Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0000143

Physical Location & Seq

Genomic Coordinates Forward (+)

4263818 .. 4266775

Gene Structure 2958 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1033000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 333 bp

ATGGAAACAAATATTTCCAGTGATATATACTTAGTGGATACTTACCTATGGGAAGACGACGATGACAGATATTCAGTTGAGAAAATTCCACTGTACGATTCTGCAGAGGATGAGCCTTCGTCTAGGCTCTTCAAGGCTGTGAACTCCTCAGAGTTTGATGTTGCTGGGATGATGGTGAATGTCAATGTGGATTCTGAACATCAGTTGATGTCTACTGCTCTTGTTGTGCAATCACTTGATTCTGTTCCAATGGAGGGTGTAGTTGTGGAGGTAAAAACAGAAGTGAGCGAGGGGAGGAAACTTTATTCAGAAAACAATCAACTGTCTATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006281 GO:0006325 GO:0006464 GO:0006479 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008213 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009791 GO:0009987 GO:0010224 GO:0010228 GO:0016043 GO:0016569 GO:0016570 GO:0016571 GO:0019538 GO:0022414 GO:0032259 GO:0032501 GO:0032502 GO:0033554 GO:0034641 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046483 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0051276 GO:0051716 GO:0061458 GO:0071704 GO:0071840 GO:0090304 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00310 map00310

Pfam Domains

Protein Families

SET

Protein Analysis

111

Amino Acids

12.39

Weight (kDa)

4.05

Isoelectric Point (pI)

44.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000143)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G76710 AT1G76710 AT1G76710 AT1G76710
fragaria_vesca	FvH4_1g20063 FvH4_2g15231 FvH4_3g04011 FvH4_3g28681 FvH4_4g01411 FvH4_4g10181 FvH4_4g15922 FvH4_4g16651 FvH4_4g16652 FvH4_5g13892 FvH4_5g13893 FvH4_5g20623 FvH4_5g20623 FvH4_5g20623 FvH4_5g20623 FvH4_5g25511 FvH4_6g12551 FvH4_6g12552 FvH4_6g38841 FvH4_7g04391
malus_domestica	MD05G1031300.v1.1 MD05G1031400.v1.1 MD05G1031500.v1.1 MD08G1164400.v1.1 MD10G1032900.v1.1 MD10G1033000.v1.1 MD10G1033100.v1.1
prunus_persica	Prupe.3G240700_v2.0.a1 Prupe.7G144600_v2.0.a1 Prupe.8G038500_v2.0.a1 Prupe.8G038500_v2.0.a1
pyrus_communis	pycom05g02250 pycom05g02260 pycom05g02270 pycom05g02280 pycom08g14160 pycom10g02100 pycom10g02110 pycom10g02130
rosa_chinensis	RchiOBHm_Chr1g0329481 RchiOBHm_Chr1g0329491 RchiOBHm_Chr1g0341531 RchiOBHm_Chr3g0464811 RchiOBHm_Chr3g0494701 RchiOBHm_Chr3g0497501 RchiOBHm_Chr4g0385841 RchiOBHm_Chr5g0061181 RchiOBHm_Chr6g0263001 RchiOBHm_Chr7g0193111 RchiOBHm_Chr7g0206281 RchiOBHm_Chr7g0206311
rosa_laevigata	RLG00000018908 RLG00000028528 RLG00000028803 RLG00000029882 RLG00000029883 RLG00000030361
rosa_multiflora	Rmu_co8196328.1_g000001 Rmu_co8259135.1_g000001 Rmu_co8269185.1_g000001 Rmu_sc0000076.1_g000019 Rmu_sc0000311.1_g000007 Rmu_sc0000429.1_g000038 Rmu_sc0000429.1_g000039 Rmu_sc0000429.1_g000040 Rmu_sc0000511.1_g000005 Rmu_sc0000539.1_g000054 Rmu_sc0000566.1_g000039 Rmu_sc0000805.1_g000032 Rmu_sc0000870.1_g000073 Rmu_sc0000870.1_g000074 Rmu_sc0001010.1_g000018 Rmu_sc0001083.1_g000013 Rmu_sc0001114.1_g000011 Rmu_sc0001702.1_g000027 Rmu_sc0001779.1_g000012 Rmu_sc0002923.1_g000036 Rmu_sc0003242.1_g000011 Rmu_sc0003291.1_g000036 Rmu_sc0003393.1_g000012 Rmu_sc0003872.1_g000016 Rmu_sc0003872.1_g000017 Rmu_sc0003872.1_g000018 Rmu_sc0004084.1_g000020 Rmu_sc0004386.1_g000005 Rmu_sc0004622.1_g000005 Rmu_sc0004742.1_g000021 Rmu_sc0004755.1_g000020 Rmu_sc0004805.1_g000036 Rmu_sc0005065.1_g000006 Rmu_sc0005177.1_g000004 Rmu_sc0006373.1_g000003 Rmu_sc0006373.1_g000004 Rmu_sc0007121.1_g000002 Rmu_sc0007943.1_g000003 Rmu_sc0010368.1_g000006 Rmu_sc0010543.1_g000001 Rmu_sc0012591.1_g000006 Rmu_sc0013504.1_g000009 Rmu_sc0015025.1_g000001 Rmu_sc0016170.1_g000001 Rmu_sc0017156.1_g000001 Rmu_sc0026439.1_g000001
rosa_roxburghii	Rroxscaffold_175G00432280 Rroxscaffold_1G00030190 Rroxscaffold_1G00030880 Rroxscaffold_2G00090520 Rroxscaffold_3G00227940 Rroxscaffold_3G00233400 Rroxscaffold_3G00238500 Rroxscaffold_3G00251650 Rroxscaffold_4G00301570 Rroxscaffold_4G00321040 Rroxscaffold_5G00350880 Rroxscaffold_7G00184400
rosa_rugosa	Rorug01G0080800 Rorug01G0080900 Rorug01G0193900 Rorug02G0275900 Rorug02G0275900 Rorug02G0275900 Rorug02G0305400 Rorug02G0311800 Rorug02G0350400 Rorug02G0381300 Rorug03G0136700 Rorug03G0181900 Rorug03G0268000 Rorug04G0301600 Rorug05G0175100 Rorug05G0250700 Rorug05G0298200 Rorug05G0596000 Rorug06G0029500 Rorug07G0094300 Rorug07G0094300 Rorug07G0095400 Rorug07G0140100
rosa_samantha	Rh1AG099200 Rh1AG190500 Rh1BG078900 Rh1BG079000 Rh1BG079100 Rh1CG084600 Rh1CG084700 Rh1CG095300 Rh1CG175900 Rh1DG103300 Rh1DG150400 Rh2AG079300 Rh2AG272400 Rh2AG464800 Rh2AG507400 Rh2DG078300 Rh2DG078400 Rh3CG206900 Rh3CG295400 Rh3DG206800 Rh3DG356200 Rh4CG071500 Rh4CG179200 Rh4DG064700 Rh5CG362400 Rh7AG212300 Rh7AG226200 Rh7BG222200
rosa_wichuraiana	Rw0G009990 Rw0G011260 Rw0G011270 Rw0G012910 Rw0G013740 Rw1G007740 Rw1G013050 Rw1G014230 Rw2G014270 Rw3G012720 Rw3G028110 Rw4G006630 Rw4G015270 Rw4G016160 Rw4G031380 Rw5G011440 Rw5G029180 Rw5G048360 Rw5G048430 Rw5G048780 Rw6G005250 Rw6G006390 Rw7G002840 Rw7G014080 Rw7G019650 Rw7G032790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	212
AcsI	RAATTY	1 cut(s)	84
AfaI	GTAC	1 cut(s)	95
AfiI	CCNNNNNNNGG	1 cut(s)	254
AgsI	TTSAA	1 cut(s)	133
ApoI	RAATTY	1 cut(s)	84
AsuHPI	GGTGA	1 cut(s)	187
BbsI	GAAGAC	1 cut(s)	60
BccI	CCATC	1 cut(s)	166
BciVI	GTATCC	1 cut(s)	31
BfaI	CTAG	1 cut(s)	123
BfmI	CTRYAG	1 cut(s)	102
BfuI	GTATCC	1 cut(s)	31
BpiI	GAAGAC	1 cut(s)	60
Bsc4I	CCNNNNNNNGG	1 cut(s)	254
Bse1I	ACTGG	1 cut(s)	18
BseGI	GGATG	2 cut(s)	115, 174
BseLI	CCNNNNNNNGG	1 cut(s)	254
BseMII	CTCAG	1 cut(s)	162
BseNI	ACTGG	1 cut(s)	18
BseRI	GAGGAG	1 cut(s)	136
BseYI	CCCAGC	1 cut(s)	164
BslI	CCNNNNNNNGG	1 cut(s)	254
BspCNI	CTCAG	1 cut(s)	161
BspMAI	CTGCAG	1 cut(s)	106
BspQI	GCTCTTC	1 cut(s)	134
BsrI	ACTGG	1 cut(s)	18
Bst4CI	ACNGT	2 cut(s)	93, 324
Bst6I	CTCTTC	1 cut(s)	134
BstDEI	CTNAG	2 cut(s)	31, 148
BstF5I	GGATG	2 cut(s)	115, 174
BstSFI	CTRYAG	1 cut(s)	102
BstV2I	GAAGAC	1 cut(s)	60
BsuI	GTATCC	1 cut(s)	31
BtsCI	GGATG	2 cut(s)	115, 174
BtsIMutI	CAGTG	2 cut(s)	25, 89
Csp6I	GTAC	1 cut(s)	94
CviJI	RGCY	3 cut(s)	115, 127, 137
CviKI_1	RGCY	3 cut(s)	115, 127, 137
CviQI	GTAC	1 cut(s)	94
DdeI	CTNAG	2 cut(s)	31, 148
Eam1104I	CTCTTC	1 cut(s)	134
EarI	CTCTTC	1 cut(s)	134
FaiI	YATR	5 cut(s)	26, 28, 49, 329, 331
FblI	GTMKAC	1 cut(s)	212
FokI	GGATG	2 cut(s)	122, 181
FspBI	CTAG	1 cut(s)	123
GsaI	CCCAGC	1 cut(s)	168
HinfI	GANTC	3 cut(s)	98, 191, 239
HphI	GGTGA	1 cut(s)	187
Hpy166II	GTNNAC	2 cut(s)	142, 213
Hpy188I	TCNGA	3 cut(s)	151, 196, 310
Hpy8I	GTNNAC	2 cut(s)	142, 213
Hpy99I	CGWCG	1 cut(s)	62
HpyAV	CCTTC	1 cut(s)	126
HpyCH4III	ACNGT	2 cut(s)	93, 324
HpyCH4V	TGCA	2 cut(s)	104, 229
HpyF3I	CTNAG	2 cut(s)	31, 148
LguI	GCTCTTC	1 cut(s)	134
LpnPI	CCDG	2 cut(s)	31, 150
MaeI	CTAG	1 cut(s)	123
MboII	GAAGA	2 cut(s)	65, 121
MluCI	AATT	1 cut(s)	84
MnlI	CCTC	6 cut(s)	100, 157, 247, 262, 283, 288
PciSI	GCTCTTC	1 cut(s)	134
PfeI	GAWTC	3 cut(s)	98, 191, 239
PspFI	CCCAGC	1 cut(s)	164
PstI	CTGCAG	1 cut(s)	106
RsaI	GTAC	1 cut(s)	95
RsaNI	GTAC	1 cut(s)	94
SapI	GCTCTTC	1 cut(s)	134
SetI	ASST	2 cut(s)	48, 273
SfcI	CTRYAG	1 cut(s)	102
SgeI	CNNG	7 cut(s)	30, 135, 145, 177, 233, 248, 301
Sse9I	AATT	1 cut(s)	84
SspI	AATATT	1 cut(s)	13
SspMI	CTAG	1 cut(s)	123
TaaI	ACNGT	2 cut(s)	93, 324
TasI	AATT	1 cut(s)	84
TfiI	GAWTC	3 cut(s)	98, 191, 239
TscAI	CASTG	2 cut(s)	25, 96
TspRI	CASTG	2 cut(s)	25, 96
XapI	RAATTY	1 cut(s)	84
XmiI	GTMKAC	1 cut(s)	212
XspI	CTAG	1 cut(s)	123

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.