FvH4_2g15231

protein FAR1-RELATED SEQUENCE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0000143
Physical Location & Seq
Reverse (-)
13403255 .. 13405487
2233 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g15231.t1

Sequence Viewer

Length: 933 bp
ATGGAAGAAGAGTTGCAGCTTAATCTTTCGTCTAATATCATAGAAGGTCTCACTGTCGTTGGGAATGAAGAAATGTTTGCTGTTTCTGATGAATTTTTCTCACTATCAACAAAAGGTTATGAAAATCGAGATGACCTCATTAGAGATGTTCGTAATCTTGGGGTTGTGCAAGGTGTTACTTCTAGGGCAGAAGGTGCACATGCAACCTTAAAGAGATATCTTCAAGTTTCAACGGGTGGTCTTCGTGAAGTGAAGGAAAATATTTGTCTTGCTATTGAAAACCAATTTCCAGAAATTAAAACTCAATTTGCAAGTGAAAAGATTCGTGTTCCTCAAAAGCTTTGCATCCTCTTCTTTAAAGAGACAATGAATAAGGTATCATTCCATGCTTTGTATGAGCTACTAAAACAATATTTGCTGGCAAATACCAAAGACTATTCATCTCAATGGAAAGGCCAATTTTTCAAAACCATGGTTCTTCCTTGTGTGCACATGATCAAGGAGATGAATATTGAAGTGTGTTCTCTAAATCAGATTCATATGCAGTGGAGGATTGACACAAGATCTTTCACTAATGATCAACATGCAAGCTTGGATCATGAAGATCCTTTCACTAGTCTCTTGTCTGAGATTAAAGAGAAATATGAAAAGCAGCCGCTAATGCAAAAAGAGAATACCATAAGGCAGCTTTCTCATATTCTTGGTGCATCTTGCCCCTTGCTTTTTGAACCTATTATTCAGCCTCATAAAGGTCGTCCGGTAGAATCAACTAATAGAAAGGAAACTTGTTCTACAAAGAGGGAACCCTCATACTTTGAGGTAGTGGATAAGACACCTCGGAAATGTAGTGGTTGCGGTAATCCTGGCCATTATCGTAACAAGTGTCCATCAATCAACAAGTCTACTACACCATATGTGAGGAATAATGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE

Protein Analysis

311

Amino Acids

35.63

Weight (kDa)

8.01

Isoelectric Point (pI)

42.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000143)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G76710 AT1G76710 AT1G76710 AT1G76710
fragaria_vesca FvH4_1g20063 FvH4_2g15231 FvH4_3g04011 FvH4_3g28681 FvH4_4g01411 FvH4_4g10181 FvH4_4g15922 FvH4_4g16651 FvH4_4g16652 FvH4_5g13892 FvH4_5g13893 FvH4_5g20623 FvH4_5g20623 FvH4_5g20623 FvH4_5g20623 FvH4_5g25511 FvH4_6g12551 FvH4_6g12552 FvH4_6g38841 FvH4_7g04391
malus_domestica MD05G1031300.v1.1 MD05G1031400.v1.1 MD05G1031500.v1.1 MD08G1164400.v1.1 MD10G1032900.v1.1 MD10G1033000.v1.1 MD10G1033100.v1.1
prunus_persica Prupe.3G240700_v2.0.a1 Prupe.7G144600_v2.0.a1 Prupe.8G038500_v2.0.a1 Prupe.8G038500_v2.0.a1
pyrus_communis pycom05g02250 pycom05g02260 pycom05g02270 pycom05g02280 pycom08g14160 pycom10g02100 pycom10g02110 pycom10g02130
rosa_chinensis RchiOBHm_Chr1g0329481 RchiOBHm_Chr1g0329491 RchiOBHm_Chr1g0341531 RchiOBHm_Chr3g0464811 RchiOBHm_Chr3g0494701 RchiOBHm_Chr3g0497501 RchiOBHm_Chr4g0385841 RchiOBHm_Chr5g0061181 RchiOBHm_Chr6g0263001 RchiOBHm_Chr7g0193111 RchiOBHm_Chr7g0206281 RchiOBHm_Chr7g0206311
rosa_laevigata RLG00000018908 RLG00000028528 RLG00000028803 RLG00000029882 RLG00000029883 RLG00000030361
rosa_multiflora Rmu_co8196328.1_g000001 Rmu_co8259135.1_g000001 Rmu_co8269185.1_g000001 Rmu_sc0000076.1_g000019 Rmu_sc0000311.1_g000007 Rmu_sc0000429.1_g000038 Rmu_sc0000429.1_g000039 Rmu_sc0000429.1_g000040 Rmu_sc0000511.1_g000005 Rmu_sc0000539.1_g000054 Rmu_sc0000566.1_g000039 Rmu_sc0000805.1_g000032 Rmu_sc0000870.1_g000073 Rmu_sc0000870.1_g000074 Rmu_sc0001010.1_g000018 Rmu_sc0001083.1_g000013 Rmu_sc0001114.1_g000011 Rmu_sc0001702.1_g000027 Rmu_sc0001779.1_g000012 Rmu_sc0002923.1_g000036 Rmu_sc0003242.1_g000011 Rmu_sc0003291.1_g000036 Rmu_sc0003393.1_g000012 Rmu_sc0003872.1_g000016 Rmu_sc0003872.1_g000017 Rmu_sc0003872.1_g000018 Rmu_sc0004084.1_g000020 Rmu_sc0004386.1_g000005 Rmu_sc0004622.1_g000005 Rmu_sc0004742.1_g000021 Rmu_sc0004755.1_g000020 Rmu_sc0004805.1_g000036 Rmu_sc0005065.1_g000006 Rmu_sc0005177.1_g000004 Rmu_sc0006373.1_g000003 Rmu_sc0006373.1_g000004 Rmu_sc0007121.1_g000002 Rmu_sc0007943.1_g000003 Rmu_sc0010368.1_g000006 Rmu_sc0010543.1_g000001 Rmu_sc0012591.1_g000006 Rmu_sc0013504.1_g000009 Rmu_sc0015025.1_g000001 Rmu_sc0016170.1_g000001 Rmu_sc0017156.1_g000001 Rmu_sc0026439.1_g000001
rosa_roxburghii Rroxscaffold_175G00432280 Rroxscaffold_1G00030190 Rroxscaffold_1G00030880 Rroxscaffold_2G00090520 Rroxscaffold_3G00227940 Rroxscaffold_3G00233400 Rroxscaffold_3G00238500 Rroxscaffold_3G00251650 Rroxscaffold_4G00301570 Rroxscaffold_4G00321040 Rroxscaffold_5G00350880 Rroxscaffold_7G00184400
rosa_rugosa Rorug01G0080800 Rorug01G0080900 Rorug01G0193900 Rorug02G0275900 Rorug02G0275900 Rorug02G0275900 Rorug02G0305400 Rorug02G0311800 Rorug02G0350400 Rorug02G0381300 Rorug03G0136700 Rorug03G0181900 Rorug03G0268000 Rorug04G0301600 Rorug05G0175100 Rorug05G0250700 Rorug05G0298200 Rorug05G0596000 Rorug06G0029500 Rorug07G0094300 Rorug07G0094300 Rorug07G0095400 Rorug07G0140100
rosa_samantha Rh1AG099200 Rh1AG190500 Rh1BG078900 Rh1BG079000 Rh1BG079100 Rh1CG084600 Rh1CG084700 Rh1CG095300 Rh1CG175900 Rh1DG103300 Rh1DG150400 Rh2AG079300 Rh2AG272400 Rh2AG464800 Rh2AG507400 Rh2DG078300 Rh2DG078400 Rh3CG206900 Rh3CG295400 Rh3DG206800 Rh3DG356200 Rh4CG071500 Rh4CG179200 Rh4DG064700 Rh5CG362400 Rh7AG212300 Rh7AG226200 Rh7BG222200
rosa_wichuraiana Rw0G009990 Rw0G011260 Rw0G011270 Rw0G012910 Rw0G013740 Rw1G007740 Rw1G013050 Rw1G014230 Rw2G014270 Rw3G012720 Rw3G028110 Rw4G006630 Rw4G015270 Rw4G016160 Rw4G031380 Rw5G011440 Rw5G029180 Rw5G048360 Rw5G048430 Rw5G048780 Rw6G005250 Rw6G006390 Rw7G002840 Rw7G014080 Rw7G019650 Rw7G032790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 902
AciI CCGC 2 cut(s) 656, 855
AclWI GGATC 2 cut(s) 599, 603
AcoI YGGCCR 1 cut(s) 865
AcsI RAATTY 1 cut(s) 92
AfiI CCNNNNNNNGG 1 cut(s) 749
AgsI TTSAA 6 cut(s) 224, 231, 278, 466, 515, 728
AhlI ACTAGT 1 cut(s) 614
AjnI CCWGG 1 cut(s) 862
AluBI AGCT 5 cut(s) 19, 340, 400, 591, 688
AluI AGCT 5 cut(s) 19, 340, 400, 591, 688
Alw21I GWGCWC 2 cut(s) 199, 492
Alw26I GTCTC 3 cut(s) 53, 356, 623
Alw44I GTGCAC 2 cut(s) 195, 488
AlwI GGATC 2 cut(s) 599, 603
AoxI GGCC 2 cut(s) 454, 865
ApaLI GTGCAC 2 cut(s) 195, 488
ApeKI GCWGC 3 cut(s) 16, 652, 685
ApoI RAATTY 1 cut(s) 92
Asp700I GAANNNNTTC 1 cut(s) 321
BaeGI GKGCMC 2 cut(s) 199, 492
BalI TGGCCA 1 cut(s) 867
BbsI GAAGAC 1 cut(s) 233
Bbv12I GWGCWC 2 cut(s) 199, 492
BbvI GCAGC 3 cut(s) 28, 664, 697
BccI CCATC 1 cut(s) 895
BciT130I CCWGG 1 cut(s) 864
BclI TGATCA 2 cut(s) 495, 577
BcoDI GTCTC 3 cut(s) 53, 356, 623
BcuI ACTAGT 1 cut(s) 614
BfaI CTAG 2 cut(s) 183, 615
BglII AGATCT 1 cut(s) 563
BisI GCNGC 4 cut(s) 17, 653, 656, 686
BlsI GCNGC 4 cut(s) 18, 654, 657, 687
Bme1390I CCNGG 1 cut(s) 864
BmiI GGNNCC 1 cut(s) 804
BmrFI CCNGG 1 cut(s) 864
BmsI GCATC 2 cut(s) 354, 716
BpiI GAAGAC 1 cut(s) 233
BplI GAGNNNNNCTC 2 cut(s) 120, 152
BsaI GGTCTC 1 cut(s) 53
BsaJI CCNNGG 2 cut(s) 471, 836
BsaWI WCCGGW 1 cut(s) 757
Bsc4I CCNNNNNNNGG 1 cut(s) 749
BseBI CCWGG 1 cut(s) 864
BseDI CCNNGG 2 cut(s) 471, 836
BseGI GGATG 1 cut(s) 345
BseLI CCNNNNNNNGG 1 cut(s) 749
BseMII CTCAG 1 cut(s) 618
BseSI GKGCMC 2 cut(s) 199, 492
BseXI GCAGC 3 cut(s) 28, 664, 697
BshFI GGCC 2 cut(s) 456, 867
BsiHKAI GWGCWC 2 cut(s) 199, 492
BsiSI CCGG 1 cut(s) 758
BslI CCNNNNNNNGG 1 cut(s) 749
BsmAI GTCTC 3 cut(s) 53, 356, 623
BsnI GGCC 2 cut(s) 456, 867
Bso31I GGTCTC 1 cut(s) 53
Bsp1286I GDGCHC 2 cut(s) 199, 492
Bsp143I GATC 5 cut(s) 495, 563, 577, 595, 604
Bsp19I CCATGG 1 cut(s) 471
BspACI CCGC 2 cut(s) 656, 855
BspANI GGCC 2 cut(s) 456, 867
BspCNI CTCAG 1 cut(s) 619
BspHI TCATGA 1 cut(s) 598
BspLI GGNNCC 1 cut(s) 804
BspPI GGATC 2 cut(s) 599, 603
BspTNI GGTCTC 1 cut(s) 53
BssECI CCNNGG 2 cut(s) 471, 836
BssMI GATC 5 cut(s) 495, 563, 577, 595, 604
BssT1I CCWWGG 1 cut(s) 471
Bst2UI CCWGG 1 cut(s) 864
Bst4CI ACNGT 1 cut(s) 55
Bst6I CTCTTC 2 cut(s) 3, 356
BstAPI GCANNNNNTGC 1 cut(s) 194
BstC8I GCNNGC 2 cut(s) 420, 589
BstDEI CTNAG 2 cut(s) 627, 930
BstDSI CCRYGG 1 cut(s) 471
BstENI CCTNNNNNAGG 1 cut(s) 747
BstF5I GGATG 1 cut(s) 345
BstKTI GATC 5 cut(s) 498, 566, 580, 598, 607
BstMAI GTCTC 3 cut(s) 53, 356, 623
BstMBI GATC 5 cut(s) 495, 563, 577, 595, 604
BstMWI GCNNNNNNNGC 2 cut(s) 194, 661
BstNI CCWGG 1 cut(s) 864
BstNSI RCATGY 2 cut(s) 203, 587
BstSCI CCNGG 1 cut(s) 862
BstSLI GKGCMC 2 cut(s) 199, 492
BstV1I GCAGC 3 cut(s) 28, 664, 697
BstV2I GAAGAC 1 cut(s) 233
BstX2I RGATCY 2 cut(s) 563, 604
BstYI RGATCY 2 cut(s) 563, 604
BsuRI GGCC 2 cut(s) 456, 867
BtgI CCRYGG 1 cut(s) 471
BtsCI GGATG 1 cut(s) 345
BtsI GCAGTG 1 cut(s) 551
BtsIMutI CAGTG 2 cut(s) 51, 551
Cac8I GCNNGC 2 cut(s) 420, 589
CciI TCATGA 1 cut(s) 598
CviAII CATG 6 cut(s) 200, 386, 472, 493, 584, 599
CviJI RGCY 9 cut(s) 19, 340, 400, 456, 591, 655, 688, 742, 867
CviKI_1 RGCY 9 cut(s) 19, 340, 400, 456, 591, 655, 688, 742, 867
DdeI CTNAG 2 cut(s) 627, 930
DpnI GATC 5 cut(s) 497, 565, 579, 597, 606
DpnII GATC 5 cut(s) 495, 563, 577, 595, 604
DraI TTTAAA 1 cut(s) 358
EaeI YGGCCR 1 cut(s) 865
Eam1104I CTCTTC 2 cut(s) 3, 356
EarI CTCTTC 2 cut(s) 3, 356
Eco130I CCWWGG 1 cut(s) 471
Eco31I GGTCTC 1 cut(s) 53
Eco32I GATATC 1 cut(s) 218
EcoNI CCTNNNNNAGG 1 cut(s) 747
EcoRII CCWGG 1 cut(s) 862
EcoRV GATATC 1 cut(s) 218
EcoT14I CCWWGG 1 cut(s) 471
ErhI CCWWGG 1 cut(s) 471
FaeI CATG 6 cut(s) 203, 389, 475, 496, 587, 602
FatI CATG 6 cut(s) 199, 385, 471, 492, 583, 598
FauNDI CATATG 2 cut(s) 540, 913
FbaI TGATCA 2 cut(s) 495, 577
FblI GTMKAC 1 cut(s) 902
Fnu4HI GCNGC 4 cut(s) 17, 653, 656, 686
FokI GGATG 1 cut(s) 332
Fsp4HI GCNGC 4 cut(s) 17, 653, 656, 686
FspBI CTAG 2 cut(s) 183, 615
GluI GCNGC 4 cut(s) 17, 653, 656, 686
HaeIII GGCC 2 cut(s) 456, 867
HapII CCGG 1 cut(s) 758
Hin1II CATG 6 cut(s) 203, 389, 475, 496, 587, 602
HindIII AAGCTT 2 cut(s) 338, 589
HinfI GANTC 3 cut(s) 322, 535, 764
HpaII CCGG 1 cut(s) 758
Hpy166II GTNNAC 3 cut(s) 197, 490, 903
Hpy188I TCNGA 4 cut(s) 88, 534, 628, 840
Hpy188III TCNNGA 4 cut(s) 128, 245, 290, 599
Hpy8I GTNNAC 3 cut(s) 197, 490, 903
HpyAV CCTTC 3 cut(s) 38, 185, 247
HpyCH4III ACNGT 1 cut(s) 55
HpyF10VI GCNNNNNNNGC 2 cut(s) 194, 661
HpyF3I CTNAG 2 cut(s) 627, 930
Hsp92II CATG 6 cut(s) 203, 389, 475, 496, 587, 602
Ksp22I TGATCA 2 cut(s) 495, 577
Kzo9I GATC 5 cut(s) 495, 563, 577, 595, 604
LpnPI CCDG 5 cut(s) 303, 404, 771, 849, 876
Lsp1109I GCAGC 3 cut(s) 28, 664, 697
LweI GCATC 2 cut(s) 354, 716
MaeI CTAG 2 cut(s) 183, 615
MaeIII GTNAC 2 cut(s) 175, 875
MalI GATC 5 cut(s) 497, 565, 579, 597, 606
MboI GATC 5 cut(s) 495, 563, 577, 595, 604
MboII GAAGA 8 cut(s) 17, 20, 80, 212, 233, 343, 470, 614
MflI RGATCY 2 cut(s) 563, 604
MhlI GDGCHC 2 cut(s) 199, 492
MlsI TGGCCA 1 cut(s) 867
MluCI AATT 5 cut(s) 92, 284, 294, 305, 458
MluNI TGGCCA 1 cut(s) 867
Mox20I TGGCCA 1 cut(s) 867
MroXI GAANNNNTTC 1 cut(s) 321
MscI TGGCCA 1 cut(s) 867
MseI TTAA 5 cut(s) 21, 209, 297, 357, 633
MslI CAYNNNNRTG 1 cut(s) 445
Msp20I TGGCCA 1 cut(s) 867
MspI CCGG 1 cut(s) 758
MspR9I CCNGG 1 cut(s) 864
MvaI CCWGG 1 cut(s) 864
MwoI GCNNNNNNNGC 2 cut(s) 194, 661
NcoI CCATGG 1 cut(s) 471
NdeI CATATG 2 cut(s) 540, 913
NdeII GATC 5 cut(s) 495, 563, 577, 595, 604
NlaIII CATG 6 cut(s) 203, 389, 475, 496, 587, 602
NlaIV GGNNCC 1 cut(s) 804
NspI RCATGY 2 cut(s) 203, 587
PagI TCATGA 1 cut(s) 598
PdmI GAANNNNTTC 1 cut(s) 321
PfeI GAWTC 3 cut(s) 322, 535, 764
PkrI GCNGC 4 cut(s) 18, 654, 657, 687
Psp6I CCWGG 1 cut(s) 862
PspGI CCWGG 1 cut(s) 862
PspN4I GGNNCC 1 cut(s) 804
PsuI RGATCY 2 cut(s) 563, 604
RseI CAYNNNNRTG 1 cut(s) 445
SaqAI TTAA 5 cut(s) 21, 209, 297, 357, 633
SatI GCNGC 4 cut(s) 17, 653, 656, 686
Sau3AI GATC 5 cut(s) 495, 563, 577, 595, 604
ScrFI CCNGG 1 cut(s) 864
SduI GDGCHC 2 cut(s) 199, 492
SfaNI GCATC 2 cut(s) 354, 716
SmiMI CAYNNNNRTG 1 cut(s) 445
SpeI ACTAGT 1 cut(s) 614
Sse9I AATT 5 cut(s) 92, 284, 294, 305, 458
SsiI CCGC 2 cut(s) 656, 855
SspI AATATT 3 cut(s) 262, 413, 511
SspMI CTAG 2 cut(s) 183, 615
StyD4I CCNGG 1 cut(s) 862
StyI CCWWGG 1 cut(s) 471
TaaI ACNGT 1 cut(s) 55
TaqI TCGA 1 cut(s) 127
TasI AATT 5 cut(s) 92, 284, 294, 305, 458
TauI GCSGC 1 cut(s) 658
TfiI GAWTC 3 cut(s) 322, 535, 764
Tru1I TTAA 5 cut(s) 21, 209, 297, 357, 633
Tru9I TTAA 5 cut(s) 21, 209, 297, 357, 633
TscAI CASTG 2 cut(s) 58, 551
TseI GCWGC 3 cut(s) 16, 652, 685
TspDTI ATGAA 9 cut(s) 81, 105, 135, 383, 429, 521, 527, 615, 660
TspRI CASTG 2 cut(s) 58, 551
VneI GTGCAC 2 cut(s) 195, 488
XagI CCTNNNNNAGG 1 cut(s) 747
XapI RAATTY 1 cut(s) 92
XceI RCATGY 2 cut(s) 203, 587
XmiI GTMKAC 1 cut(s) 902
XmnI GAANNNNTTC 1 cut(s) 321
XspI CTAG 2 cut(s) 183, 615
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.