Rmu_sc0003872.1_g000018

protein FAR1-RELATED SEQUENCE

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003872.1
Physical Location & Seq
Forward (+)
54575 .. 55398
824 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003872.1_g000018.1.cds

Sequence Viewer

Length: 741 bp
atgaatccaggtagtacgttccttaaagaacctgcagaaagagtgaagacaaaaggtcgtccacgcaaaattgacactagtacttgtcgtttgccatccgcatgggagattgataatgttctttctagtcaggacaataactcactttcacctgcagtttatgaagttggtcaagatgttccccatggtcctattcttcctgttcatcatactacagaaaataaaaaaccaaaagatgttcctaataaaattcagagcccaaaagattctacatttgcacttacaaccaaatataattgccaattccgagttggaattcagccatacattattggcgcatatgatgttgaatctgatggcaattgtggttatagagctgtggcttcggcaatggtatttggtcgaaaatcttggcgtcgagttcgtagggatttattgaatgagttagagagcatgccacaattgtatgaaagtttctttggtactaaagaggttaagaaggttaaggatgcacttaaccattatagctctgggagcgcacctaaaagatgttggatgtatttcccagaaatggggcatttgattgcaacttgttatggtgtggtggtgatcgatttatcagatgggcaatgcataacatttcttcctcttgtggaacaccatagtggacatttcagtagcaatgagcttcaagagattggaattggtcatgtgaatagcacaggcagacaaaagtcataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

246

Amino Acids

27.53

Weight (kDa)

8.66

Isoelectric Point (pI)

47.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000143)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G76710 AT1G76710 AT1G76710 AT1G76710
fragaria_vesca FvH4_1g20063 FvH4_2g15231 FvH4_3g04011 FvH4_3g28681 FvH4_4g01411 FvH4_4g10181 FvH4_4g15922 FvH4_4g16651 FvH4_4g16652 FvH4_5g13892 FvH4_5g13893 FvH4_5g20623 FvH4_5g20623 FvH4_5g20623 FvH4_5g20623 FvH4_5g25511 FvH4_6g12551 FvH4_6g12552 FvH4_6g38841 FvH4_7g04391
malus_domestica MD05G1031300.v1.1 MD05G1031400.v1.1 MD05G1031500.v1.1 MD08G1164400.v1.1 MD10G1032900.v1.1 MD10G1033000.v1.1 MD10G1033100.v1.1
prunus_persica Prupe.3G240700_v2.0.a1 Prupe.7G144600_v2.0.a1 Prupe.8G038500_v2.0.a1 Prupe.8G038500_v2.0.a1
pyrus_communis pycom05g02250 pycom05g02260 pycom05g02270 pycom05g02280 pycom08g14160 pycom10g02100 pycom10g02110 pycom10g02130
rosa_chinensis RchiOBHm_Chr1g0329481 RchiOBHm_Chr1g0329491 RchiOBHm_Chr1g0341531 RchiOBHm_Chr3g0464811 RchiOBHm_Chr3g0494701 RchiOBHm_Chr3g0497501 RchiOBHm_Chr4g0385841 RchiOBHm_Chr5g0061181 RchiOBHm_Chr6g0263001 RchiOBHm_Chr7g0193111 RchiOBHm_Chr7g0206281 RchiOBHm_Chr7g0206311
rosa_laevigata RLG00000018908 RLG00000028528 RLG00000028803 RLG00000029882 RLG00000029883 RLG00000030361
rosa_multiflora Rmu_co8196328.1_g000001 Rmu_co8259135.1_g000001 Rmu_co8269185.1_g000001 Rmu_sc0000076.1_g000019 Rmu_sc0000311.1_g000007 Rmu_sc0000429.1_g000038 Rmu_sc0000429.1_g000039 Rmu_sc0000429.1_g000040 Rmu_sc0000511.1_g000005 Rmu_sc0000539.1_g000054 Rmu_sc0000566.1_g000039 Rmu_sc0000805.1_g000032 Rmu_sc0000870.1_g000073 Rmu_sc0000870.1_g000074 Rmu_sc0001010.1_g000018 Rmu_sc0001083.1_g000013 Rmu_sc0001114.1_g000011 Rmu_sc0001702.1_g000027 Rmu_sc0001779.1_g000012 Rmu_sc0002923.1_g000036 Rmu_sc0003242.1_g000011 Rmu_sc0003291.1_g000036 Rmu_sc0003393.1_g000012 Rmu_sc0003872.1_g000016 Rmu_sc0003872.1_g000017 Rmu_sc0003872.1_g000018 Rmu_sc0004084.1_g000020 Rmu_sc0004386.1_g000005 Rmu_sc0004622.1_g000005 Rmu_sc0004742.1_g000021 Rmu_sc0004755.1_g000020 Rmu_sc0004805.1_g000036 Rmu_sc0005065.1_g000006 Rmu_sc0005177.1_g000004 Rmu_sc0006373.1_g000003 Rmu_sc0006373.1_g000004 Rmu_sc0007121.1_g000002 Rmu_sc0007943.1_g000003 Rmu_sc0010368.1_g000006 Rmu_sc0010543.1_g000001 Rmu_sc0012591.1_g000006 Rmu_sc0013504.1_g000009 Rmu_sc0015025.1_g000001 Rmu_sc0016170.1_g000001 Rmu_sc0017156.1_g000001 Rmu_sc0026439.1_g000001
rosa_roxburghii Rroxscaffold_175G00432280 Rroxscaffold_1G00030190 Rroxscaffold_1G00030880 Rroxscaffold_2G00090520 Rroxscaffold_3G00227940 Rroxscaffold_3G00233400 Rroxscaffold_3G00238500 Rroxscaffold_3G00251650 Rroxscaffold_4G00301570 Rroxscaffold_4G00321040 Rroxscaffold_5G00350880 Rroxscaffold_7G00184400
rosa_rugosa Rorug01G0080800 Rorug01G0080900 Rorug01G0193900 Rorug02G0275900 Rorug02G0275900 Rorug02G0275900 Rorug02G0305400 Rorug02G0311800 Rorug02G0350400 Rorug02G0381300 Rorug03G0136700 Rorug03G0181900 Rorug03G0268000 Rorug04G0301600 Rorug05G0175100 Rorug05G0250700 Rorug05G0298200 Rorug05G0596000 Rorug06G0029500 Rorug07G0094300 Rorug07G0094300 Rorug07G0095400 Rorug07G0140100
rosa_samantha Rh1AG099200 Rh1AG190500 Rh1BG078900 Rh1BG079000 Rh1BG079100 Rh1CG084600 Rh1CG084700 Rh1CG095300 Rh1CG175900 Rh1DG103300 Rh1DG150400 Rh2AG079300 Rh2AG272400 Rh2AG464800 Rh2AG507400 Rh2DG078300 Rh2DG078400 Rh3CG206900 Rh3CG295400 Rh3DG206800 Rh3DG356200 Rh4CG071500 Rh4CG179200 Rh4DG064700 Rh5CG362400 Rh7AG212300 Rh7AG226200 Rh7BG222200
rosa_wichuraiana Rw0G009990 Rw0G011260 Rw0G011270 Rw0G012910 Rw0G013740 Rw1G007740 Rw1G013050 Rw1G014230 Rw2G014270 Rw3G012720 Rw3G028110 Rw4G006630 Rw4G015270 Rw4G016160 Rw4G031380 Rw5G011440 Rw5G029180 Rw5G048360 Rw5G048430 Rw5G048780 Rw6G005250 Rw6G006390 Rw7G002840 Rw7G014080 Rw7G019650 Rw7G032790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 160
Acc36I ACCTGC 2 cut(s) 40, 160
AciI CCGC 1 cut(s) 99
AcsI RAATTY 2 cut(s) 249, 315
AcyI GRCGYC 1 cut(s) 415
AfaI GTAC 3 cut(s) 16, 82, 484
AfiI CCNNNNNNNGG 2 cut(s) 571, 572
AgsI TTSAA 3 cut(s) 350, 439, 692
AhdI GACNNNNNGTC 1 cut(s) 54
AhlI ACTAGT 1 cut(s) 77
AjnI CCWGG 1 cut(s) 7
AjuI GAANNNNNNNTTGG 2 cut(s) 462, 494
AleI CACNNNNGTG 1 cut(s) 663
AluBI AGCT 3 cut(s) 377, 528, 688
AluI AGCT 3 cut(s) 377, 528, 688
ApoI RAATTY 2 cut(s) 249, 315
AspLEI GCGC 2 cut(s) 338, 539
AspS9I GGNCC 1 cut(s) 188
AsuHPI GGTGA 2 cut(s) 141, 619
AvaII GGWCC 1 cut(s) 188
BanII GRGCYC 1 cut(s) 260
BbsI GAAGAC 1 cut(s) 53
BccI CCATC 3 cut(s) 103, 350, 617
BciT130I CCWGG 1 cut(s) 9
BcuI ACTAGT 1 cut(s) 77
BfaI CTAG 2 cut(s) 78, 126
BfmI CTRYAG 3 cut(s) 33, 153, 213
BfuAI ACCTGC 2 cut(s) 40, 160
BmcAI AGTACT 1 cut(s) 82
Bme1390I CCNGG 1 cut(s) 9
Bme18I GGWCC 1 cut(s) 188
BmeRI GACNNNNNGTC 1 cut(s) 54
BmgT120I GGNCC 1 cut(s) 188
BmrFI CCNGG 1 cut(s) 9
BmsI GCATC 1 cut(s) 499
BoxI GACNNNNGTC 1 cut(s) 733
BpiI GAAGAC 1 cut(s) 53
Bsa29I ATCGAT 1 cut(s) 612
BsaHI GRCGYC 1 cut(s) 415
BsaJI CCNNGG 1 cut(s) 184
Bsc4I CCNNNNNNNGG 2 cut(s) 571, 572
Bse3DI GCAATG 3 cut(s) 396, 635, 688
BseBI CCWGG 1 cut(s) 9
BseCI ATCGAT 1 cut(s) 612
BseDI CCNNGG 1 cut(s) 184
BseGI GGATG 3 cut(s) 95, 514, 561
BseLI CCNNNNNNNGG 2 cut(s) 571, 572
BseMI GCAATG 3 cut(s) 396, 635, 688
BshVI ATCGAT 1 cut(s) 612
BslI CCNNNNNNNGG 2 cut(s) 571, 572
Bsp1286I GDGCHC 1 cut(s) 260
Bsp143I GATC 1 cut(s) 609
Bsp19I CCATGG 1 cut(s) 184
BspACI CCGC 1 cut(s) 99
BspDI ATCGAT 1 cut(s) 612
BspMAI CTGCAG 2 cut(s) 37, 157
BspMI ACCTGC 2 cut(s) 40, 160
BsrDI GCAATG 3 cut(s) 396, 635, 688
BssECI CCNNGG 1 cut(s) 184
BssMI GATC 1 cut(s) 609
BssNI GRCGYC 1 cut(s) 415
BssT1I CCWWGG 1 cut(s) 184
Bst2UI CCWGG 1 cut(s) 9
BstACI GRCGYC 1 cut(s) 415
BstC8I GCNNGC 1 cut(s) 455
BstDSI CCRYGG 1 cut(s) 184
BstF5I GGATG 3 cut(s) 95, 514, 561
BstHHI GCGC 2 cut(s) 338, 539
BstKTI GATC 1 cut(s) 612
BstMBI GATC 1 cut(s) 609
BstMWI GCNNNNNNNGC 1 cut(s) 534
BstNI CCWGG 1 cut(s) 9
BstNSI RCATGY 1 cut(s) 457
BstPAI GACNNNNGTC 1 cut(s) 733
BstSCI CCNGG 1 cut(s) 7
BstSFI CTRYAG 3 cut(s) 33, 153, 213
BstV2I GAAGAC 1 cut(s) 53
BstXI CCANNNNNNTGG 1 cut(s) 102
Bsu15I ATCGAT 1 cut(s) 612
BsuTUI ATCGAT 1 cut(s) 612
BtgI CCRYGG 1 cut(s) 184
BtsCI GGATG 3 cut(s) 95, 514, 561
BveI ACCTGC 2 cut(s) 40, 160
Cac8I GCNNGC 1 cut(s) 455
CfoI GCGC 2 cut(s) 338, 539
Cfr13I GGNCC 1 cut(s) 188
ClaI ATCGAT 1 cut(s) 612
CseI GACGC 1 cut(s) 404
Csp6I GTAC 3 cut(s) 15, 81, 483
CviAII CATG 4 cut(s) 102, 185, 454, 710
CviJI RGCY 6 cut(s) 258, 322, 377, 383, 528, 688
CviKI_1 RGCY 6 cut(s) 258, 322, 377, 383, 528, 688
CviQI GTAC 3 cut(s) 15, 81, 483
DpnI GATC 1 cut(s) 611
DpnII GATC 1 cut(s) 609
DriI GACNNNNNGTC 1 cut(s) 54
Eam1105I GACNNNNNGTC 1 cut(s) 54
Eco130I CCWWGG 1 cut(s) 184
Eco24I GRGCYC 1 cut(s) 260
Eco47I GGWCC 1 cut(s) 188
EcoRI GAATTC 1 cut(s) 315
EcoRII CCWGG 1 cut(s) 7
EcoT14I CCWWGG 1 cut(s) 184
EcoT22I ATGCAT 1 cut(s) 635
EcoT38I GRGCYC 1 cut(s) 260
ErhI CCWWGG 1 cut(s) 184
FaeI CATG 4 cut(s) 105, 188, 457, 713
FatI CATG 4 cut(s) 101, 184, 453, 709
FauNDI CATATG 1 cut(s) 340
FokI GGATG 3 cut(s) 82, 521, 568
FriOI GRGCYC 1 cut(s) 260
FspBI CTAG 2 cut(s) 78, 126
GlaI GCGC 2 cut(s) 337, 538
HgaI GACGC 1 cut(s) 404
HhaI GCGC 2 cut(s) 338, 539
Hin1I GRCGYC 1 cut(s) 415
Hin1II CATG 4 cut(s) 105, 188, 457, 713
Hin6I GCGC 2 cut(s) 336, 537
HinP1I GCGC 2 cut(s) 336, 537
HinfI GANTC 3 cut(s) 4, 266, 350
HphI GGTGA 2 cut(s) 141, 619
Hpy166II GTNNAC 2 cut(s) 62, 668
Hpy188I TCNGA 4 cut(s) 255, 308, 355, 622
Hpy188III TCNNGA 3 cut(s) 131, 173, 692
Hpy8I GTNNAC 2 cut(s) 62, 668
Hpy99I CGWCG 1 cut(s) 420
HpyAV CCTTC 1 cut(s) 493
HpyCH4IV ACGT 1 cut(s) 17
HpyCH4V TGCA 6 cut(s) 35, 155, 278, 512, 587, 633
HpyF10VI GCNNNNNNNGC 1 cut(s) 534
HpySE526I ACGT 1 cut(s) 17
Hsp92I GRCGYC 1 cut(s) 415
Hsp92II CATG 4 cut(s) 105, 188, 457, 713
HspAI GCGC 2 cut(s) 336, 537
Kzo9I GATC 1 cut(s) 609
LmnI GCTCC 1 cut(s) 534
LpnPI CCDG 8 cut(s) 21, 45, 116, 165, 213, 516, 579, 708
LweI GCATC 1 cut(s) 499
MaeI CTAG 2 cut(s) 78, 126
MaeII ACGT 1 cut(s) 17
MalI GATC 1 cut(s) 611
MboI GATC 1 cut(s) 609
MboII GAAGA 3 cut(s) 58, 188, 635
MfeI CAATTG 2 cut(s) 361, 461
MhlI GDGCHC 1 cut(s) 260
MluCI AATT 8 cut(s) 69, 249, 295, 302, 315, 361, 461, 702
MmeI TCCRAC 2 cut(s) 292, 533
MnlI CCTC 2 cut(s) 484, 657
Mph1103I ATGCAT 1 cut(s) 635
MseI TTAA 4 cut(s) 24, 495, 504, 516
MslI CAYNNNNRTG 2 cut(s) 100, 663
MspR9I CCNGG 1 cut(s) 9
MunI CAATTG 2 cut(s) 361, 461
MvaI CCWGG 1 cut(s) 9
MwoI GCNNNNNNNGC 1 cut(s) 534
NcoI CCATGG 1 cut(s) 184
NdeI CATATG 1 cut(s) 340
NdeII GATC 1 cut(s) 609
NlaIII CATG 4 cut(s) 105, 188, 457, 713
NsiI ATGCAT 1 cut(s) 635
NspI RCATGY 1 cut(s) 457
OliI CACNNNNGTG 1 cut(s) 663
PaeI GCATGC 1 cut(s) 457
PaqCI CACCTGC 1 cut(s) 160
PfeI GAWTC 3 cut(s) 4, 266, 350
PshAI GACNNNNGTC 1 cut(s) 733
Psp6I CCWGG 1 cut(s) 7
PspGI CCWGG 1 cut(s) 7
PspPI GGNCC 1 cut(s) 188
PstI CTGCAG 2 cut(s) 37, 157
RsaI GTAC 3 cut(s) 16, 82, 484
RsaNI GTAC 3 cut(s) 15, 81, 483
RseI CAYNNNNRTG 2 cut(s) 100, 663
SaqAI TTAA 4 cut(s) 24, 495, 504, 516
Sau3AI GATC 1 cut(s) 609
Sau96I GGNCC 1 cut(s) 188
ScaI AGTACT 1 cut(s) 82
ScrFI CCNGG 1 cut(s) 9
SduI GDGCHC 1 cut(s) 260
SfaNI GCATC 1 cut(s) 499
SfcI CTRYAG 3 cut(s) 33, 153, 213
SinI GGWCC 1 cut(s) 188
SmiMI CAYNNNNRTG 2 cut(s) 100, 663
SpeI ACTAGT 1 cut(s) 77
SphI GCATGC 1 cut(s) 457
Sse9I AATT 8 cut(s) 69, 249, 295, 302, 315, 361, 461, 702
SsiI CCGC 1 cut(s) 99
SspMI CTAG 2 cut(s) 78, 126
StyD4I CCNGG 1 cut(s) 7
StyI CCWWGG 1 cut(s) 184
TaiI ACGT 1 cut(s) 20
TaqI TCGA 3 cut(s) 403, 418, 612
TasI AATT 8 cut(s) 69, 249, 295, 302, 315, 361, 461, 702
TatI WGTACW 1 cut(s) 80
TfiI GAWTC 3 cut(s) 4, 266, 350
Tru1I TTAA 4 cut(s) 24, 495, 504, 516
Tru9I TTAA 4 cut(s) 24, 495, 504, 516
TspDTI ATGAA 4 cut(s) 17, 177, 194, 483
VpaK11BI GGWCC 1 cut(s) 188
XapI RAATTY 2 cut(s) 249, 315
XceI RCATGY 1 cut(s) 457
XcmI CCANNNNNNNNNTGG 2 cut(s) 308, 527
XspI CTAG 2 cut(s) 78, 126
ZrmI AGTACT 1 cut(s) 82
Zsp2I ATGCAT 1 cut(s) 635
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.