Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0000143

Physical Location & Seq

Genomic Coordinates Reverse (-)

13113837 .. 13114136

Gene Structure 300 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0080900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 300 bp

ATGACTGAGGATGACTACCATATCACTCCAAGTACCATTGCTCCAAACATTAGTTTTTCACAGCGTGTGAATGATAAGCTGAATTTAGAATGGAGGTGTGCTATTATAATCAAACTTATGGGGAAACCCAATGCTACTAATGCCTATAGCTACATGTATAATGCTCTGAAGAGAAAATGGAATCCCCAAGGTCCCTGGCATTTAATTGATCTTCCTAATGATTTTTACATTGTGAAATTCAATTTGCAAGAGGATATGAATGTGGCTTTGTTTGGTAGTCCTTGGATTCTTGCTGGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006281 GO:0006325 GO:0006464 GO:0006479 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008213 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009791 GO:0009987 GO:0010224 GO:0010228 GO:0016043 GO:0016569 GO:0016570 GO:0016571 GO:0019538 GO:0022414 GO:0032259 GO:0032501 GO:0032502 GO:0033554 GO:0034641 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046483 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0051276 GO:0051716 GO:0061458 GO:0071704 GO:0071840 GO:0090304 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00310 map00310

Pfam Domains

Protein Families

SET

Protein Analysis

99

Amino Acids

11.49

Weight (kDa)

6.71

Isoelectric Point (pI)

52.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF4283	PF14111	28 - 97	3.8e-07	Domain of unknown function (DUF4283)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000143)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G76710 AT1G76710 AT1G76710 AT1G76710
fragaria_vesca	FvH4_1g20063 FvH4_2g15231 FvH4_3g04011 FvH4_3g28681 FvH4_4g01411 FvH4_4g10181 FvH4_4g15922 FvH4_4g16651 FvH4_4g16652 FvH4_5g13892 FvH4_5g13893 FvH4_5g20623 FvH4_5g20623 FvH4_5g20623 FvH4_5g20623 FvH4_5g25511 FvH4_6g12551 FvH4_6g12552 FvH4_6g38841 FvH4_7g04391
malus_domestica	MD05G1031300.v1.1 MD05G1031400.v1.1 MD05G1031500.v1.1 MD08G1164400.v1.1 MD10G1032900.v1.1 MD10G1033000.v1.1 MD10G1033100.v1.1
prunus_persica	Prupe.3G240700_v2.0.a1 Prupe.7G144600_v2.0.a1 Prupe.8G038500_v2.0.a1 Prupe.8G038500_v2.0.a1
pyrus_communis	pycom05g02250 pycom05g02260 pycom05g02270 pycom05g02280 pycom08g14160 pycom10g02100 pycom10g02110 pycom10g02130
rosa_chinensis	RchiOBHm_Chr1g0329481 RchiOBHm_Chr1g0329491 RchiOBHm_Chr1g0341531 RchiOBHm_Chr3g0464811 RchiOBHm_Chr3g0494701 RchiOBHm_Chr3g0497501 RchiOBHm_Chr4g0385841 RchiOBHm_Chr5g0061181 RchiOBHm_Chr6g0263001 RchiOBHm_Chr7g0193111 RchiOBHm_Chr7g0206281 RchiOBHm_Chr7g0206311
rosa_laevigata	RLG00000018908 RLG00000028528 RLG00000028803 RLG00000029882 RLG00000029883 RLG00000030361
rosa_multiflora	Rmu_co8196328.1_g000001 Rmu_co8259135.1_g000001 Rmu_co8269185.1_g000001 Rmu_sc0000076.1_g000019 Rmu_sc0000311.1_g000007 Rmu_sc0000429.1_g000038 Rmu_sc0000429.1_g000039 Rmu_sc0000429.1_g000040 Rmu_sc0000511.1_g000005 Rmu_sc0000539.1_g000054 Rmu_sc0000566.1_g000039 Rmu_sc0000805.1_g000032 Rmu_sc0000870.1_g000073 Rmu_sc0000870.1_g000074 Rmu_sc0001010.1_g000018 Rmu_sc0001083.1_g000013 Rmu_sc0001114.1_g000011 Rmu_sc0001702.1_g000027 Rmu_sc0001779.1_g000012 Rmu_sc0002923.1_g000036 Rmu_sc0003242.1_g000011 Rmu_sc0003291.1_g000036 Rmu_sc0003393.1_g000012 Rmu_sc0003872.1_g000016 Rmu_sc0003872.1_g000017 Rmu_sc0003872.1_g000018 Rmu_sc0004084.1_g000020 Rmu_sc0004386.1_g000005 Rmu_sc0004622.1_g000005 Rmu_sc0004742.1_g000021 Rmu_sc0004755.1_g000020 Rmu_sc0004805.1_g000036 Rmu_sc0005065.1_g000006 Rmu_sc0005177.1_g000004 Rmu_sc0006373.1_g000003 Rmu_sc0006373.1_g000004 Rmu_sc0007121.1_g000002 Rmu_sc0007943.1_g000003 Rmu_sc0010368.1_g000006 Rmu_sc0010543.1_g000001 Rmu_sc0012591.1_g000006 Rmu_sc0013504.1_g000009 Rmu_sc0015025.1_g000001 Rmu_sc0016170.1_g000001 Rmu_sc0017156.1_g000001 Rmu_sc0026439.1_g000001
rosa_roxburghii	Rroxscaffold_175G00432280 Rroxscaffold_1G00030190 Rroxscaffold_1G00030880 Rroxscaffold_2G00090520 Rroxscaffold_3G00227940 Rroxscaffold_3G00233400 Rroxscaffold_3G00238500 Rroxscaffold_3G00251650 Rroxscaffold_4G00301570 Rroxscaffold_4G00321040 Rroxscaffold_5G00350880 Rroxscaffold_7G00184400
rosa_rugosa	Rorug01G0080800 Rorug01G0080900 Rorug01G0193900 Rorug02G0275900 Rorug02G0275900 Rorug02G0275900 Rorug02G0305400 Rorug02G0311800 Rorug02G0350400 Rorug02G0381300 Rorug03G0136700 Rorug03G0181900 Rorug03G0268000 Rorug04G0301600 Rorug05G0175100 Rorug05G0250700 Rorug05G0298200 Rorug05G0596000 Rorug06G0029500 Rorug07G0094300 Rorug07G0094300 Rorug07G0095400 Rorug07G0140100
rosa_samantha	Rh1AG099200 Rh1AG190500 Rh1BG078900 Rh1BG079000 Rh1BG079100 Rh1CG084600 Rh1CG084700 Rh1CG095300 Rh1CG175900 Rh1DG103300 Rh1DG150400 Rh2AG079300 Rh2AG272400 Rh2AG464800 Rh2AG507400 Rh2DG078300 Rh2DG078400 Rh3CG206900 Rh3CG295400 Rh3DG206800 Rh3DG356200 Rh4CG071500 Rh4CG179200 Rh4DG064700 Rh5CG362400 Rh7AG212300 Rh7AG226200 Rh7BG222200
rosa_wichuraiana	Rw0G009990 Rw0G011260 Rw0G011270 Rw0G012910 Rw0G013740 Rw1G007740 Rw1G013050 Rw1G014230 Rw2G014270 Rw3G012720 Rw3G028110 Rw4G006630 Rw4G015270 Rw4G016160 Rw4G031380 Rw5G011440 Rw5G029180 Rw5G048360 Rw5G048430 Rw5G048780 Rw6G005250 Rw6G006390 Rw7G002840 Rw7G014080 Rw7G019650 Rw7G032790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	107
AcsI	RAATTY	2 cut(s)	82, 236
AcuI	CTGAAG	1 cut(s)	188
AdeI	CACNNNGTG	1 cut(s)	65
AfaI	GTAC	1 cut(s)	34
AflIII	ACRYGT	1 cut(s)	153
AgsI	TTSAA	1 cut(s)	241
AjnI	CCWGG	1 cut(s)	194
AluBI	AGCT	2 cut(s)	79, 150
AluI	AGCT	2 cut(s)	79, 150
ApoI	RAATTY	2 cut(s)	82, 236
AspS9I	GGNCC	1 cut(s)	191
AvaII	GGWCC	1 cut(s)	191
BciT130I	CCWGG	1 cut(s)	196
BfmI	CTRYAG	1 cut(s)	145
Bme1390I	CCNGG	1 cut(s)	196
Bme18I	GGWCC	1 cut(s)	191
BmgT120I	GGNCC	1 cut(s)	191
BmiI	GGNNCC	1 cut(s)	193
BmrFI	CCNGG	1 cut(s)	196
BsaJI	CCNNGG	3 cut(s)	187, 194, 281
BsaXI	ACNNNNNCTCC	2 cut(s)	25, 55
Bse3DI	GCAATG	1 cut(s)	36
BseBI	CCWGG	1 cut(s)	196
BseDI	CCNNGG	3 cut(s)	187, 194, 281
BseGI	GGATG	1 cut(s)	16
BseMI	GCAATG	1 cut(s)	36
BseYI	CCCAGC	1 cut(s)	293
BslFI	GGGAC	1 cut(s)	177
BsmFI	GGGAC	1 cut(s)	177
Bsp143I	GATC	1 cut(s)	208
BspLI	GGNNCC	1 cut(s)	193
BsrDI	GCAATG	1 cut(s)	36
BssECI	CCNNGG	3 cut(s)	187, 194, 281
BssMI	GATC	1 cut(s)	208
BssT1I	CCWWGG	2 cut(s)	187, 281
Bst2UI	CCWGG	1 cut(s)	196
Bst6I	CTCTTC	1 cut(s)	164
BstDEI	CTNAG	1 cut(s)	6
BstF5I	GGATG	1 cut(s)	16
BstKTI	GATC	1 cut(s)	211
BstMBI	GATC	1 cut(s)	208
BstMWI	GCNNNNNNNGC	1 cut(s)	140
BstNI	CCWGG	1 cut(s)	196
BstNSI	RCATGY	1 cut(s)	157
BstSCI	CCNGG	1 cut(s)	194
BstSFI	CTRYAG	1 cut(s)	145
BtsCI	GGATG	1 cut(s)	16
Cfr13I	GGNCC	1 cut(s)	191
Csp6I	GTAC	1 cut(s)	33
CviAII	CATG	1 cut(s)	154
CviJI	RGCY	3 cut(s)	79, 150, 266
CviKI_1	RGCY	3 cut(s)	79, 150, 266
CviQI	GTAC	1 cut(s)	33
DdeI	CTNAG	1 cut(s)	6
DpnI	GATC	1 cut(s)	210
DpnII	GATC	1 cut(s)	208
DraIII	CACNNNGTG	1 cut(s)	65
Eam1104I	CTCTTC	1 cut(s)	164
EarI	CTCTTC	1 cut(s)	164
Eco130I	CCWWGG	2 cut(s)	187, 281
Eco47I	GGWCC	1 cut(s)	191
Eco57I	CTGAAG	1 cut(s)	188
EcoO109I	RGGNCCY	1 cut(s)	191
EcoRII	CCWGG	1 cut(s)	194
EcoT14I	CCWWGG	2 cut(s)	187, 281
ErhI	CCWWGG	2 cut(s)	187, 281
FaeI	CATG	1 cut(s)	157
FaiI	YATR	7 cut(s)	21, 107, 119, 147, 155, 159, 257
FaqI	GGGAC	1 cut(s)	177
FatI	CATG	1 cut(s)	153
FokI	GGATG	1 cut(s)	23
GsaI	CCCAGC	1 cut(s)	297
Hin1II	CATG	1 cut(s)	157
HinfI	GANTC	2 cut(s)	181, 286
Hpy188I	TCNGA	1 cut(s)	168
HpyCH4V	TGCA	1 cut(s)	247
HpyF10VI	GCNNNNNNNGC	1 cut(s)	140
HpyF3I	CTNAG	1 cut(s)	6
Hsp92II	CATG	1 cut(s)	157
Kzo9I	GATC	1 cut(s)	208
LmnI	GCTCC	1 cut(s)	46
LpnPI	CCDG	3 cut(s)	181, 208, 279
MalI	GATC	1 cut(s)	210
MboI	GATC	1 cut(s)	208
MboII	GAAGA	2 cut(s)	181, 203
MluCI	AATT	4 cut(s)	82, 204, 236, 241
MnlI	CCTC	2 cut(s)	87, 244
MseI	TTAA	1 cut(s)	203
MspR9I	CCNGG	1 cut(s)	196
MvaI	CCWGG	1 cut(s)	196
MwoI	GCNNNNNNNGC	1 cut(s)	140
NdeII	GATC	1 cut(s)	208
NlaIII	CATG	1 cut(s)	157
NlaIV	GGNNCC	1 cut(s)	193
NspI	RCATGY	1 cut(s)	157
PciI	ACATGT	1 cut(s)	153
PfeI	GAWTC	2 cut(s)	181, 286
PpuMI	RGGWCCY	1 cut(s)	191
PscI	ACATGT	1 cut(s)	153
PsiI	TTATAA	1 cut(s)	107
Psp5II	RGGWCCY	1 cut(s)	191
Psp6I	CCWGG	1 cut(s)	194
PspFI	CCCAGC	1 cut(s)	293
PspGI	CCWGG	1 cut(s)	194
PspN4I	GGNNCC	1 cut(s)	193
PspPI	GGNCC	1 cut(s)	191
PspPPI	RGGWCCY	1 cut(s)	191
RsaI	GTAC	1 cut(s)	34
RsaNI	GTAC	1 cut(s)	33
SaqAI	TTAA	1 cut(s)	203
Sau3AI	GATC	1 cut(s)	208
Sau96I	GGNCC	1 cut(s)	191
ScrFI	CCNGG	1 cut(s)	196
SetI	ASST	4 cut(s)	81, 98, 152, 193
SfcI	CTRYAG	1 cut(s)	145
SgeI	CNNG	8 cut(s)	42, 77, 166, 200, 207, 208, 260, 294
SinI	GGWCC	1 cut(s)	191
Sse9I	AATT	4 cut(s)	82, 204, 236, 241
StyD4I	CCNGG	1 cut(s)	194
StyI	CCWWGG	2 cut(s)	187, 281
TasI	AATT	4 cut(s)	82, 204, 236, 241
TfiI	GAWTC	2 cut(s)	181, 286
Tru1I	TTAA	1 cut(s)	203
Tru9I	TTAA	1 cut(s)	203
TspDTI	ATGAA	1 cut(s)	272
VpaK11BI	GGWCC	1 cut(s)	191
XapI	RAATTY	2 cut(s)	82, 236
XceI	RCATGY	1 cut(s)	157

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.