Rmu_sc0015025.1_g000001

protein FAR1-RELATED SEQUENCE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0015025.1
OG0000143
Physical Location & Seq
Forward (+)
758 .. 1570
813 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0015025.1_g000001.1.cds

Sequence Viewer

Length: 813 bp
atgtcaactagtttgatgaaacccaaggatatgctgactgctgtcaagaaacgggataaagaaaatgtaacaattatgaagacaatatataatgccagaagagtacatcggacgaaggttatggctggaagatcacaaatgcaatgtttgctacataagttaagggaacacaattatattgagcatcacaggagtgaaggtgatatcatcactgacttgttttggtgtcatccttattgtcttcagattttacgtacatttccacatgttcttatcatggactgcacctacaagacaaatagatattgttttcctctctttgagattgtcggggtgacatctactgagaagacctttaatgttgcatttgtttatatgtcaagagaggcggaagacaattacacatgggctttgagtagattgaagactcttttgcgtgatgactgtactccgggtgttattgtgactgatcgagaattagcgctaatgaatagcattagcaaattatttcctggttctcgacatctcctgtgtaaatggcatatcaataagaacgtaatgaaagagtgtaagaaaaagtttgcaacgaaagaagggtgggatgcatttaatggtgcttggaacactgttgttagttctacaactgagggtgagtattggaaaaatctcaaggaattggagtctaaatttagtacatatcctaatgaacttcggtatgtgaagagcaactggttggaccactacaaagaacgatttgtcgttgcatggacagatacttgcatgcacatcggtaccactacttcaaatcggtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE

Protein Analysis

270

Amino Acids

31.85

Weight (kDa)

9.25

Isoelectric Point (pI)

47.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000143)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G76710 AT1G76710 AT1G76710 AT1G76710
fragaria_vesca FvH4_1g20063 FvH4_2g15231 FvH4_3g04011 FvH4_3g28681 FvH4_4g01411 FvH4_4g10181 FvH4_4g15922 FvH4_4g16651 FvH4_4g16652 FvH4_5g13892 FvH4_5g13893 FvH4_5g20623 FvH4_5g20623 FvH4_5g20623 FvH4_5g20623 FvH4_5g25511 FvH4_6g12551 FvH4_6g12552 FvH4_6g38841 FvH4_7g04391
malus_domestica MD05G1031300.v1.1 MD05G1031400.v1.1 MD05G1031500.v1.1 MD08G1164400.v1.1 MD10G1032900.v1.1 MD10G1033000.v1.1 MD10G1033100.v1.1
prunus_persica Prupe.3G240700_v2.0.a1 Prupe.7G144600_v2.0.a1 Prupe.8G038500_v2.0.a1 Prupe.8G038500_v2.0.a1
pyrus_communis pycom05g02250 pycom05g02260 pycom05g02270 pycom05g02280 pycom08g14160 pycom10g02100 pycom10g02110 pycom10g02130
rosa_chinensis RchiOBHm_Chr1g0329481 RchiOBHm_Chr1g0329491 RchiOBHm_Chr1g0341531 RchiOBHm_Chr3g0464811 RchiOBHm_Chr3g0494701 RchiOBHm_Chr3g0497501 RchiOBHm_Chr4g0385841 RchiOBHm_Chr5g0061181 RchiOBHm_Chr6g0263001 RchiOBHm_Chr7g0193111 RchiOBHm_Chr7g0206281 RchiOBHm_Chr7g0206311
rosa_laevigata RLG00000018908 RLG00000028528 RLG00000028803 RLG00000029882 RLG00000029883 RLG00000030361
rosa_multiflora Rmu_co8196328.1_g000001 Rmu_co8259135.1_g000001 Rmu_co8269185.1_g000001 Rmu_sc0000076.1_g000019 Rmu_sc0000311.1_g000007 Rmu_sc0000429.1_g000038 Rmu_sc0000429.1_g000039 Rmu_sc0000429.1_g000040 Rmu_sc0000511.1_g000005 Rmu_sc0000539.1_g000054 Rmu_sc0000566.1_g000039 Rmu_sc0000805.1_g000032 Rmu_sc0000870.1_g000073 Rmu_sc0000870.1_g000074 Rmu_sc0001010.1_g000018 Rmu_sc0001083.1_g000013 Rmu_sc0001114.1_g000011 Rmu_sc0001702.1_g000027 Rmu_sc0001779.1_g000012 Rmu_sc0002923.1_g000036 Rmu_sc0003242.1_g000011 Rmu_sc0003291.1_g000036 Rmu_sc0003393.1_g000012 Rmu_sc0003872.1_g000016 Rmu_sc0003872.1_g000017 Rmu_sc0003872.1_g000018 Rmu_sc0004084.1_g000020 Rmu_sc0004386.1_g000005 Rmu_sc0004622.1_g000005 Rmu_sc0004742.1_g000021 Rmu_sc0004755.1_g000020 Rmu_sc0004805.1_g000036 Rmu_sc0005065.1_g000006 Rmu_sc0005177.1_g000004 Rmu_sc0006373.1_g000003 Rmu_sc0006373.1_g000004 Rmu_sc0007121.1_g000002 Rmu_sc0007943.1_g000003 Rmu_sc0010368.1_g000006 Rmu_sc0010543.1_g000001 Rmu_sc0012591.1_g000006 Rmu_sc0013504.1_g000009 Rmu_sc0015025.1_g000001 Rmu_sc0016170.1_g000001 Rmu_sc0017156.1_g000001 Rmu_sc0026439.1_g000001
rosa_roxburghii Rroxscaffold_175G00432280 Rroxscaffold_1G00030190 Rroxscaffold_1G00030880 Rroxscaffold_2G00090520 Rroxscaffold_3G00227940 Rroxscaffold_3G00233400 Rroxscaffold_3G00238500 Rroxscaffold_3G00251650 Rroxscaffold_4G00301570 Rroxscaffold_4G00321040 Rroxscaffold_5G00350880 Rroxscaffold_7G00184400
rosa_rugosa Rorug01G0080800 Rorug01G0080900 Rorug01G0193900 Rorug02G0275900 Rorug02G0275900 Rorug02G0275900 Rorug02G0305400 Rorug02G0311800 Rorug02G0350400 Rorug02G0381300 Rorug03G0136700 Rorug03G0181900 Rorug03G0268000 Rorug04G0301600 Rorug05G0175100 Rorug05G0250700 Rorug05G0298200 Rorug05G0596000 Rorug06G0029500 Rorug07G0094300 Rorug07G0094300 Rorug07G0095400 Rorug07G0140100
rosa_samantha Rh1AG099200 Rh1AG190500 Rh1BG078900 Rh1BG079000 Rh1BG079100 Rh1CG084600 Rh1CG084700 Rh1CG095300 Rh1CG175900 Rh1DG103300 Rh1DG150400 Rh2AG079300 Rh2AG272400 Rh2AG464800 Rh2AG507400 Rh2DG078300 Rh2DG078400 Rh3CG206900 Rh3CG295400 Rh3DG206800 Rh3DG356200 Rh4CG071500 Rh4CG179200 Rh4DG064700 Rh5CG362400 Rh7AG212300 Rh7AG226200 Rh7BG222200
rosa_wichuraiana Rw0G009990 Rw0G011260 Rw0G011270 Rw0G012910 Rw0G013740 Rw1G007740 Rw1G013050 Rw1G014230 Rw2G014270 Rw3G012720 Rw3G028110 Rw4G006630 Rw4G015270 Rw4G016160 Rw4G031380 Rw5G011440 Rw5G029180 Rw5G048360 Rw5G048430 Rw5G048780 Rw6G005250 Rw6G006390 Rw7G002840 Rw7G014080 Rw7G019650 Rw7G032790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 791
AccB1I GGYRCC 1 cut(s) 791
AciI CCGC 1 cut(s) 389
AcsI RAATTY 1 cut(s) 686
AcuI CTGAAG 1 cut(s) 227
AfaI GTAC 5 cut(s) 105, 256, 448, 694, 793
AfeI AGCGCT 1 cut(s) 483
AflIII ACRYGT 1 cut(s) 265
AgsI TTSAA 2 cut(s) 424, 804
AhlI ACTAGT 1 cut(s) 8
AjnI CCWGG 1 cut(s) 511
AleI CACNNNNGTG 1 cut(s) 192
Aor51HI AGCGCT 1 cut(s) 483
ApoI RAATTY 1 cut(s) 686
Asp718I GGTACC 1 cut(s) 791
AspLEI GCGC 1 cut(s) 484
AspS9I GGNCC 1 cut(s) 736
AsuC2I CCSGG 1 cut(s) 453
AsuHPI GGTGA 3 cut(s) 212, 346, 662
AvaII GGWCC 1 cut(s) 736
BaeI ACNNNNGTAYC 2 cut(s) 775, 808
BanI GGYRCC 1 cut(s) 791
BarI GAAGNNNNNNTAC 1 cut(s) 784
BbsI GAAGAC 5 cut(s) 86, 233, 356, 399, 431
BcgI CGANNNNNNTGC 2 cut(s) 769, 803
BciT130I CCWGG 1 cut(s) 513
BcnI CCSGG 1 cut(s) 453
BcuI ACTAGT 1 cut(s) 8
BfaI CTAG 1 cut(s) 9
BfoI RGCGCY 1 cut(s) 485
Bme1390I CCNGG 2 cut(s) 453, 513
Bme18I GGWCC 1 cut(s) 736
BmgT120I GGNCC 1 cut(s) 736
BmiI GGNNCC 1 cut(s) 793
BmrFI CCNGG 2 cut(s) 453, 513
BmsI GCATC 2 cut(s) 193, 592
BoxI GACNNNNGTC 1 cut(s) 41
BpiI GAAGAC 5 cut(s) 86, 233, 356, 399, 431
BpuEI CTTGAG 1 cut(s) 653
BpuMI CCSGG 1 cut(s) 453
BsaAI YACGTR 1 cut(s) 254
BsaJI CCNNGG 1 cut(s) 24
BsaXI ACNNNNNCTCC 2 cut(s) 184, 214
Bse1I ACTGG 1 cut(s) 734
Bse3DI GCAATG 1 cut(s) 149
BseBI CCWGG 1 cut(s) 513
BseDI CCNNGG 1 cut(s) 24
BseGI GGATG 2 cut(s) 229, 607
BseMI GCAATG 1 cut(s) 149
BseMII CTCAG 2 cut(s) 336, 636
BseNI ACTGG 1 cut(s) 734
BsgI GTGCAG 1 cut(s) 268
BshNI GGYRCC 1 cut(s) 791
BsiSI CCGG 1 cut(s) 452
Bsp143I GATC 2 cut(s) 131, 469
BspACI CCGC 1 cut(s) 389
BspCNI CTCAG 2 cut(s) 337, 637
BspLI GGNNCC 1 cut(s) 793
BspQI GCTCTTC 1 cut(s) 716
BspT107I GGYRCC 1 cut(s) 791
BsrDI GCAATG 1 cut(s) 149
BsrI ACTGG 1 cut(s) 734
BssECI CCNNGG 1 cut(s) 24
BssMI GATC 2 cut(s) 131, 469
BssT1I CCWWGG 1 cut(s) 24
Bst2UI CCWGG 1 cut(s) 513
Bst4CI ACNGT 2 cut(s) 446, 628
Bst6I CTCTTC 2 cut(s) 94, 716
BstAPI GCANNNNNTGC 1 cut(s) 148
BstBAI YACGTR 1 cut(s) 254
BstC8I GCNNGC 1 cut(s) 782
BstDEI CTNAG 2 cut(s) 345, 645
BstF5I GGATG 2 cut(s) 229, 607
BstH2I RGCGCY 1 cut(s) 485
BstHHI GCGC 1 cut(s) 484
BstKTI GATC 2 cut(s) 134, 472
BstMBI GATC 2 cut(s) 131, 469
BstMWI GCNNNNNNNGC 1 cut(s) 148
BstNI CCWGG 1 cut(s) 513
BstNSI RCATGY 2 cut(s) 269, 784
BstPAI GACNNNNGTC 1 cut(s) 41
BstSCI CCNGG 2 cut(s) 451, 511
BstSNI TACGTA 1 cut(s) 254
BstV2I GAAGAC 5 cut(s) 86, 233, 356, 399, 431
BtsCI GGATG 2 cut(s) 229, 607
BtsIMutI CAGTG 2 cut(s) 210, 624
Cac8I GCNNGC 1 cut(s) 782
CfoI GCGC 1 cut(s) 484
Cfr13I GGNCC 1 cut(s) 736
Csp6I GTAC 5 cut(s) 104, 255, 447, 693, 792
CviAII CATG 5 cut(s) 266, 277, 405, 765, 781
CviJI RGCY 2 cut(s) 125, 410
CviKI_1 RGCY 2 cut(s) 125, 410
CviQI GTAC 5 cut(s) 104, 255, 447, 693, 792
DdeI CTNAG 2 cut(s) 345, 645
DpnI GATC 2 cut(s) 133, 471
DpnII GATC 2 cut(s) 131, 469
Eam1104I CTCTTC 2 cut(s) 94, 716
EarI CTCTTC 2 cut(s) 94, 716
EciI GGCGGA 1 cut(s) 404
Eco105I TACGTA 1 cut(s) 254
Eco130I CCWWGG 1 cut(s) 24
Eco32I GATATC 1 cut(s) 205
Eco47I GGWCC 1 cut(s) 736
Eco47III AGCGCT 1 cut(s) 483
Eco57I CTGAAG 1 cut(s) 227
EcoRII CCWGG 1 cut(s) 511
EcoRV GATATC 1 cut(s) 205
EcoT14I CCWWGG 1 cut(s) 24
EcoT22I ATGCAT 1 cut(s) 607
ErhI CCWWGG 1 cut(s) 24
FaeI CATG 5 cut(s) 269, 280, 408, 768, 784
FatI CATG 5 cut(s) 265, 276, 404, 764, 780
FokI GGATG 2 cut(s) 216, 614
FspBI CTAG 1 cut(s) 9
GlaI GCGC 1 cut(s) 483
HaeII RGCGCY 1 cut(s) 485
HapII CCGG 1 cut(s) 452
HhaI GCGC 1 cut(s) 484
Hin1II CATG 5 cut(s) 269, 280, 408, 768, 784
Hin6I GCGC 1 cut(s) 482
HinP1I GCGC 1 cut(s) 482
HincII GTYRAC 1 cut(s) 6
HindII GTYRAC 1 cut(s) 6
HinfI GANTC 2 cut(s) 427, 680
HpaII CCGG 1 cut(s) 452
HphI GGTGA 3 cut(s) 212, 346, 662
Hpy166II GTNNAC 1 cut(s) 6
Hpy188I TCNGA 2 cut(s) 111, 246
Hpy188III TCNNGA 4 cut(s) 46, 381, 473, 519
Hpy8I GTNNAC 1 cut(s) 6
HpyAV CCTTC 3 cut(s) 109, 191, 587
HpyCH4III ACNGT 2 cut(s) 446, 628
HpyCH4IV ACGT 2 cut(s) 253, 555
HpyCH4V TGCA 8 cut(s) 142, 285, 365, 584, 605, 764, 780, 784
HpyF10VI GCNNNNNNNGC 1 cut(s) 148
HpyF3I CTNAG 2 cut(s) 345, 645
HpySE526I ACGT 2 cut(s) 253, 555
Hsp92II CATG 5 cut(s) 269, 280, 408, 768, 784
HspAI GCGC 1 cut(s) 482
KpnI GGTACC 1 cut(s) 795
Kzo9I GATC 2 cut(s) 131, 469
LguI GCTCTTC 1 cut(s) 716
LpnPI CCDG 8 cut(s) 109, 111, 175, 465, 498, 525, 542, 715
LweI GCATC 2 cut(s) 193, 592
MaeI CTAG 1 cut(s) 9
MaeII ACGT 2 cut(s) 253, 555
MaeIII GTNAC 3 cut(s) 67, 334, 463
MalI GATC 2 cut(s) 133, 471
MboI GATC 2 cut(s) 131, 469
MboII GAAGA 8 cut(s) 91, 111, 141, 233, 361, 404, 436, 733
MluCI AATT 7 cut(s) 72, 172, 397, 476, 503, 674, 686
MlyI GAGTC 2 cut(s) 421, 689
MmeI TCCRAC 1 cut(s) 714
MnlI CCTC 3 cut(s) 324, 379, 640
Mph1103I ATGCAT 1 cut(s) 607
MseI TTAA 3 cut(s) 161, 357, 609
MslI CAYNNNNRTG 1 cut(s) 192
MspI CCGG 1 cut(s) 452
MspR9I CCNGG 2 cut(s) 453, 513
MvaI CCWGG 1 cut(s) 513
MwoI GCNNNNNNNGC 1 cut(s) 148
NciI CCSGG 1 cut(s) 453
NdeII GATC 2 cut(s) 131, 469
NlaIII CATG 5 cut(s) 269, 280, 408, 768, 784
NlaIV GGNNCC 1 cut(s) 793
NmuCI GTSAC 2 cut(s) 334, 463
NsiI ATGCAT 1 cut(s) 607
NspI RCATGY 2 cut(s) 269, 784
OliI CACNNNNGTG 1 cut(s) 192
PaeI GCATGC 1 cut(s) 784
PciI ACATGT 1 cut(s) 265
PciSI GCTCTTC 1 cut(s) 716
PleI GAGTC 2 cut(s) 421, 688
PpsI GAGTC 2 cut(s) 421, 688
Ppu21I YACGTR 1 cut(s) 254
PscI ACATGT 1 cut(s) 265
PshAI GACNNNNGTC 1 cut(s) 41
Psp6I CCWGG 1 cut(s) 511
PspGI CCWGG 1 cut(s) 511
PspN4I GGNNCC 1 cut(s) 793
PspPI GGNCC 1 cut(s) 736
RsaI GTAC 5 cut(s) 105, 256, 448, 694, 793
RsaNI GTAC 5 cut(s) 104, 255, 447, 693, 792
RseI CAYNNNNRTG 1 cut(s) 192
SapI GCTCTTC 1 cut(s) 716
SaqAI TTAA 3 cut(s) 161, 357, 609
Sau3AI GATC 2 cut(s) 131, 469
Sau96I GGNCC 1 cut(s) 736
SchI GAGTC 2 cut(s) 421, 689
ScrFI CCNGG 2 cut(s) 453, 513
SetI ASST 6 cut(s) 120, 202, 256, 290, 356, 558
SfaNI GCATC 2 cut(s) 193, 592
SinI GGWCC 1 cut(s) 736
SmiMI CAYNNNNRTG 1 cut(s) 192
SmlI CTYRAG 1 cut(s) 668
SmoI CTYRAG 1 cut(s) 668
SnaBI TACGTA 1 cut(s) 254
SpeI ACTAGT 1 cut(s) 8
SphI GCATGC 1 cut(s) 784
Sse9I AATT 7 cut(s) 72, 172, 397, 476, 503, 674, 686
SsiI CCGC 1 cut(s) 389
SspMI CTAG 1 cut(s) 9
StyD4I CCNGG 2 cut(s) 451, 511
StyI CCWWGG 1 cut(s) 24
TaaI ACNGT 2 cut(s) 446, 628
TaiI ACGT 2 cut(s) 256, 558
TaqI TCGA 2 cut(s) 472, 520
TasI AATT 7 cut(s) 72, 172, 397, 476, 503, 674, 686
TatI WGTACW 3 cut(s) 103, 446, 692
Tru1I TTAA 3 cut(s) 161, 357, 609
Tru9I TTAA 3 cut(s) 161, 357, 609
TscAI CASTG 2 cut(s) 217, 631
TseFI GTSAC 2 cut(s) 334, 463
Tsp45I GTSAC 2 cut(s) 334, 463
TspDTI ATGAA 5 cut(s) 32, 92, 503, 575, 720
TspRI CASTG 2 cut(s) 217, 631
VpaK11BI GGWCC 1 cut(s) 736
XapI RAATTY 1 cut(s) 686
XceI RCATGY 2 cut(s) 269, 784
XspI CTAG 1 cut(s) 9
Zsp2I ATGCAT 1 cut(s) 607
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.