Rh1BG079000

isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0000143
Physical Location & Seq
Forward (+)
12319634 .. 12320735
1102 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG079000.1

Sequence Viewer

Length: 933 bp
ATGGATGTTAATGAATTTCCTGAGTTGGAGTTGCTTCAACAGTACTTTTTAAAGACAAGTGCTGATAATCGGTTGATGCTGCGGAAAAGAGTGAGAGAACTTGTACCATCCCTAGCAACTCTTATTGAACCAGGGGTGAAGTCCAGAACACGAGGTCAATTGAAGGAGAGAATTGATATGCCCATTCAGAAAAACACATCTGTGTTTGAGTTAATACAATCTGCATCTGTGGATAGTCATTCACCTAGTGTGACTGGTGGTACAATGGATGTTTTGAAAAAATCAACACATAAGCAGACAGGGCCGATGAAGGAGAAGGTTTACCGGACACTCTCAGCAAAAGTTATGTCATATATCGATTCATTTCCAGTGGGATTGATGCCTTACATAGACCAAGTCAAGGATGTATGTGATGATGGTAACTGTGGGTTTAGAGCGGTCGCTGATTTAGTAGGATTGGGCGAGAACGCATACTTGCAAGTGAGAAATGACCTACTGACTGAATTGTCTTCCTATTCTGCACATTATAGTGAGCTATACGGCAGCGCAGAGAAGGTTCGTGACTTGGCACAATCACTTTCATTCTTCAATGAGGGTAGAGCGCCATTTGACAGATGCATGACAATGCCTGACATGGGTCATCTCATAGCATCATGCTATAAGATTGTACTCTTCCACTTTTCAGCTACTCAATGCCTTACCTTCCTACCTCTTCGATCAACACCTGTTCCTTTGCCAATGCGTAGACATATTGCTATTGGTCTTGTTAATGATTCCCATTATGTTGAGGTATTCTTAAAGCCAGGACATCCTGTACCACCCATTGAGTCTAATTGGATCAGATATCATACACAAGCTGCACAAGGGTGGGATACTATATATACTGATTGTATTGCACACTTCCAGTTGCTTGCCCGCTCGGATAACATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00310 map00310
Pfam Domains
Protein Families
FAR1 MULE SET

Protein Analysis

310

Amino Acids

34.99

Weight (kDa)

6.79

Isoelectric Point (pI)

48.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000143)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G76710 AT1G76710 AT1G76710 AT1G76710
fragaria_vesca FvH4_1g20063 FvH4_2g15231 FvH4_3g04011 FvH4_3g28681 FvH4_4g01411 FvH4_4g10181 FvH4_4g15922 FvH4_4g16651 FvH4_4g16652 FvH4_5g13892 FvH4_5g13893 FvH4_5g20623 FvH4_5g20623 FvH4_5g20623 FvH4_5g20623 FvH4_5g25511 FvH4_6g12551 FvH4_6g12552 FvH4_6g38841 FvH4_7g04391
malus_domestica MD05G1031300.v1.1 MD05G1031400.v1.1 MD05G1031500.v1.1 MD08G1164400.v1.1 MD10G1032900.v1.1 MD10G1033000.v1.1 MD10G1033100.v1.1
prunus_persica Prupe.3G240700_v2.0.a1 Prupe.7G144600_v2.0.a1 Prupe.8G038500_v2.0.a1 Prupe.8G038500_v2.0.a1
pyrus_communis pycom05g02250 pycom05g02260 pycom05g02270 pycom05g02280 pycom08g14160 pycom10g02100 pycom10g02110 pycom10g02130
rosa_chinensis RchiOBHm_Chr1g0329481 RchiOBHm_Chr1g0329491 RchiOBHm_Chr1g0341531 RchiOBHm_Chr3g0464811 RchiOBHm_Chr3g0494701 RchiOBHm_Chr3g0497501 RchiOBHm_Chr4g0385841 RchiOBHm_Chr5g0061181 RchiOBHm_Chr6g0263001 RchiOBHm_Chr7g0193111 RchiOBHm_Chr7g0206281 RchiOBHm_Chr7g0206311
rosa_laevigata RLG00000018908 RLG00000028528 RLG00000028803 RLG00000029882 RLG00000029883 RLG00000030361
rosa_multiflora Rmu_co8196328.1_g000001 Rmu_co8259135.1_g000001 Rmu_co8269185.1_g000001 Rmu_sc0000076.1_g000019 Rmu_sc0000311.1_g000007 Rmu_sc0000429.1_g000038 Rmu_sc0000429.1_g000039 Rmu_sc0000429.1_g000040 Rmu_sc0000511.1_g000005 Rmu_sc0000539.1_g000054 Rmu_sc0000566.1_g000039 Rmu_sc0000805.1_g000032 Rmu_sc0000870.1_g000073 Rmu_sc0000870.1_g000074 Rmu_sc0001010.1_g000018 Rmu_sc0001083.1_g000013 Rmu_sc0001114.1_g000011 Rmu_sc0001702.1_g000027 Rmu_sc0001779.1_g000012 Rmu_sc0002923.1_g000036 Rmu_sc0003242.1_g000011 Rmu_sc0003291.1_g000036 Rmu_sc0003393.1_g000012 Rmu_sc0003872.1_g000016 Rmu_sc0003872.1_g000017 Rmu_sc0003872.1_g000018 Rmu_sc0004084.1_g000020 Rmu_sc0004386.1_g000005 Rmu_sc0004622.1_g000005 Rmu_sc0004742.1_g000021 Rmu_sc0004755.1_g000020 Rmu_sc0004805.1_g000036 Rmu_sc0005065.1_g000006 Rmu_sc0005177.1_g000004 Rmu_sc0006373.1_g000003 Rmu_sc0006373.1_g000004 Rmu_sc0007121.1_g000002 Rmu_sc0007943.1_g000003 Rmu_sc0010368.1_g000006 Rmu_sc0010543.1_g000001 Rmu_sc0012591.1_g000006 Rmu_sc0013504.1_g000009 Rmu_sc0015025.1_g000001 Rmu_sc0016170.1_g000001 Rmu_sc0017156.1_g000001 Rmu_sc0026439.1_g000001
rosa_roxburghii Rroxscaffold_175G00432280 Rroxscaffold_1G00030190 Rroxscaffold_1G00030880 Rroxscaffold_2G00090520 Rroxscaffold_3G00227940 Rroxscaffold_3G00233400 Rroxscaffold_3G00238500 Rroxscaffold_3G00251650 Rroxscaffold_4G00301570 Rroxscaffold_4G00321040 Rroxscaffold_5G00350880 Rroxscaffold_7G00184400
rosa_rugosa Rorug01G0080800 Rorug01G0080900 Rorug01G0193900 Rorug02G0275900 Rorug02G0275900 Rorug02G0275900 Rorug02G0305400 Rorug02G0311800 Rorug02G0350400 Rorug02G0381300 Rorug03G0136700 Rorug03G0181900 Rorug03G0268000 Rorug04G0301600 Rorug05G0175100 Rorug05G0250700 Rorug05G0298200 Rorug05G0596000 Rorug06G0029500 Rorug07G0094300 Rorug07G0094300 Rorug07G0095400 Rorug07G0140100
rosa_samantha Rh1AG099200 Rh1AG190500 Rh1BG078900 Rh1BG079000 Rh1BG079100 Rh1CG084600 Rh1CG084700 Rh1CG095300 Rh1CG175900 Rh1DG103300 Rh1DG150400 Rh2AG079300 Rh2AG272400 Rh2AG464800 Rh2AG507400 Rh2DG078300 Rh2DG078400 Rh3CG206900 Rh3CG295400 Rh3DG206800 Rh3DG356200 Rh4CG071500 Rh4CG179200 Rh4DG064700 Rh5CG362400 Rh7AG212300 Rh7AG226200 Rh7BG222200
rosa_wichuraiana Rw0G009990 Rw0G011260 Rw0G011270 Rw0G012910 Rw0G013740 Rw1G007740 Rw1G013050 Rw1G014230 Rw2G014270 Rw3G012720 Rw3G028110 Rw4G006630 Rw4G015270 Rw4G016160 Rw4G031380 Rw5G011440 Rw5G029180 Rw5G048360 Rw5G048430 Rw5G048780 Rw6G005250 Rw6G006390 Rw7G002840 Rw7G014080 Rw7G019650 Rw7G032790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 505
AccBSI CCGCTC 2 cut(s) 437, 918
AccI GTMKAC 1 cut(s) 745
AciI CCGC 3 cut(s) 82, 437, 916
AclWI GGATC 1 cut(s) 845
AcsI RAATTY 1 cut(s) 14
AdeI CACNNNGTG 1 cut(s) 248
AfaI GTAC 5 cut(s) 44, 105, 262, 669, 816
AfiI CCNNNNNNNGG 2 cut(s) 400, 635
AgsI TTSAA 5 cut(s) 38, 128, 163, 277, 589
AjnI CCWGG 2 cut(s) 130, 802
AleI CACNNNNGTG 2 cut(s) 200, 865
AluBI AGCT 3 cut(s) 535, 686, 857
AluI AGCT 3 cut(s) 535, 686, 857
AlwI GGATC 1 cut(s) 845
AoxI GGCC 1 cut(s) 302
ApeKI GCWGC 3 cut(s) 79, 543, 857
ApoI RAATTY 1 cut(s) 14
ArsI GACNNNNNNTTYG 2 cut(s) 332, 364
AspLEI GCGC 2 cut(s) 548, 604
AspS9I GGNCC 1 cut(s) 302
AsuHPI GGTGA 2 cut(s) 148, 234
BauI CACGAG 1 cut(s) 150
BbsI GAAGAC 1 cut(s) 501
BbvI GCAGC 3 cut(s) 66, 555, 844
BccI CCATC 2 cut(s) 115, 410
BceAI ACGGC 1 cut(s) 556
BciT130I CCWGG 2 cut(s) 132, 804
BciVI GTATCC 1 cut(s) 865
BfaI CTAG 2 cut(s) 113, 246
BfoI RGCGCY 1 cut(s) 605
BfuI GTATCC 1 cut(s) 865
BisI GCNGC 3 cut(s) 80, 544, 858
BlsI GCNGC 3 cut(s) 81, 545, 859
BmcAI AGTACT 1 cut(s) 44
Bme1390I CCNGG 2 cut(s) 132, 804
BmgT120I GGNCC 1 cut(s) 302
BmrFI CCNGG 2 cut(s) 132, 804
BmsI GCATC 5 cut(s) 66, 233, 369, 605, 659
BoxI GACNNNNGTC 1 cut(s) 636
BpiI GAAGAC 1 cut(s) 501
Bsa29I ATCGAT 1 cut(s) 357
BsaJI CCNNGG 1 cut(s) 131
BsaWI WCCGGW 1 cut(s) 324
Bsc4I CCNNNNNNNGG 2 cut(s) 400, 635
Bse1I ACTGG 3 cut(s) 259, 368, 904
BseBI CCWGG 2 cut(s) 132, 804
BseCI ATCGAT 1 cut(s) 357
BseDI CCNNGG 1 cut(s) 131
BseGI GGATG 5 cut(s) 10, 107, 274, 409, 808
BseLI CCNNNNNNNGG 2 cut(s) 400, 635
BseMII CTCAG 2 cut(s) 12, 348
BseNI ACTGG 3 cut(s) 259, 368, 904
BseXI GCAGC 3 cut(s) 66, 555, 844
BsgI GTGCAG 2 cut(s) 504, 843
Bsh1285I CGRYCG 1 cut(s) 441
BshFI GGCC 1 cut(s) 304
BshVI ATCGAT 1 cut(s) 357
BsiEI CGRYCG 1 cut(s) 441
BsiSI CCGG 1 cut(s) 325
BslI CCNNNNNNNGG 2 cut(s) 400, 635
BsnI GGCC 1 cut(s) 304
Bsp143I GATC 2 cut(s) 716, 837
BspACI CCGC 3 cut(s) 82, 437, 916
BspANI GGCC 1 cut(s) 304
BspCNI CTCAG 2 cut(s) 13, 347
BspDI ATCGAT 1 cut(s) 357
BspPI GGATC 1 cut(s) 845
BsrBI CCGCTC 2 cut(s) 437, 918
BsrI ACTGG 3 cut(s) 259, 368, 904
BssECI CCNNGG 1 cut(s) 131
BssMI GATC 2 cut(s) 716, 837
BssSI CACGAG 1 cut(s) 150
Bst2BI CACGAG 1 cut(s) 150
Bst2UI CCWGG 2 cut(s) 132, 804
Bst4CI ACNGT 2 cut(s) 42, 425
Bst6I CTCTTC 2 cut(s) 677, 717
BstC8I GCNNGC 2 cut(s) 912, 916
BstDEI CTNAG 2 cut(s) 21, 334
BstF5I GGATG 5 cut(s) 10, 107, 274, 409, 808
BstH2I RGCGCY 1 cut(s) 605
BstHHI GCGC 2 cut(s) 548, 604
BstKTI GATC 2 cut(s) 719, 840
BstMBI GATC 2 cut(s) 716, 837
BstMCI CGRYCG 1 cut(s) 441
BstMWI GCNNNNNNNGC 1 cut(s) 301
BstNI CCWGG 2 cut(s) 132, 804
BstPAI GACNNNNGTC 1 cut(s) 636
BstSCI CCNGG 2 cut(s) 130, 802
BstV1I GCAGC 3 cut(s) 66, 555, 844
BstV2I GAAGAC 1 cut(s) 501
Bsu15I ATCGAT 1 cut(s) 357
BsuI GTATCC 1 cut(s) 865
BsuRI GGCC 1 cut(s) 304
BsuTUI ATCGAT 1 cut(s) 357
BtsCI GGATG 5 cut(s) 10, 107, 274, 409, 808
BtsIMutI CAGTG 1 cut(s) 375
Cac8I GCNNGC 2 cut(s) 912, 916
CfoI GCGC 2 cut(s) 548, 604
Cfr13I GGNCC 1 cut(s) 302
ClaI ATCGAT 1 cut(s) 357
Csp6I GTAC 5 cut(s) 43, 104, 261, 668, 815
CviAII CATG 3 cut(s) 619, 634, 654
CviJI RGCY 5 cut(s) 304, 535, 686, 802, 857
CviKI_1 RGCY 5 cut(s) 304, 535, 686, 802, 857
CviQI GTAC 5 cut(s) 43, 104, 261, 668, 815
DdeI CTNAG 2 cut(s) 21, 334
DpnI GATC 2 cut(s) 718, 839
DpnII GATC 2 cut(s) 716, 837
DraI TTTAAA 1 cut(s) 51
DraIII CACNNNGTG 1 cut(s) 248
DrdI GACNNNNNNGTC 1 cut(s) 505
DseDI GACNNNNNNGTC 1 cut(s) 505
Eam1104I CTCTTC 2 cut(s) 677, 717
EarI CTCTTC 2 cut(s) 677, 717
Eco32I GATATC 1 cut(s) 845
EcoRII CCWGG 2 cut(s) 130, 802
EcoRV GATATC 1 cut(s) 845
EcoT22I ATGCAT 1 cut(s) 620
FaeI CATG 3 cut(s) 622, 637, 657
FatI CATG 3 cut(s) 618, 633, 653
FauI CCCGC 1 cut(s) 923
FblI GTMKAC 1 cut(s) 745
Fnu4HI GCNGC 3 cut(s) 80, 544, 858
FokI GGATG 5 cut(s) 17, 94, 281, 416, 795
Fsp4HI GCNGC 3 cut(s) 80, 544, 858
FspBI CTAG 2 cut(s) 113, 246
GlaI GCGC 2 cut(s) 547, 603
GluI GCNGC 3 cut(s) 80, 544, 858
HaeII RGCGCY 1 cut(s) 605
HaeIII GGCC 1 cut(s) 304
HapII CCGG 1 cut(s) 325
HhaI GCGC 2 cut(s) 548, 604
Hin1II CATG 3 cut(s) 622, 637, 657
Hin6I GCGC 2 cut(s) 546, 602
HinP1I GCGC 2 cut(s) 546, 602
HinfI GANTC 3 cut(s) 359, 773, 827
HpaII CCGG 1 cut(s) 325
HphI GGTGA 2 cut(s) 148, 234
Hpy166II GTNNAC 2 cut(s) 322, 746
Hpy188I TCNGA 3 cut(s) 189, 842, 922
Hpy188III TCNNGA 3 cut(s) 20, 144, 560
Hpy8I GTNNAC 2 cut(s) 322, 746
HpyAV CCTTC 5 cut(s) 157, 304, 310, 547, 712
HpyCH4III ACNGT 2 cut(s) 42, 425
HpyCH4V TGCA 6 cut(s) 224, 478, 521, 618, 860, 896
HpyF10VI GCNNNNNNNGC 1 cut(s) 301
HpyF3I CTNAG 2 cut(s) 21, 334
Hsp92II CATG 3 cut(s) 622, 637, 657
HspAI GCGC 2 cut(s) 546, 602
Kzo9I GATC 2 cut(s) 716, 837
Lsp1109I GCAGC 3 cut(s) 66, 555, 844
LweI GCATC 5 cut(s) 66, 233, 369, 605, 659
MaeI CTAG 2 cut(s) 113, 246
MaeIII GTNAC 3 cut(s) 250, 419, 560
MalI GATC 2 cut(s) 718, 839
MbiI CCGCTC 2 cut(s) 437, 918
MboI GATC 2 cut(s) 716, 837
MboII GAAGA 4 cut(s) 501, 577, 664, 704
MfeI CAATTG 1 cut(s) 158
MluCI AATT 5 cut(s) 14, 158, 171, 503, 832
MlyI GAGTC 1 cut(s) 836
MmeI TCCRAC 1 cut(s) 6
MnlI CCTC 4 cut(s) 146, 586, 720, 781
Mph1103I ATGCAT 1 cut(s) 620
MseI TTAA 5 cut(s) 9, 50, 212, 768, 797
MslI CAYNNNNRTG 4 cut(s) 200, 528, 623, 865
MspI CCGG 1 cut(s) 325
MspR9I CCNGG 2 cut(s) 132, 804
MunI CAATTG 1 cut(s) 158
MvaI CCWGG 2 cut(s) 132, 804
MwoI GCNNNNNNNGC 1 cut(s) 301
NdeII GATC 2 cut(s) 716, 837
NlaIII CATG 3 cut(s) 622, 637, 657
NmuCI GTSAC 2 cut(s) 250, 560
NsiI ATGCAT 1 cut(s) 620
OliI CACNNNNGTG 2 cut(s) 200, 865
PfeI GAWTC 2 cut(s) 359, 773
PflFI GACNNNGTC 1 cut(s) 395
PkrI GCNGC 3 cut(s) 81, 545, 859
PleI GAGTC 1 cut(s) 835
PpsI GAGTC 1 cut(s) 835
PshAI GACNNNNGTC 1 cut(s) 636
Psp6I CCWGG 2 cut(s) 130, 802
PspGI CCWGG 2 cut(s) 130, 802
PspPI GGNCC 1 cut(s) 302
PsyI GACNNNGTC 1 cut(s) 395
RsaI GTAC 5 cut(s) 44, 105, 262, 669, 816
RsaNI GTAC 5 cut(s) 43, 104, 261, 668, 815
RseI CAYNNNNRTG 4 cut(s) 200, 528, 623, 865
SaqAI TTAA 5 cut(s) 9, 50, 212, 768, 797
SatI GCNGC 3 cut(s) 80, 544, 858
Sau3AI GATC 2 cut(s) 716, 837
Sau96I GGNCC 1 cut(s) 302
ScaI AGTACT 1 cut(s) 44
SchI GAGTC 1 cut(s) 836
ScrFI CCNGG 2 cut(s) 132, 804
SfaNI GCATC 5 cut(s) 66, 233, 369, 605, 659
SmiMI CAYNNNNRTG 4 cut(s) 200, 528, 623, 865
Sse9I AATT 5 cut(s) 14, 158, 171, 503, 832
SsiI CCGC 3 cut(s) 82, 437, 916
SspMI CTAG 2 cut(s) 113, 246
StyD4I CCNGG 2 cut(s) 130, 802
TaaI ACNGT 2 cut(s) 42, 425
TaqI TCGA 2 cut(s) 357, 715
TasI AATT 5 cut(s) 14, 158, 171, 503, 832
TatI WGTACW 2 cut(s) 42, 667
TfiI GAWTC 2 cut(s) 359, 773
Tru1I TTAA 5 cut(s) 9, 50, 212, 768, 797
Tru9I TTAA 5 cut(s) 9, 50, 212, 768, 797
TscAI CASTG 1 cut(s) 375
TseFI GTSAC 2 cut(s) 250, 560
TseI GCWGC 3 cut(s) 79, 543, 857
Tsp45I GTSAC 2 cut(s) 250, 560
TspDTI ATGAA 4 cut(s) 27, 323, 351, 570
TspRI CASTG 1 cut(s) 375
Tth111I GACNNNGTC 1 cut(s) 395
XapI RAATTY 1 cut(s) 14
XmiI GTMKAC 1 cut(s) 745
XspI CTAG 2 cut(s) 113, 246
ZrmI AGTACT 1 cut(s) 44
Zsp2I ATGCAT 1 cut(s) 620
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.