Rh5CG362400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0000143
Physical Location & Seq
Forward (+)
43412246 .. 43444047
31802 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG362400.1

Sequence Viewer

Length: 675 bp
ATGGAAATCCAAAGACTTACTCCAAGTCAAAACCACCAACATTGCAGAAGCTTCAGCATGGATAAGTTTCCATCAGATCTTATGGACACAAGACTAGGAGGCCAAAAGGTCGAGTCAAATTCTAATTGGCAACGACAACATGCACCAAGCCATGCATATTCTAATTGTATAGGAACACAACCATGCATCAAACCAGTTCCACATGCTGAAGGCCAACAACAGAATGTCTCGACCATATATAGCAATATTACAGAAGAATGTTCACGTGATTATACCAATGAATTCACGACGTACCAGGTTGGTAATGTTCCAGTATCTGTTACTAAAATTCCATTGATCTCCATTGATTACGAACCACCAAGATATGTTTATTGCCTGGGCACCCATTGCCACCGGTTACACCAAATTGGATTTACCATGGAAATGATAAAGCTAAAAGTGAAAGCATCAGATGTTTATATAACAAAAGAAGAAAATGACAAAGTCGAAACCTATCCAGAGAACCCAAAGAGCCCCAAAGTGATTGAGTTAAGGTTTGTCTCTCTCGATTCCCAACTCTATTACGTTGAAATTCCAACTAGCCCGATCATTTCCAGGGCTTGCAGAGAGGTAGAGGAATTGGGCTTGGATTCTGAGGAGCTACCTATATTAGCTAATCCAATGCATTTCATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

224

Amino Acids

25.71

Weight (kDa)

5.71

Isoelectric Point (pI)

48.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000143)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G76710 AT1G76710 AT1G76710 AT1G76710
fragaria_vesca FvH4_1g20063 FvH4_2g15231 FvH4_3g04011 FvH4_3g28681 FvH4_4g01411 FvH4_4g10181 FvH4_4g15922 FvH4_4g16651 FvH4_4g16652 FvH4_5g13892 FvH4_5g13893 FvH4_5g20623 FvH4_5g20623 FvH4_5g20623 FvH4_5g20623 FvH4_5g25511 FvH4_6g12551 FvH4_6g12552 FvH4_6g38841 FvH4_7g04391
malus_domestica MD05G1031300.v1.1 MD05G1031400.v1.1 MD05G1031500.v1.1 MD08G1164400.v1.1 MD10G1032900.v1.1 MD10G1033000.v1.1 MD10G1033100.v1.1
prunus_persica Prupe.3G240700_v2.0.a1 Prupe.7G144600_v2.0.a1 Prupe.8G038500_v2.0.a1 Prupe.8G038500_v2.0.a1
pyrus_communis pycom05g02250 pycom05g02260 pycom05g02270 pycom05g02280 pycom08g14160 pycom10g02100 pycom10g02110 pycom10g02130
rosa_chinensis RchiOBHm_Chr1g0329481 RchiOBHm_Chr1g0329491 RchiOBHm_Chr1g0341531 RchiOBHm_Chr3g0464811 RchiOBHm_Chr3g0494701 RchiOBHm_Chr3g0497501 RchiOBHm_Chr4g0385841 RchiOBHm_Chr5g0061181 RchiOBHm_Chr6g0263001 RchiOBHm_Chr7g0193111 RchiOBHm_Chr7g0206281 RchiOBHm_Chr7g0206311
rosa_laevigata RLG00000018908 RLG00000028528 RLG00000028803 RLG00000029882 RLG00000029883 RLG00000030361
rosa_multiflora Rmu_co8196328.1_g000001 Rmu_co8259135.1_g000001 Rmu_co8269185.1_g000001 Rmu_sc0000076.1_g000019 Rmu_sc0000311.1_g000007 Rmu_sc0000429.1_g000038 Rmu_sc0000429.1_g000039 Rmu_sc0000429.1_g000040 Rmu_sc0000511.1_g000005 Rmu_sc0000539.1_g000054 Rmu_sc0000566.1_g000039 Rmu_sc0000805.1_g000032 Rmu_sc0000870.1_g000073 Rmu_sc0000870.1_g000074 Rmu_sc0001010.1_g000018 Rmu_sc0001083.1_g000013 Rmu_sc0001114.1_g000011 Rmu_sc0001702.1_g000027 Rmu_sc0001779.1_g000012 Rmu_sc0002923.1_g000036 Rmu_sc0003242.1_g000011 Rmu_sc0003291.1_g000036 Rmu_sc0003393.1_g000012 Rmu_sc0003872.1_g000016 Rmu_sc0003872.1_g000017 Rmu_sc0003872.1_g000018 Rmu_sc0004084.1_g000020 Rmu_sc0004386.1_g000005 Rmu_sc0004622.1_g000005 Rmu_sc0004742.1_g000021 Rmu_sc0004755.1_g000020 Rmu_sc0004805.1_g000036 Rmu_sc0005065.1_g000006 Rmu_sc0005177.1_g000004 Rmu_sc0006373.1_g000003 Rmu_sc0006373.1_g000004 Rmu_sc0007121.1_g000002 Rmu_sc0007943.1_g000003 Rmu_sc0010368.1_g000006 Rmu_sc0010543.1_g000001 Rmu_sc0012591.1_g000006 Rmu_sc0013504.1_g000009 Rmu_sc0015025.1_g000001 Rmu_sc0016170.1_g000001 Rmu_sc0017156.1_g000001 Rmu_sc0026439.1_g000001
rosa_roxburghii Rroxscaffold_175G00432280 Rroxscaffold_1G00030190 Rroxscaffold_1G00030880 Rroxscaffold_2G00090520 Rroxscaffold_3G00227940 Rroxscaffold_3G00233400 Rroxscaffold_3G00238500 Rroxscaffold_3G00251650 Rroxscaffold_4G00301570 Rroxscaffold_4G00321040 Rroxscaffold_5G00350880 Rroxscaffold_7G00184400
rosa_rugosa Rorug01G0080800 Rorug01G0080900 Rorug01G0193900 Rorug02G0275900 Rorug02G0275900 Rorug02G0275900 Rorug02G0305400 Rorug02G0311800 Rorug02G0350400 Rorug02G0381300 Rorug03G0136700 Rorug03G0181900 Rorug03G0268000 Rorug04G0301600 Rorug05G0175100 Rorug05G0250700 Rorug05G0298200 Rorug05G0596000 Rorug06G0029500 Rorug07G0094300 Rorug07G0094300 Rorug07G0095400 Rorug07G0140100
rosa_samantha Rh1AG099200 Rh1AG190500 Rh1BG078900 Rh1BG079000 Rh1BG079100 Rh1CG084600 Rh1CG084700 Rh1CG095300 Rh1CG175900 Rh1DG103300 Rh1DG150400 Rh2AG079300 Rh2AG272400 Rh2AG464800 Rh2AG507400 Rh2DG078300 Rh2DG078400 Rh3CG206900 Rh3CG295400 Rh3DG206800 Rh3DG356200 Rh4CG071500 Rh4CG179200 Rh4DG064700 Rh5CG362400 Rh7AG212300 Rh7AG226200 Rh7BG222200
rosa_wichuraiana Rw0G009990 Rw0G011260 Rw0G011270 Rw0G012910 Rw0G013740 Rw1G007740 Rw1G013050 Rw1G014230 Rw2G014270 Rw3G012720 Rw3G028110 Rw4G006630 Rw4G015270 Rw4G016160 Rw4G031380 Rw5G011440 Rw5G029180 Rw5G048360 Rw5G048430 Rw5G048780 Rw6G005250 Rw6G006390 Rw7G002840 Rw7G014080 Rw7G019650 Rw7G032790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 380
AcsI RAATTY 4 cut(s) 118, 281, 327, 570
AcuI CTGAAG 2 cut(s) 37, 228
AcvI CACGTG 1 cut(s) 266
AfaI GTAC 1 cut(s) 293
AgeI ACCGGT 1 cut(s) 393
AgsI TTSAA 1 cut(s) 569
AjnI CCWGG 3 cut(s) 294, 375, 593
AluBI AGCT 4 cut(s) 51, 433, 640, 653
AluI AGCT 4 cut(s) 51, 433, 640, 653
Alw26I GTCTC 2 cut(s) 232, 544
AlwNI CAGNNNCTG 1 cut(s) 317
AoxI GGCC 2 cut(s) 100, 211
ApoI RAATTY 4 cut(s) 118, 281, 327, 570
AsiGI ACCGGT 1 cut(s) 393
BaeGI GKGCMC 1 cut(s) 383
BanI GGYRCC 1 cut(s) 380
BanII GRGCYC 1 cut(s) 515
BbrPI CACGTG 1 cut(s) 266
BccI CCATC 1 cut(s) 79
BciT130I CCWGG 3 cut(s) 296, 377, 595
BcoDI GTCTC 2 cut(s) 232, 544
BfaI CTAG 2 cut(s) 95, 579
BglII AGATCT 1 cut(s) 76
Bme1390I CCNGG 3 cut(s) 296, 377, 595
BmiI GGNNCC 1 cut(s) 382
BmrFI CCNGG 3 cut(s) 296, 377, 595
BmsI GCATC 2 cut(s) 195, 455
BsaAI YACGTR 1 cut(s) 266
BsaJI CCNNGG 3 cut(s) 376, 417, 594
BsaWI WCCGGW 1 cut(s) 393
Bse118I RCCGGY 1 cut(s) 393
Bse1I ACTGG 2 cut(s) 194, 311
Bse3DI GCAATG 2 cut(s) 40, 385
BseBI CCWGG 3 cut(s) 296, 377, 595
BseDI CCNNGG 3 cut(s) 376, 417, 594
BseMI GCAATG 2 cut(s) 40, 385
BseMII CTCAG 1 cut(s) 624
BseNI ACTGG 2 cut(s) 194, 311
BseRI GAGGAG 1 cut(s) 650
BseSI GKGCMC 1 cut(s) 383
BshFI GGCC 2 cut(s) 102, 213
BshNI GGYRCC 1 cut(s) 380
BshTI ACCGGT 1 cut(s) 393
BsiSI CCGG 1 cut(s) 394
BsmAI GTCTC 2 cut(s) 232, 544
BsnI GGCC 2 cut(s) 102, 213
Bsp1286I GDGCHC 2 cut(s) 383, 515
Bsp143I GATC 3 cut(s) 76, 336, 585
Bsp19I CCATGG 1 cut(s) 417
BspANI GGCC 2 cut(s) 102, 213
BspCNI CTCAG 1 cut(s) 625
BspLI GGNNCC 1 cut(s) 382
BspT107I GGYRCC 1 cut(s) 380
BsrDI GCAATG 2 cut(s) 40, 385
BsrFI RCCGGY 1 cut(s) 393
BsrI ACTGG 2 cut(s) 194, 311
BssAI RCCGGY 1 cut(s) 393
BssECI CCNNGG 3 cut(s) 376, 417, 594
BssMI GATC 3 cut(s) 76, 336, 585
BssT1I CCWWGG 1 cut(s) 417
Bst2UI CCWGG 3 cut(s) 296, 377, 595
BstAPI GCANNNNNTGC 1 cut(s) 387
BstBAI YACGTR 1 cut(s) 266
BstC8I GCNNGC 1 cut(s) 601
BstDEI CTNAG 1 cut(s) 633
BstDSI CCRYGG 1 cut(s) 417
BstKTI GATC 3 cut(s) 79, 339, 588
BstMAI GTCTC 2 cut(s) 232, 544
BstMBI GATC 3 cut(s) 76, 336, 585
BstMWI GCNNNNNNNGC 1 cut(s) 387
BstNI CCWGG 3 cut(s) 296, 377, 595
BstNSI RCATGY 2 cut(s) 143, 206
BstSCI CCNGG 3 cut(s) 294, 375, 593
BstSLI GKGCMC 1 cut(s) 383
BstX2I RGATCY 1 cut(s) 76
BstYI RGATCY 1 cut(s) 76
BsuRI GGCC 2 cut(s) 102, 213
BtgI CCRYGG 1 cut(s) 417
Cac8I GCNNGC 1 cut(s) 601
CaiI CAGNNNCTG 1 cut(s) 317
Cfr10I RCCGGY 1 cut(s) 393
CsiI ACCWGGT 1 cut(s) 294
Csp6I GTAC 1 cut(s) 292
CspAI ACCGGT 1 cut(s) 393
CspCI CAANNNNNGTGG 2 cut(s) 23, 58
CviAII CATG 7 cut(s) 58, 140, 152, 183, 203, 418, 670
CviQI GTAC 1 cut(s) 292
DdeI CTNAG 1 cut(s) 633
DpnI GATC 3 cut(s) 78, 338, 587
DpnII GATC 3 cut(s) 76, 336, 585
Eco130I CCWWGG 1 cut(s) 417
Eco24I GRGCYC 1 cut(s) 515
Eco57I CTGAAG 2 cut(s) 37, 228
Eco72I CACGTG 1 cut(s) 266
EcoRI GAATTC 1 cut(s) 281
EcoRII CCWGG 3 cut(s) 294, 375, 593
EcoT14I CCWWGG 1 cut(s) 417
EcoT22I ATGCAT 3 cut(s) 157, 188, 666
EcoT38I GRGCYC 1 cut(s) 515
ErhI CCWWGG 1 cut(s) 417
FaeI CATG 7 cut(s) 61, 143, 155, 186, 206, 421, 673
FatI CATG 7 cut(s) 57, 139, 151, 182, 202, 417, 669
FriOI GRGCYC 1 cut(s) 515
FspBI CTAG 2 cut(s) 95, 579
HaeIII GGCC 2 cut(s) 102, 213
HapII CCGG 1 cut(s) 394
Hin1II CATG 7 cut(s) 61, 143, 155, 186, 206, 421, 673
HindIII AAGCTT 1 cut(s) 49
HinfI GANTC 3 cut(s) 113, 548, 629
HpaII CCGG 1 cut(s) 394
Hpy166II GTNNAC 1 cut(s) 263
Hpy188I TCNGA 3 cut(s) 76, 451, 634
Hpy188III TCNNGA 4 cut(s) 229, 286, 497, 545
Hpy8I GTNNAC 1 cut(s) 263
Hpy99I CGWCG 1 cut(s) 292
HpyAV CCTTC 1 cut(s) 203
HpyCH4IV ACGT 3 cut(s) 265, 290, 564
HpyCH4V TGCA 6 cut(s) 45, 143, 155, 186, 603, 664
HpyF10VI GCNNNNNNNGC 1 cut(s) 387
HpyF3I CTNAG 1 cut(s) 633
HpySE526I ACGT 3 cut(s) 265, 290, 564
Hsp92II CATG 7 cut(s) 61, 143, 155, 186, 206, 421, 673
Kzo9I GATC 3 cut(s) 76, 336, 585
LmnI GCTCC 1 cut(s) 637
LweI GCATC 2 cut(s) 195, 455
MabI ACCWGGT 1 cut(s) 294
MaeI CTAG 2 cut(s) 95, 579
MaeII ACGT 3 cut(s) 265, 290, 564
MaeIII GTNAC 2 cut(s) 319, 396
MalI GATC 3 cut(s) 78, 338, 587
MboI GATC 3 cut(s) 76, 336, 585
MboII GAAGA 2 cut(s) 266, 482
MflI RGATCY 1 cut(s) 76
MhlI GDGCHC 2 cut(s) 383, 515
MluCI AATT 8 cut(s) 118, 124, 163, 281, 327, 405, 570, 617
MlyI GAGTC 1 cut(s) 122
MmeI TCCRAC 1 cut(s) 599
MnlI CCTC 4 cut(s) 92, 601, 607, 628
Mph1103I ATGCAT 3 cut(s) 157, 188, 666
MseI TTAA 1 cut(s) 530
MslI CAYNNNNRTG 2 cut(s) 181, 422
MspI CCGG 1 cut(s) 394
MspR9I CCNGG 3 cut(s) 296, 377, 595
MvaI CCWGG 3 cut(s) 296, 377, 595
MwoI GCNNNNNNNGC 1 cut(s) 387
NcoI CCATGG 1 cut(s) 417
NdeII GATC 3 cut(s) 76, 336, 585
NlaIII CATG 7 cut(s) 61, 143, 155, 186, 206, 421, 673
NlaIV GGNNCC 1 cut(s) 382
NsiI ATGCAT 3 cut(s) 157, 188, 666
NspI RCATGY 2 cut(s) 143, 206
PfeI GAWTC 2 cut(s) 548, 629
PflFI GACNNNGTC 1 cut(s) 482
PinAI ACCGGT 1 cut(s) 393
PleI GAGTC 1 cut(s) 121
PmaCI CACGTG 1 cut(s) 266
PmlI CACGTG 1 cut(s) 266
PpsI GAGTC 1 cut(s) 121
Ppu21I YACGTR 1 cut(s) 266
Psp6I CCWGG 3 cut(s) 294, 375, 593
PspCI CACGTG 1 cut(s) 266
PspGI CCWGG 3 cut(s) 294, 375, 593
PspN4I GGNNCC 1 cut(s) 382
PstNI CAGNNNCTG 1 cut(s) 317
PsuI RGATCY 1 cut(s) 76
PsyI GACNNNGTC 1 cut(s) 482
RsaI GTAC 1 cut(s) 293
RsaNI GTAC 1 cut(s) 292
RseI CAYNNNNRTG 2 cut(s) 181, 422
SaqAI TTAA 1 cut(s) 530
Sau3AI GATC 3 cut(s) 76, 336, 585
SchI GAGTC 1 cut(s) 122
ScrFI CCNGG 3 cut(s) 296, 377, 595
SduI GDGCHC 2 cut(s) 383, 515
SexAI ACCWGGT 1 cut(s) 294
SfaNI GCATC 2 cut(s) 195, 455
SmiMI CAYNNNNRTG 2 cut(s) 181, 422
Sse9I AATT 8 cut(s) 118, 124, 163, 281, 327, 405, 570, 617
SspI AATATT 1 cut(s) 247
SspMI CTAG 2 cut(s) 95, 579
StyD4I CCNGG 3 cut(s) 294, 375, 593
StyI CCWWGG 1 cut(s) 417
TaiI ACGT 3 cut(s) 268, 293, 567
TaqI TCGA 4 cut(s) 111, 230, 486, 546
TasI AATT 8 cut(s) 118, 124, 163, 281, 327, 405, 570, 617
TfiI GAWTC 2 cut(s) 548, 629
Tru1I TTAA 1 cut(s) 530
Tru9I TTAA 1 cut(s) 530
TspDTI ATGAA 2 cut(s) 294, 658
Tth111I GACNNNGTC 1 cut(s) 482
XapI RAATTY 4 cut(s) 118, 281, 327, 570
XceI RCATGY 2 cut(s) 143, 206
XspI CTAG 2 cut(s) 95, 579
Zsp2I ATGCAT 3 cut(s) 157, 188, 666
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.