Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0000143

Physical Location & Seq

Genomic Coordinates Forward (+)

41576170 .. 41577264

Gene Structure 1095 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00030880.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 579 bp

ATGGTCGTGCCACACATCAACGTGTTGAAGAAGAGCCACAGTACACACATATTGACCAGAATAAATTCTCACGGAGAAGGCACAAGAAGCGAGGAGGAGGAGGAGATTGTCATATGTGAATGCAAGTATGATGAAAAGGACCACGAAAGTGCATGTGGAGAAAGGTGCTTGAATGTGTTGACCGGCACGGAATGCACTCCTGGATATTGCCCTTGTGGTGTCTATTGGCAGTTTATTATTGAATACTGTGGAGAAGTGATATCATGGAAGGAAGCAAAGAAAAGATCTCATGCTTATGAAGTTGAAGGGTTGGCATATGACTACAATTTTGAATGGTATGGGGGTGTGAAGGTTCGCTGCCTCCGTGGTGCACCCAGCTGTTCGGGATTTCTTGGGGCAATTGTGGAGCACAACAAAGTCATTAAATTAAAAGAAGAGGAAATCAAAGCGGTTCGAGGACGATTCGAGAAGATCCGACCGTTGGATCTTCGTGATAATTTTGGAGGACGATCCGAGGGCGATCGTGAGGATCCGACCGTTGGATCGTCGTATAAAGTTGATCTGACTGTTAGATCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006281 GO:0006325 GO:0006464 GO:0006479 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008213 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009791 GO:0009987 GO:0010224 GO:0010228 GO:0016043 GO:0016569 GO:0016570 GO:0016571 GO:0019538 GO:0022414 GO:0032259 GO:0032501 GO:0032502 GO:0033554 GO:0034641 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046483 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0051276 GO:0051716 GO:0061458 GO:0071704 GO:0071840 GO:0090304 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00310 map00310

Pfam Domains

Protein Families

SET

Protein Analysis

192

Amino Acids

21.8

Weight (kDa)

5.85

Isoelectric Point (pI)

55.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AWS	PF17907	47 - 73	4.6e-08	AWS domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000143)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G76710 AT1G76710 AT1G76710 AT1G76710
fragaria_vesca	FvH4_1g20063 FvH4_2g15231 FvH4_3g04011 FvH4_3g28681 FvH4_4g01411 FvH4_4g10181 FvH4_4g15922 FvH4_4g16651 FvH4_4g16652 FvH4_5g13892 FvH4_5g13893 FvH4_5g20623 FvH4_5g20623 FvH4_5g20623 FvH4_5g20623 FvH4_5g25511 FvH4_6g12551 FvH4_6g12552 FvH4_6g38841 FvH4_7g04391
malus_domestica	MD05G1031300.v1.1 MD05G1031400.v1.1 MD05G1031500.v1.1 MD08G1164400.v1.1 MD10G1032900.v1.1 MD10G1033000.v1.1 MD10G1033100.v1.1
prunus_persica	Prupe.3G240700_v2.0.a1 Prupe.7G144600_v2.0.a1 Prupe.8G038500_v2.0.a1 Prupe.8G038500_v2.0.a1
pyrus_communis	pycom05g02250 pycom05g02260 pycom05g02270 pycom05g02280 pycom08g14160 pycom10g02100 pycom10g02110 pycom10g02130
rosa_chinensis	RchiOBHm_Chr1g0329481 RchiOBHm_Chr1g0329491 RchiOBHm_Chr1g0341531 RchiOBHm_Chr3g0464811 RchiOBHm_Chr3g0494701 RchiOBHm_Chr3g0497501 RchiOBHm_Chr4g0385841 RchiOBHm_Chr5g0061181 RchiOBHm_Chr6g0263001 RchiOBHm_Chr7g0193111 RchiOBHm_Chr7g0206281 RchiOBHm_Chr7g0206311
rosa_laevigata	RLG00000018908 RLG00000028528 RLG00000028803 RLG00000029882 RLG00000029883 RLG00000030361
rosa_multiflora	Rmu_co8196328.1_g000001 Rmu_co8259135.1_g000001 Rmu_co8269185.1_g000001 Rmu_sc0000076.1_g000019 Rmu_sc0000311.1_g000007 Rmu_sc0000429.1_g000038 Rmu_sc0000429.1_g000039 Rmu_sc0000429.1_g000040 Rmu_sc0000511.1_g000005 Rmu_sc0000539.1_g000054 Rmu_sc0000566.1_g000039 Rmu_sc0000805.1_g000032 Rmu_sc0000870.1_g000073 Rmu_sc0000870.1_g000074 Rmu_sc0001010.1_g000018 Rmu_sc0001083.1_g000013 Rmu_sc0001114.1_g000011 Rmu_sc0001702.1_g000027 Rmu_sc0001779.1_g000012 Rmu_sc0002923.1_g000036 Rmu_sc0003242.1_g000011 Rmu_sc0003291.1_g000036 Rmu_sc0003393.1_g000012 Rmu_sc0003872.1_g000016 Rmu_sc0003872.1_g000017 Rmu_sc0003872.1_g000018 Rmu_sc0004084.1_g000020 Rmu_sc0004386.1_g000005 Rmu_sc0004622.1_g000005 Rmu_sc0004742.1_g000021 Rmu_sc0004755.1_g000020 Rmu_sc0004805.1_g000036 Rmu_sc0005065.1_g000006 Rmu_sc0005177.1_g000004 Rmu_sc0006373.1_g000003 Rmu_sc0006373.1_g000004 Rmu_sc0007121.1_g000002 Rmu_sc0007943.1_g000003 Rmu_sc0010368.1_g000006 Rmu_sc0010543.1_g000001 Rmu_sc0012591.1_g000006 Rmu_sc0013504.1_g000009 Rmu_sc0015025.1_g000001 Rmu_sc0016170.1_g000001 Rmu_sc0017156.1_g000001 Rmu_sc0026439.1_g000001
rosa_roxburghii	Rroxscaffold_175G00432280 Rroxscaffold_1G00030190 Rroxscaffold_1G00030880 Rroxscaffold_2G00090520 Rroxscaffold_3G00227940 Rroxscaffold_3G00233400 Rroxscaffold_3G00238500 Rroxscaffold_3G00251650 Rroxscaffold_4G00301570 Rroxscaffold_4G00321040 Rroxscaffold_5G00350880 Rroxscaffold_7G00184400
rosa_rugosa	Rorug01G0080800 Rorug01G0080900 Rorug01G0193900 Rorug02G0275900 Rorug02G0275900 Rorug02G0275900 Rorug02G0305400 Rorug02G0311800 Rorug02G0350400 Rorug02G0381300 Rorug03G0136700 Rorug03G0181900 Rorug03G0268000 Rorug04G0301600 Rorug05G0175100 Rorug05G0250700 Rorug05G0298200 Rorug05G0596000 Rorug06G0029500 Rorug07G0094300 Rorug07G0094300 Rorug07G0095400 Rorug07G0140100
rosa_samantha	Rh1AG099200 Rh1AG190500 Rh1BG078900 Rh1BG079000 Rh1BG079100 Rh1CG084600 Rh1CG084700 Rh1CG095300 Rh1CG175900 Rh1DG103300 Rh1DG150400 Rh2AG079300 Rh2AG272400 Rh2AG464800 Rh2AG507400 Rh2DG078300 Rh2DG078400 Rh3CG206900 Rh3CG295400 Rh3DG206800 Rh3DG356200 Rh4CG071500 Rh4CG179200 Rh4DG064700 Rh5CG362400 Rh7AG212300 Rh7AG226200 Rh7BG222200
rosa_wichuraiana	Rw0G009990 Rw0G011260 Rw0G011270 Rw0G012910 Rw0G013740 Rw1G007740 Rw1G013050 Rw1G014230 Rw2G014270 Rw3G012720 Rw3G028110 Rw4G006630 Rw4G015270 Rw4G016160 Rw4G031380 Rw5G011440 Rw5G029180 Rw5G048360 Rw5G048430 Rw5G048780 Rw6G005250 Rw6G006390 Rw7G002840 Rw7G014080 Rw7G019650 Rw7G032790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	449
AclWI	GGATC	6 cut(s)	466, 492, 504, 524, 537, 550
AcsI	RAATTY	1 cut(s)	64
AfaI	GTAC	1 cut(s)	43
AfiI	CCNNNNNNNGG	2 cut(s)	481, 539
AflIII	ACRYGT	1 cut(s)	21
AgsI	TTSAA	5 cut(s)	28, 172, 242, 305, 332
AjnI	CCWGG	1 cut(s)	199
AleI	CACNNNNGTG	1 cut(s)	147
AluBI	AGCT	1 cut(s)	378
AluI	AGCT	1 cut(s)	378
Alw21I	GWGCWC	2 cut(s)	373, 411
Alw44I	GTGCAC	1 cut(s)	369
AlwI	GGATC	6 cut(s)	466, 492, 504, 524, 537, 550
ApaLI	GTGCAC	1 cut(s)	369
ApeKI	GCWGC	1 cut(s)	357
ApoI	RAATTY	1 cut(s)	64
ArsI	GACNNNNNNTTYG	2 cut(s)	311, 343
Asp700I	GAANNNNTTC	1 cut(s)	64
AspS9I	GGNCC	1 cut(s)	139
AvaII	GGWCC	1 cut(s)	139
BaeGI	GKGCMC	1 cut(s)	373
BamHI	GGATCC	1 cut(s)	529
Bbv12I	GWGCWC	2 cut(s)	373, 411
BbvI	GCAGC	1 cut(s)	344
BciT130I	CCWGG	1 cut(s)	201
BglII	AGATCT	1 cut(s)	284
BisI	GCNGC	1 cut(s)	358
BlsI	GCNGC	1 cut(s)	359
Bme1390I	CCNGG	1 cut(s)	201
Bme18I	GGWCC	1 cut(s)	139
BmgT120I	GGNCC	1 cut(s)	139
BmiI	GGNNCC	1 cut(s)	531
BmrFI	CCNGG	1 cut(s)	201
BsaJI	CCNNGG	2 cut(s)	364, 513
Bsc4I	CCNNNNNNNGG	2 cut(s)	481, 539
Bse118I	RCCGGY	1 cut(s)	182
BseBI	CCWGG	1 cut(s)	201
BseDI	CCNNGG	2 cut(s)	364, 513
BseLI	CCNNNNNNNGG	2 cut(s)	481, 539
BseRI	GAGGAG	4 cut(s)	107, 110, 113, 116
BseSI	GKGCMC	1 cut(s)	373
BseXI	GCAGC	1 cut(s)	344
BseYI	CCCAGC	1 cut(s)	374
Bsh1285I	CGRYCG	3 cut(s)	479, 523, 537
BsiEI	CGRYCG	3 cut(s)	479, 523, 537
BsiHKAI	GWGCWC	2 cut(s)	373, 411
BsiSI	CCGG	1 cut(s)	183
BslI	CCNNNNNNNGG	2 cut(s)	481, 539
BsmI	GAATGC	2 cut(s)	125, 197
Bsp1286I	GDGCHC	2 cut(s)	373, 411
Bsp143I	GATC	9 cut(s)	284, 471, 484, 509, 520, 529, 542, 559, 572
BspACI	CCGC	1 cut(s)	449
BspLI	GGNNCC	1 cut(s)	531
BspPI	GGATC	6 cut(s)	466, 492, 504, 524, 537, 550
BspQI	GCTCTTC	1 cut(s)	26
BsrFI	RCCGGY	1 cut(s)	182
BssAI	RCCGGY	1 cut(s)	182
BssECI	CCNNGG	2 cut(s)	364, 513
BssMI	GATC	9 cut(s)	284, 471, 484, 509, 520, 529, 542, 559, 572
Bst2UI	CCWGG	1 cut(s)	201
Bst4CI	ACNGT	5 cut(s)	41, 248, 480, 538, 568
Bst6I	CTCTTC	2 cut(s)	26, 429
BstAPI	GCANNNNNTGC	1 cut(s)	192
BstDSI	CCRYGG	1 cut(s)	364
BstKTI	GATC	9 cut(s)	287, 474, 487, 512, 523, 532, 545, 562, 575
BstMBI	GATC	9 cut(s)	284, 471, 484, 509, 520, 529, 542, 559, 572
BstMCI	CGRYCG	3 cut(s)	479, 523, 537
BstMWI	GCNNNNNNNGC	2 cut(s)	87, 192
BstNI	CCWGG	1 cut(s)	201
BstNSI	RCATGY	1 cut(s)	156
BstSCI	CCNGG	1 cut(s)	199
BstSLI	GKGCMC	1 cut(s)	373
BstV1I	GCAGC	1 cut(s)	344
BstX2I	RGATCY	4 cut(s)	284, 471, 484, 529
BstYI	RGATCY	4 cut(s)	284, 471, 484, 529
BtgI	CCRYGG	1 cut(s)	364
Cfr10I	RCCGGY	1 cut(s)	182
Cfr13I	GGNCC	1 cut(s)	139
Csp6I	GTAC	1 cut(s)	42
CviAII	CATG	3 cut(s)	153, 264, 290
CviJI	RGCY	2 cut(s)	36, 378
CviKI_1	RGCY	2 cut(s)	36, 378
CviQI	GTAC	1 cut(s)	42
DpnI	GATC	9 cut(s)	286, 473, 486, 511, 522, 531, 544, 561, 574
DpnII	GATC	9 cut(s)	284, 471, 484, 509, 520, 529, 542, 559, 572
Eam1104I	CTCTTC	2 cut(s)	26, 429
EarI	CTCTTC	2 cut(s)	26, 429
Eco32I	GATATC	1 cut(s)	261
Eco47I	GGWCC	1 cut(s)	139
EcoRII	CCWGG	1 cut(s)	199
EcoRV	GATATC	1 cut(s)	261
FaeI	CATG	3 cut(s)	156, 267, 293
FatI	CATG	3 cut(s)	152, 263, 289
FauNDI	CATATG	2 cut(s)	113, 316
Fnu4HI	GCNGC	1 cut(s)	358
Fsp4HI	GCNGC	1 cut(s)	358
GluI	GCNGC	1 cut(s)	358
GsaI	CCCAGC	1 cut(s)	378
HapII	CCGG	1 cut(s)	183
Hin1II	CATG	3 cut(s)	156, 267, 293
HincII	GTYRAC	1 cut(s)	180
HindII	GTYRAC	1 cut(s)	180
HinfI	GANTC	1 cut(s)	462
HpaII	CCGG	1 cut(s)	183
Hpy166II	GTNNAC	3 cut(s)	44, 180, 371
Hpy188I	TCNGA	4 cut(s)	476, 514, 534, 564
Hpy188III	TCNNGA	4 cut(s)	384, 466, 491, 524
Hpy8I	GTNNAC	3 cut(s)	44, 180, 371
Hpy99I	CGWCG	1 cut(s)	550
HpyAV	CCTTC	4 cut(s)	71, 262, 299, 343
HpyCH4III	ACNGT	5 cut(s)	41, 248, 480, 538, 568
HpyCH4IV	ACGT	1 cut(s)	21
HpyCH4V	TGCA	4 cut(s)	123, 152, 195, 371
HpyF10VI	GCNNNNNNNGC	2 cut(s)	87, 192
HpySE526I	ACGT	1 cut(s)	21
Hsp92II	CATG	3 cut(s)	156, 267, 293
Kzo9I	GATC	9 cut(s)	284, 471, 484, 509, 520, 529, 542, 559, 572
LguI	GCTCTTC	1 cut(s)	26
LmnI	GCTCC	1 cut(s)	406
LpnPI	CCDG	5 cut(s)	70, 186, 196, 213, 388
Lsp1109I	GCAGC	1 cut(s)	344
MaeII	ACGT	1 cut(s)	21
MalI	GATC	9 cut(s)	286, 473, 486, 511, 522, 531, 544, 561, 574
MboI	GATC	9 cut(s)	284, 471, 484, 509, 520, 529, 542, 559, 572
MboII	GAAGA	5 cut(s)	40, 43, 446, 479, 481
MfeI	CAATTG	1 cut(s)	399
MflI	RGATCY	4 cut(s)	284, 471, 484, 529
MhlI	GDGCHC	2 cut(s)	373, 411
MluCI	AATT	5 cut(s)	64, 325, 399, 425, 496
MmeI	TCCRAC	4 cut(s)	462, 499, 520, 557
MroXI	GAANNNNTTC	1 cut(s)	64
MseI	TTAA	2 cut(s)	423, 428
MslI	CAYNNNNRTG	3 cut(s)	20, 147, 294
MspA1I	CMGCKG	1 cut(s)	378
MspI	CCGG	1 cut(s)	183
MspR9I	CCNGG	1 cut(s)	201
MunI	CAATTG	1 cut(s)	399
Mva1269I	GAATGC	2 cut(s)	125, 197
MvaI	CCWGG	1 cut(s)	201
MwoI	GCNNNNNNNGC	2 cut(s)	87, 192
NdeI	CATATG	2 cut(s)	113, 316
NdeII	GATC	9 cut(s)	284, 471, 484, 509, 520, 529, 542, 559, 572
NlaIII	CATG	3 cut(s)	156, 267, 293
NlaIV	GGNNCC	1 cut(s)	531
NspI	RCATGY	1 cut(s)	156
OliI	CACNNNNGTG	1 cut(s)	147
PciSI	GCTCTTC	1 cut(s)	26
PcsI	WCGNNNNNNNCGW	1 cut(s)	361
PctI	GAATGC	2 cut(s)	125, 197
PdmI	GAANNNNTTC	1 cut(s)	64
PfeI	GAWTC	1 cut(s)	462
PfoI	TCCNGGA	1 cut(s)	199
PkrI	GCNGC	1 cut(s)	359
Ple19I	CGATCG	1 cut(s)	523
Psp6I	CCWGG	1 cut(s)	199
PspFI	CCCAGC	1 cut(s)	374
PspGI	CCWGG	1 cut(s)	199
PspN4I	GGNNCC	1 cut(s)	531
PspPI	GGNCC	1 cut(s)	139
PsuI	RGATCY	4 cut(s)	284, 471, 484, 529
PvuI	CGATCG	1 cut(s)	523
PvuII	CAGCTG	1 cut(s)	378
RsaI	GTAC	1 cut(s)	43
RsaNI	GTAC	1 cut(s)	42
RseI	CAYNNNNRTG	3 cut(s)	20, 147, 294
SapI	GCTCTTC	1 cut(s)	26
SaqAI	TTAA	2 cut(s)	423, 428
SatI	GCNGC	1 cut(s)	358
Sau3AI	GATC	9 cut(s)	284, 471, 484, 509, 520, 529, 542, 559, 572
Sau96I	GGNCC	1 cut(s)	139
ScrFI	CCNGG	1 cut(s)	201
SduI	GDGCHC	2 cut(s)	373, 411
SetI	ASST	4 cut(s)	24, 167, 354, 380
SinI	GGWCC	1 cut(s)	139
SmiMI	CAYNNNNRTG	3 cut(s)	20, 147, 294
Sse9I	AATT	5 cut(s)	64, 325, 399, 425, 496
SsiI	CCGC	1 cut(s)	449
StyD4I	CCNGG	1 cut(s)	199
TaaI	ACNGT	5 cut(s)	41, 248, 480, 538, 568
TaiI	ACGT	1 cut(s)	24
TaqI	TCGA	2 cut(s)	454, 465
TasI	AATT	5 cut(s)	64, 325, 399, 425, 496
TatI	WGTACW	1 cut(s)	41
TfiI	GAWTC	1 cut(s)	462
Tru1I	TTAA	2 cut(s)	423, 428
Tru9I	TTAA	2 cut(s)	423, 428
TseI	GCWGC	1 cut(s)	357
TspDTI	ATGAA	2 cut(s)	147, 312
TspGWI	ACGGA	3 cut(s)	87, 203, 353
VneI	GTGCAC	1 cut(s)	369
VpaK11BI	GGWCC	1 cut(s)	139
XapI	RAATTY	1 cut(s)	64
XceI	RCATGY	1 cut(s)	156
XmnI	GAANNNNTTC	1 cut(s)	64

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.