus_domestica MD05G1031300.v1.1 MD05G1031400.v1.1 MD05G1031500.v1.1 MD08G1164400.v1.1 MD10G1032900.v1.1 MD10G1033000.v1.1 MD10G1033100.v1.1
prunus_persica Prupe.3G240700_v2.0.a1 Prupe.7G144600_v2.0.a1 Prupe.8G038500_v2.0.a1 Prupe.8G038500_v2.0.a1
pyrus_communis pycom05g02250 pycom05g02260 pycom05g02270 pycom05g02280 pycom08g14160 pycom10g02100 pycom10g02110 pycom10g02130
rosa_chinensis RchiOBHm_Chr1g0329481 RchiOBHm_Chr1g0329491 RchiOBHm_Chr1g0341531 RchiOBHm_Chr3g0464811 RchiOBHm_Chr3g0494701 RchiOBHm_Chr3g0497501 RchiOBHm_Chr4g0385841 RchiOBHm_Chr5g0061181 RchiOBHm_Chr6g0263001 RchiOBHm_Chr7g0193111 RchiOBHm_Chr7g0206281 RchiOBHm_Chr7g0206311
rosa_laevigata RLG00000018908 RLG00000028528 RLG00000028803 RLG00000029882 RLG00000029883 RLG00000030361
rosa_multiflora Rmu_co8196328.1_g000001 Rmu_co8259135.1_g000001 Rmu_co8269185.1_g000001 Rmu_sc0000076.1_g000019 Rmu_sc0000311.1_g000007 Rmu_sc0000429.1_g000038 Rmu_sc0000429.1_g000039 Rmu_sc0000429.1_g000040 Rmu_sc0000511.1_g000005 Rmu_sc0000539.1_g000054 Rmu_sc0000566.1_g000039 Rmu_sc0000805.1_g000032 Rmu_sc0000870.1_g000073 Rmu_sc0000870.1_g000074 Rmu_sc0001010.1_g000018 Rmu_sc0001083.1_g000013 Rmu_sc0001114.1_g000011 Rmu_sc0001702.1_g000027 Rmu_sc0001779.1_g000012 Rmu_sc0002923.1_g000036 Rmu_sc0003242.1_g000011 Rmu_sc0003291.1_g000036 Rmu_sc0003393.1_g000012 Rmu_sc0003872.1_g000016 Rmu_sc0003872.1_g000017 Rmu_sc0003872.1_g000018 Rmu_sc0004084.1_g000020 Rmu_sc0004386.1_g000005 Rmu_sc0004622.1_g000005 Rmu_sc0004742.1_g000021 Rmu_sc0004755.1_g000020 Rmu_sc0004805.1_g000036 Rmu_sc0005065.1_g000006 Rmu_sc0005177.1_g000004 Rmu_sc0006373.1_g000003 Rmu_sc0006373.1_g000004 Rmu_sc0007121.1_g000002 Rmu_sc0007943.1_g000003 Rmu_sc0010368.1_g000006 Rmu_sc0010543.1_g000001 Rmu_sc0012591.1_g000006 Rmu_sc0013504.1_g000009 Rmu_sc0015025.1_g000001 Rmu_sc0016170.1_g000001 Rmu_sc0017156.1_g000001 Rmu_sc0026439.1_g000001
rosa_roxburghii Rroxscaffold_175G00432280 Rroxscaffold_1G00030190 Rroxscaffold_1G00030880 Rroxscaffold_2G00090520 Rroxscaffold_3G00227940 Rroxscaffold_3G00233400 Rroxscaffold_3G00238500 Rroxscaffold_3G00251650 Rroxscaffold_4G00301570 Rroxscaffold_4G00321040 Rroxscaffold_5G00350880 Rroxscaffold_7G00184400
rosa_rugosa Rorug01G0080800 Rorug01G0080900 Rorug01G0193900 Rorug02G0275900 Rorug02G0275900 Rorug02G0275900 Rorug02G0305400 Rorug02G0311800 Rorug02G0350400 Rorug02G0381300 Rorug03G0136700 Rorug03G0181900 Rorug03G0268000 Rorug04G0301600 Rorug05G0175100 Rorug05G0250700 Rorug05G0298200 Rorug05G0596000 Rorug06G0029500 Rorug07G0094300 Rorug07G0094300 Rorug07G0095400 Rorug07G0140100
rosa_samantha Rh1AG099200 Rh1AG190500 Rh1BG078900 Rh1BG079000 Rh1BG079100 Rh1CG084600 Rh1CG084700 Rh1CG095300 Rh1CG175900 Rh1DG103300 Rh1DG150400 Rh2AG079300 Rh2AG272400 Rh2AG464800 Rh2AG507400 Rh2DG078300 Rh2DG078400 Rh3CG206900 Rh3CG295400 Rh3DG206800 Rh3DG356200 Rh4CG071500 Rh4CG179200 Rh4DG064700 Rh5CG362400 Rh7AG212300 Rh7AG226200 Rh7BG222200
rosa_wichuraiana Rw0G009990 Rw0G011260 Rw0G011270 Rw0G012910 Rw0G013740 Rw1G007740 Rw1G013050 Rw1G014230 Rw2G014270 Rw3G012720 Rw3G028110 Rw4G006630 Rw4G015270 Rw4G016160 Rw4G031380 Rw5G011440 Rw5G029180 Rw5G048360 Rw5G048430 Rw5G048780 Rw6G005250 Rw6G006390 Rw7G002840 Rw7G014080 Rw7G019650 Rw7G032790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 341
AclI AACGTT 1 cut(s) 750
AclWI GGATC 1 cut(s) 731
AcsI RAATTY 2 cut(s) 373, 880
AfaI GTAC 3 cut(s) 220, 646, 660
AfiI CCNNNNNNNGG 1 cut(s) 492
AflIII ACRYGT 2 cut(s) 655, 913
AgsI TTSAA 5 cut(s) 151, 266, 324, 748, 814
AjiI CACGTC 1 cut(s) 729
Alw21I GWGCWC 2 cut(s) 561, 841
Alw26I GTCTC 1 cut(s) 267
AlwI GGATC 1 cut(s) 731
AlwNI CAGNNNCTG 1 cut(s) 538
AoxI GGCC 2 cut(s) 410, 798
ApeKI GCWGC 2 cut(s) 317, 532
ApoI RAATTY 2 cut(s) 373, 880
Asp700I GAANNNNTTC 1 cut(s) 968
AspS9I GGNCC 1 cut(s) 798
AsuHPI GGTGA 2 cut(s) 602, 611
BaeGI GKGCMC 1 cut(s) 342
BbsI GAAGAC 3 cut(s) 476, 789, 821
Bbv12I GWGCWC 2 cut(s) 561, 841
BbvI GCAGC 2 cut(s) 304, 544
BccI CCATC 5 cut(s) 379, 440, 581, 844, 981
BceAI ACGGC 1 cut(s) 509
BciVI GTATCC 1 cut(s) 985
BcoDI GTCTC 1 cut(s) 267
BfaI CTAG 1 cut(s) 807
BfuAI ACCTGC 1 cut(s) 341
BfuI GTATCC 1 cut(s) 985
BisI GCNGC 2 cut(s) 318, 533
BlsI GCNGC 2 cut(s) 319, 534
BmgBI CACGTC 1 cut(s) 729
BmgT120I GGNCC 1 cut(s) 798
BmsI GCATC 3 cut(s) 224, 264, 583
BpiI GAAGAC 3 cut(s) 476, 789, 821
BpmI CTGGAG 1 cut(s) 731
BsaAI YACGTR 1 cut(s) 644
BsaBI GATNNNNATC 1 cut(s) 47
BsaJI CCNNGG 1 cut(s) 206
Bsc4I CCNNNNNNNGG 1 cut(s) 492
Bse1I ACTGG 1 cut(s) 220
Bse3DI GCAATG 2 cut(s) 471, 955
Bse8I GATNNNNATC 1 cut(s) 47
BseDI CCNNGG 1 cut(s) 206
BseGI GGATG 2 cut(s) 239, 992
BseJI GATNNNNATC 1 cut(s) 47
BseLI CCNNNNNNNGG 1 cut(s) 492
BseMI GCAATG 2 cut(s) 471, 955
BseMII CTCAG 1 cut(s) 17
BseNI ACTGG 1 cut(s) 220
BseSI GKGCMC 1 cut(s) 342
BseXI GCAGC 2 cut(s) 304, 544
BseYI CCCAGC 1 cut(s) 515
BsgI GTGCAG 1 cut(s) 658
BshFI GGCC 2 cut(s) 412, 800
BsiHKAI GWGCWC 2 cut(s) 561, 841
BslI CCNNNNNNNGG 1 cut(s) 492
BsmAI GTCTC 1 cut(s) 267
BsmBI CGTCTC 1 cut(s) 267
BsnI GGCC 2 cut(s) 412, 800
Bsp1286I GDGCHC 3 cut(s) 342, 561, 841
Bsp143I GATC 2 cut(s) 723, 859
BspANI GGCC 2 cut(s) 412, 800
BspCNI CTCAG 1 cut(s) 18
BspMI ACCTGC 1 cut(s) 341
BspPI GGATC 1 cut(s) 731
BsrDI GCAATG 2 cut(s) 471, 955
BsrI ACTGG 1 cut(s) 220
BssECI CCNNGG 1 cut(s) 206
BssMI GATC 2 cut(s) 723, 859
Bst6I CTCTTC 1 cut(s) 711
BstAPI GCANNNNNTGC 1 cut(s) 538
BstBAI YACGTR 1 cut(s) 644
BstDEI CTNAG 2 cut(s) 26, 542
BstF5I GGATG 2 cut(s) 239, 992
BstKTI GATC 2 cut(s) 726, 862
BstMAI GTCTC 1 cut(s) 267
BstMBI GATC 2 cut(s) 723, 859
BstMWI GCNNNNNNNGC 2 cut(s) 208, 538
BstNSI RCATGY 2 cut(s) 659, 917
BstSLI GKGCMC 1 cut(s) 342
BstSNI TACGTA 1 cut(s) 644
BstV1I GCAGC 2 cut(s) 304, 544
BstV2I GAAGAC 3 cut(s) 476, 789, 821
BsuI GTATCC 1 cut(s) 985
BsuRI GGCC 2 cut(s) 412, 800
BtrI CACGTC 1 cut(s) 729
BtsCI GGATG 2 cut(s) 239, 992
BtsIMutI CAGTG 1 cut(s) 872
BveI ACCTGC 1 cut(s) 341
CaiI CAGNNNCTG 1 cut(s) 538
Cfr13I GGNCC 1 cut(s) 798
CseI GACGC 1 cut(s) 191
Csp6I GTAC 3 cut(s) 219, 645, 659
CviAII CATG 6 cut(s) 314, 335, 656, 667, 795, 914
CviJI RGCY 6 cut(s) 211, 412, 431, 515, 800, 1005
CviKI_1 RGCY 6 cut(s) 211, 412, 431, 515, 800, 1005
CviQI GTAC 3 cut(s) 219, 645, 659
DdeI CTNAG 2 cut(s) 26, 542
DpnI GATC 2 cut(s) 725, 861
DpnII GATC 2 cut(s) 723, 859
Eam1104I CTCTTC 1 cut(s) 711
EarI CTCTTC 1 cut(s) 711
Eco105I TACGTA 1 cut(s) 644
Eco147I AGGCCT 1 cut(s) 412
Eco32I GATATC 1 cut(s) 695
EcoRI GAATTC 1 cut(s) 880
EcoRV GATATC 1 cut(s) 695
Esp3I CGTCTC 1 cut(s) 267
FaeI CATG 6 cut(s) 317, 338, 659, 670, 798, 917
FatI CATG 6 cut(s) 313, 334, 655, 666, 794, 913
Fnu4HI GCNGC 2 cut(s) 318, 533
FokI GGATG 2 cut(s) 246, 999
Fsp4HI GCNGC 2 cut(s) 318, 533
FspBI CTAG 1 cut(s) 807
GluI GCNGC 2 cut(s) 318, 533
GsaI CCCAGC 1 cut(s) 519
GsuI CTGGAG 1 cut(s) 731
HaeIII GGCC 2 cut(s) 412, 800
HgaI GACGC 1 cut(s) 191
Hin1II CATG 6 cut(s) 317, 338, 659, 670, 798, 917
HincII GTYRAC 1 cut(s) 951
HindII GTYRAC 1 cut(s) 951
HinfI GANTC 3 cut(s) 62, 173, 817
HpaI GTTAAC 1 cut(s) 951
HphI GGTGA 2 cut(s) 602, 611
Hpy166II GTNNAC 3 cut(s) 396, 732, 951
Hpy188I TCNGA 8 cut(s) 27, 53, 61, 157, 178, 207, 364, 450
Hpy188III TCNNGA 5 cut(s) 66, 436, 710, 863, 901
Hpy8I GTNNAC 3 cut(s) 396, 732, 951
HpyAV CCTTC 4 cut(s) 48, 341, 754, 977
HpyCH4IV ACGT 3 cut(s) 643, 728, 750
HpyCH4V TGCA 5 cut(s) 307, 532, 675, 755, 960
HpyF10VI GCNNNNNNNGC 2 cut(s) 208, 538
HpyF3I CTNAG 2 cut(s) 26, 542
HpySE526I ACGT 3 cut(s) 643, 728, 750
Hsp92II CATG 6 cut(s) 317, 338, 659, 670, 798, 917
KspAI GTTAAC 1 cut(s) 951
Kzo9I GATC 2 cut(s) 723, 859
LmnI GCTCC 1 cut(s) 844
LpnPI CCDG 6 cut(s) 51, 201, 336, 499, 501, 695
Lsp1109I GCAGC 2 cut(s) 304, 544
LweI GCATC 3 cut(s) 224, 264, 583
MaeI CTAG 1 cut(s) 807
MaeII ACGT 3 cut(s) 643, 728, 750
MaeIII GTNAC 5 cut(s) 457, 545, 598, 617, 853
MalI GATC 2 cut(s) 725, 861
MboI GATC 2 cut(s) 723, 859
MboII GAAGA 9 cut(s) 97, 100, 194, 453, 463, 481, 698, 794, 826
MhlI GDGCHC 3 cut(s) 342, 561, 841
MluCI AATT 7 cut(s) 34, 72, 373, 507, 866, 880, 965
MlyI GAGTC 1 cut(s) 811
MnlI CCTC 6 cut(s) 111, 201, 245, 283, 402, 714
MroXI GAANNNNTTC 1 cut(s) 968
MseI TTAA 5 cut(s) 248, 404, 803, 950, 999
MslI CAYNNNNRTG 2 cut(s) 312, 582
MwoI GCNNNNNNNGC 2 cut(s) 208, 538
NdeII GATC 2 cut(s) 723, 859
NlaIII CATG 6 cut(s) 317, 338, 659, 670, 798, 917
NmuCI GTSAC 2 cut(s) 457, 617
NspI RCATGY 2 cut(s) 659, 917
PceI AGGCCT 1 cut(s) 412
PciI ACATGT 2 cut(s) 655, 913
PdmI GAANNNNTTC 1 cut(s) 968
PfeI GAWTC 2 cut(s) 62, 173
PkrI GCNGC 2 cut(s) 319, 534
PleI GAGTC 1 cut(s) 811
PpsI GAGTC 1 cut(s) 811
Ppu21I YACGTR 1 cut(s) 644
PscI ACATGT 2 cut(s) 655, 913
Psp1406I AACGTT 1 cut(s) 750
PspFI CCCAGC 1 cut(s) 515
PspPI GGNCC 1 cut(s) 798
PstNI CAGNNNCTG 1 cut(s) 538
RsaI GTAC 3 cut(s) 220, 646, 660
RsaNI GTAC 3 cut(s) 219, 645, 659
RseI CAYNNNNRTG 2 cut(s) 312, 582
SaqAI TTAA 5 cut(s) 248, 404, 803, 950, 999
SatI GCNGC 2 cut(s) 318, 533
Sau3AI GATC 2 cut(s) 723, 859
Sau96I GGNCC 1 cut(s) 798
SchI GAGTC 1 cut(s) 811
SduI GDGCHC 3 cut(s) 342, 561, 841
SetI ASST 9 cut(s) 59, 97, 294, 333, 355, 646, 731, 746, 753
SfaNI GCATC 3 cut(s) 224, 264, 583
SmiMI CAYNNNNRTG 2 cut(s) 312, 582
SnaBI TACGTA 1 cut(s) 644
Sse9I AATT 7 cut(s) 34, 72, 373, 507, 866, 880, 965
SseBI AGGCCT 1 cut(s) 412
SspI AATATT 1 cut(s) 262
SspMI CTAG 1 cut(s) 807
StuI AGGCCT 1 cut(s) 412
TaiI ACGT 3 cut(s) 646, 731, 753
TaqI TCGA 3 cut(s) 190, 355, 862
TasI AATT 7 cut(s) 34, 72, 373, 507, 866, 880, 965
TatI WGTACW 1 cut(s) 658
TfiI GAWTC 2 cut(s) 62, 173
Tru1I TTAA 5 cut(s) 248, 404, 803, 950, 999
Tru9I TTAA 5 cut(s) 248, 404, 803, 950, 999
TscAI CASTG 1 cut(s) 879
TseFI GTSAC 2 cut(s) 457, 617
TseI GCWGC 2 cut(s) 317, 532
Tsp45I GTSAC 2 cut(s) 457, 617
TspDTI ATGAA 6 cut(s) 195, 234, 323, 366, 482, 893
TspGWI ACGGA 1 cut(s) 617
TspRI CASTG 1 cut(s) 879
XapI RAATTY 2 cut(s) 373, 880
XceI RCATGY 2 cut(s) 659, 917
XmnI GAANNNNTTC 1 cut(s) 968
XspI CTAG 1 cut(s) 807
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.