Prupe.7G144600_v2.0.a1

protein FAR1-RELATED SEQUENCE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0000143
Physical Location & Seq
Forward (+)
15826655 .. 15829030
2376 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G144600.1

Sequence Viewer

Length: 1590 bp
ATGTCTGGACATCCTTATTGTCGTCGATTTTCAAATGAGGAAATTATGCGGATTAAAGAAATGTGTATGGCTGGTATACCACCGCGCCAAATTCTCTCTTCACTTCGACAGAGCAATCCTCATCTTCGAGCAATTTCCCGAAACATTTACAATAAGAAGGCTAAAATTTTGGAAGAGAGCCTAGCAGGACGTACGGTTATTCAAGCATTAGTGGATGAACTTGGTGAAGGTGGTTTCTCTTATAACATTGAGTATGACCAAGAAGGGTATTTGACTCATTTGTTTTTTGCTCATCCTATATCAATTGAATTGAGTAAGAGTTACCCACATGTCTTTCTGATGGATTGCACTTATAAAACTAATAAGTATAAGATGCCATTATTGGATATAATAGGAGTTTCAAGTTTCAACACTTCATTCTACTCTTGTTTTGTCTTCATGCAAAAAGAAGAAGAGAAGGATTATGTGTGGGCTCTAGAAATGTTCAATAAAATTTTGGGAGTTCATAATCAGCCATTGGTGATCATATCAGATAGAGAATTGGCCTTAATGAATGCTATACGCATTGTATTCCCAAGTGCTTGTAATTTGTTATGCATGTGGCATATTGAGAAAAACATTCTTGCAAATTGTAAACCTCATTTTAGAGAAGAAGTTGATTGGGTTGCTTTCCTATCTACTTGGGCTGATTTAATCAAATCTCCAAATGAATCATCATTCGATAAAGCTTGGGATTGTTTTGAAAATGAGTACAAGGAGAATGCAGCTGTTTTGAACTATATTAAAGGTACTTGGCTGCCATTGAAAGAAAAATTTGTAAGTGCATGGACAGATGAGGTTGCACACTTAGGTAATCGGGCTATTTCAAGAGCTGAAGGTGCACATGCAACACTAAAGAAGTATCTTCAAGTTTCAACCGGAGGTCTTCGTGAGGTAAAAGAAAAAATATGTCTTGCTATTGAACATCAATTTCAAGAAATCAAAACTCAACTCTCAAGTGAAAAGGTTCGTGTTCCACATAGACTTCGGATTCCATTCTTTAAAGAAGTTGTTACTCATGTATCTATGTTTGCTTTAGATGAGTTATACAAGCAACATGAAGCTGCAAAATATGGTAATCTTTCATCTCAATGCACATGCCATTTTTTCAAAACGATGGGCATTCCTTGTGGACACATGATTAAGGATATGAAAATTCAAGTATTGCCTTTAAATGCCATACATAATCAGTGGAGGATCGATGCACGATTGTTTAACAATGATCAACATGCAAGTTTGGATGATGAAAATGATCAAATAAATAGTCTTCTATTGGACTTCAAAGAAAAGTATGAAAAACTGCCCATTCTTCAAAAAGATGATACAAAGAGACAACTATCTCAATTTGTTGGTACTTCTTTTCCCTTAATTCTGGAGCCTAAGATTCAACCTCATAAAGGACGGCCACTAGGGTCAAAGAAGAGAAATGAATCTAGCTCTACAAGGCGTGAACCATCAAAATTTGAGATAGTTGAAAAGTCTCGTAAATGTAGTGTTTGCAAAGGTGTTGGCCACAATAAAAGTACTTGTCCATTTCAAGTTGCCTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE

Protein Analysis

530

Amino Acids

61.03

Weight (kDa)

8.64

Isoelectric Point (pI)

46.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000143)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G76710 AT1G76710 AT1G76710 AT1G76710
fragaria_vesca FvH4_1g20063 FvH4_2g15231 FvH4_3g04011 FvH4_3g28681 FvH4_4g01411 FvH4_4g10181 FvH4_4g15922 FvH4_4g16651 FvH4_4g16652 FvH4_5g13892 FvH4_5g13893 FvH4_5g20623 FvH4_5g20623 FvH4_5g20623 FvH4_5g20623 FvH4_5g25511 FvH4_6g12551 FvH4_6g12552 FvH4_6g38841 FvH4_7g04391
malus_domestica MD05G1031300.v1.1 MD05G1031400.v1.1 MD05G1031500.v1.1 MD08G1164400.v1.1 MD10G1032900.v1.1 MD10G1033000.v1.1 MD10G1033100.v1.1
prunus_persica Prupe.3G240700_v2.0.a1 Prupe.7G144600_v2.0.a1 Prupe.8G038500_v2.0.a1 Prupe.8G038500_v2.0.a1
pyrus_communis pycom05g02250 pycom05g02260 pycom05g02270 pycom05g02280 pycom08g14160 pycom10g02100 pycom10g02110 pycom10g02130
rosa_chinensis RchiOBHm_Chr1g0329481 RchiOBHm_Chr1g0329491 RchiOBHm_Chr1g0341531 RchiOBHm_Chr3g0464811 RchiOBHm_Chr3g0494701 RchiOBHm_Chr3g0497501 RchiOBHm_Chr4g0385841 RchiOBHm_Chr5g0061181 RchiOBHm_Chr6g0263001 RchiOBHm_Chr7g0193111 RchiOBHm_Chr7g0206281 RchiOBHm_Chr7g0206311
rosa_laevigata RLG00000018908 RLG00000028528 RLG00000028803 RLG00000029882 RLG00000029883 RLG00000030361
rosa_multiflora Rmu_co8196328.1_g000001 Rmu_co8259135.1_g000001 Rmu_co8269185.1_g000001 Rmu_sc0000076.1_g000019 Rmu_sc0000311.1_g000007 Rmu_sc0000429.1_g000038 Rmu_sc0000429.1_g000039 Rmu_sc0000429.1_g000040 Rmu_sc0000511.1_g000005 Rmu_sc0000539.1_g000054 Rmu_sc0000566.1_g000039 Rmu_sc0000805.1_g000032 Rmu_sc0000870.1_g000073 Rmu_sc0000870.1_g000074 Rmu_sc0001010.1_g000018 Rmu_sc0001083.1_g000013 Rmu_sc0001114.1_g000011 Rmu_sc0001702.1_g000027 Rmu_sc0001779.1_g000012 Rmu_sc0002923.1_g000036 Rmu_sc0003242.1_g000011 Rmu_sc0003291.1_g000036 Rmu_sc0003393.1_g000012 Rmu_sc0003872.1_g000016 Rmu_sc0003872.1_g000017 Rmu_sc0003872.1_g000018 Rmu_sc0004084.1_g000020 Rmu_sc0004386.1_g000005 Rmu_sc0004622.1_g000005 Rmu_sc0004742.1_g000021 Rmu_sc0004755.1_g000020 Rmu_sc0004805.1_g000036 Rmu_sc0005065.1_g000006 Rmu_sc0005177.1_g000004 Rmu_sc0006373.1_g000003 Rmu_sc0006373.1_g000004 Rmu_sc0007121.1_g000002 Rmu_sc0007943.1_g000003 Rmu_sc0010368.1_g000006 Rmu_sc0010543.1_g000001 Rmu_sc0012591.1_g000006 Rmu_sc0013504.1_g000009 Rmu_sc0015025.1_g000001 Rmu_sc0016170.1_g000001 Rmu_sc0017156.1_g000001 Rmu_sc0026439.1_g000001
rosa_roxburghii Rroxscaffold_175G00432280 Rroxscaffold_1G00030190 Rroxscaffold_1G00030880 Rroxscaffold_2G00090520 Rroxscaffold_3G00227940 Rroxscaffold_3G00233400 Rroxscaffold_3G00238500 Rroxscaffold_3G00251650 Rroxscaffold_4G00301570 Rroxscaffold_4G00321040 Rroxscaffold_5G00350880 Rroxscaffold_7G00184400
rosa_rugosa Rorug01G0080800 Rorug01G0080900 Rorug01G0193900 Rorug02G0275900 Rorug02G0275900 Rorug02G0275900 Rorug02G0305400 Rorug02G0311800 Rorug02G0350400 Rorug02G0381300 Rorug03G0136700 Rorug03G0181900 Rorug03G0268000 Rorug04G0301600 Rorug05G0175100 Rorug05G0250700 Rorug05G0298200 Rorug05G0596000 Rorug06G0029500 Rorug07G0094300 Rorug07G0094300 Rorug07G0095400 Rorug07G0140100
rosa_samantha Rh1AG099200 Rh1AG190500 Rh1BG078900 Rh1BG079000 Rh1BG079100 Rh1CG084600 Rh1CG084700 Rh1CG095300 Rh1CG175900 Rh1DG103300 Rh1DG150400 Rh2AG079300 Rh2AG272400 Rh2AG464800 Rh2AG507400 Rh2DG078300 Rh2DG078400 Rh3CG206900 Rh3CG295400 Rh3DG206800 Rh3DG356200 Rh4CG071500 Rh4CG179200 Rh4DG064700 Rh5CG362400 Rh7AG212300 Rh7AG226200 Rh7BG222200
rosa_wichuraiana Rw0G009990 Rw0G011260 Rw0G011270 Rw0G012910 Rw0G013740 Rw1G007740 Rw1G013050 Rw1G014230 Rw2G014270 Rw3G012720 Rw3G028110 Rw4G006630 Rw4G015270 Rw4G016160 Rw4G031380 Rw5G011440 Rw5G029180 Rw5G048360 Rw5G048430 Rw5G048780 Rw6G005250 Rw6G006390 Rw7G002840 Rw7G014080 Rw7G019650 Rw7G032790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 243, 354
AccI GTMKAC 1 cut(s) 76
AccII CGCG 1 cut(s) 85
AciI CCGC 2 cut(s) 49, 83
AclWI GGATC 1 cut(s) 1244
AcoI YGGCCR 2 cut(s) 1442, 1549
AcsI RAATTY 6 cut(s) 90, 165, 492, 812, 1194, 1499
AcuI CTGAAG 1 cut(s) 894
AfaI GTAC 5 cut(s) 193, 752, 790, 1393, 1564
AfiI CCNNNNNNNGG 1 cut(s) 1436
AflIII ACRYGT 1 cut(s) 328
AluBI AGCT 5 cut(s) 728, 767, 872, 1103, 1476
AluI AGCT 5 cut(s) 728, 767, 872, 1103, 1476
Alw21I GWGCWC 1 cut(s) 883
Alw26I GTCTC 2 cut(s) 1363, 1524
Alw44I GTGCAC 1 cut(s) 879
AlwI GGATC 1 cut(s) 1244
AoxI GGCC 3 cut(s) 543, 1442, 1549
ApaLI GTGCAC 1 cut(s) 879
ApeKI GCWGC 3 cut(s) 764, 796, 1103
ApoI RAATTY 6 cut(s) 90, 165, 492, 812, 1194, 1499
ArsI GACNNNNNNTTYG 2 cut(s) 1288, 1320
Asp700I GAANNNNTTC 1 cut(s) 1005
AspLEI GCGC 1 cut(s) 87
AsuHPI GGTGA 2 cut(s) 236, 532
BaeGI GKGCMC 1 cut(s) 883
BaeI ACNNNNGTAYC 2 cut(s) 1044, 1077
BalI TGGCCA 1 cut(s) 1551
BanII GRGCYC 1 cut(s) 475
BbsI GAAGAC 3 cut(s) 427, 917, 1298
Bbv12I GWGCWC 1 cut(s) 883
BbvI GCAGC 3 cut(s) 776, 783, 1090
BccI CCATC 3 cut(s) 334, 1150, 1501
BceAI ACGGC 1 cut(s) 1457
BclI TGATCA 3 cut(s) 522, 1261, 1291
BcoDI GTCTC 2 cut(s) 1363, 1524
BfaI CTAG 4 cut(s) 182, 476, 1448, 1473
BisI GCNGC 3 cut(s) 765, 797, 1104
BlsI GCNGC 3 cut(s) 766, 798, 1105
BmcAI AGTACT 1 cut(s) 1564
BmiI GGNNCC 1 cut(s) 1416
BmsI GCATC 2 cut(s) 363, 1231
BpiI GAAGAC 3 cut(s) 427, 917, 1298
BplI GAGNNNNNCTC 2 cut(s) 103, 135
BpmI CTGGAG 1 cut(s) 1433
BpuEI CTTGAG 1 cut(s) 979
Bsa29I ATCGAT 1 cut(s) 1239
BsaWI WCCGGW 1 cut(s) 917
Bsc4I CCNNNNNNNGG 1 cut(s) 1436
BseCI ATCGAT 1 cut(s) 1239
BseGI GGATG 4 cut(s) 10, 220, 292, 1285
BseLI CCNNNNNNNGG 1 cut(s) 1436
BseSI GKGCMC 1 cut(s) 883
BseXI GCAGC 3 cut(s) 776, 783, 1090
Bsh1236I CGCG 1 cut(s) 85
BshFI GGCC 3 cut(s) 545, 1444, 1551
BshVI ATCGAT 1 cut(s) 1239
BsiHKAI GWGCWC 1 cut(s) 883
BsiSI CCGG 1 cut(s) 918
BsiWI CGTACG 1 cut(s) 191
BslI CCNNNNNNNGG 1 cut(s) 1436
BsmAI GTCTC 2 cut(s) 1363, 1524
BsmI GAATGC 3 cut(s) 559, 766, 1161
BsnI GGCC 3 cut(s) 545, 1444, 1551
Bsp1286I GDGCHC 2 cut(s) 475, 883
Bsp143I GATC 4 cut(s) 522, 1236, 1261, 1291
BspACI CCGC 2 cut(s) 49, 83
BspANI GGCC 3 cut(s) 545, 1444, 1551
BspDI ATCGAT 1 cut(s) 1239
BspFNI CGCG 1 cut(s) 85
BspLI GGNNCC 1 cut(s) 1416
BspPI GGATC 1 cut(s) 1244
BssMI GATC 4 cut(s) 522, 1236, 1261, 1291
BssNAI GTATAC 1 cut(s) 77
Bst1107I GTATAC 1 cut(s) 77
Bst4CI ACNGT 1 cut(s) 196
Bst6I CTCTTC 4 cut(s) 103, 168, 447, 1454
BstDEI CTNAG 2 cut(s) 847, 1419
BstENI CCTNNNNNAGG 1 cut(s) 1434
BstF5I GGATG 4 cut(s) 10, 220, 292, 1285
BstFNI CGCG 1 cut(s) 85
BstHHI GCGC 1 cut(s) 87
BstKTI GATC 4 cut(s) 525, 1239, 1264, 1294
BstMAI GTCTC 2 cut(s) 1363, 1524
BstMBI GATC 4 cut(s) 522, 1236, 1261, 1291
BstMWI GCNNNNNNNGC 1 cut(s) 878
BstNSI RCATGY 5 cut(s) 332, 601, 887, 1140, 1271
BstSLI GKGCMC 1 cut(s) 883
BstUI CGCG 1 cut(s) 85
BstV1I GCAGC 3 cut(s) 776, 783, 1090
BstV2I GAAGAC 3 cut(s) 427, 917, 1298
BstZ17I GTATAC 1 cut(s) 77
Bsu15I ATCGAT 1 cut(s) 1239
BsuRI GGCC 3 cut(s) 545, 1444, 1551
BsuTUI ATCGAT 1 cut(s) 1239
BtsCI GGATG 4 cut(s) 10, 220, 292, 1285
BtsIMutI CAGTG 1 cut(s) 1235
CfoI GCGC 1 cut(s) 87
ClaI ATCGAT 1 cut(s) 1239
Csp6I GTAC 5 cut(s) 192, 751, 789, 1392, 1563
CviQI GTAC 5 cut(s) 192, 751, 789, 1392, 1563
DdeI CTNAG 2 cut(s) 847, 1419
DpnI GATC 4 cut(s) 524, 1238, 1263, 1293
DpnII GATC 4 cut(s) 522, 1236, 1261, 1291
DraI TTTAAA 2 cut(s) 1042, 1212
EaeI YGGCCR 2 cut(s) 1442, 1549
Eam1104I CTCTTC 4 cut(s) 103, 168, 447, 1454
EarI CTCTTC 4 cut(s) 103, 168, 447, 1454
Eco24I GRGCYC 1 cut(s) 475
Eco57I CTGAAG 1 cut(s) 894
EcoNI CCTNNNNNAGG 1 cut(s) 1434
EcoT22I ATGCAT 1 cut(s) 599
EcoT38I GRGCYC 1 cut(s) 475
FbaI TGATCA 3 cut(s) 522, 1261, 1291
FblI GTMKAC 1 cut(s) 76
Fnu4HI GCNGC 3 cut(s) 765, 797, 1104
FokI GGATG 3 cut(s) 227, 279, 1292
FriOI GRGCYC 1 cut(s) 475
Fsp4HI GCNGC 3 cut(s) 765, 797, 1104
FspBI CTAG 4 cut(s) 182, 476, 1448, 1473
GlaI GCGC 1 cut(s) 86
GluI GCNGC 3 cut(s) 765, 797, 1104
GsuI CTGGAG 1 cut(s) 1433
HaeIII GGCC 3 cut(s) 545, 1444, 1551
HapII CCGG 1 cut(s) 918
HhaI GCGC 1 cut(s) 87
Hin6I GCGC 1 cut(s) 85
HinP1I GCGC 1 cut(s) 85
HindIII AAGCTT 1 cut(s) 726
HinfI GANTC 5 cut(s) 274, 710, 1030, 1423, 1469
HpaII CCGG 1 cut(s) 918
HphI GGTGA 2 cut(s) 236, 532
Hpy166II GTNNAC 5 cut(s) 77, 635, 881, 1172, 1490
Hpy188I TCNGA 3 cut(s) 339, 532, 1029
Hpy188III TCNNGA 7 cut(s) 6, 138, 476, 867, 929, 974, 1412
Hpy8I GTNNAC 5 cut(s) 77, 635, 881, 1172, 1490
Hpy99I CGWCG 1 cut(s) 27
HpyAV CCTTC 5 cut(s) 151, 221, 257, 451, 869
HpyCH4III ACNGT 1 cut(s) 196
HpyCH4IV ACGT 1 cut(s) 190
HpyF10VI GCNNNNNNNGC 1 cut(s) 878
HpyF3I CTNAG 2 cut(s) 847, 1419
HpySE526I ACGT 1 cut(s) 190
HspAI GCGC 1 cut(s) 85
Ksp22I TGATCA 3 cut(s) 522, 1261, 1291
Kzo9I GATC 4 cut(s) 522, 1236, 1261, 1291
LmnI GCTCC 1 cut(s) 1414
LpnPI CCDG 4 cut(s) 57, 171, 931, 1397
Lsp1109I GCAGC 3 cut(s) 776, 783, 1090
LweI GCATC 2 cut(s) 363, 1231
MaeI CTAG 4 cut(s) 182, 476, 1448, 1473
MaeII ACGT 1 cut(s) 190
MaeIII GTNAC 2 cut(s) 320, 1051
MalI GATC 4 cut(s) 524, 1238, 1263, 1293
MboI GATC 4 cut(s) 522, 1236, 1261, 1291
MfeI CAATTG 1 cut(s) 303
MhlI GDGCHC 2 cut(s) 475, 883
MlsI TGGCCA 1 cut(s) 1551
MluNI TGGCCA 1 cut(s) 1551
MlyI GAGTC 1 cut(s) 268
MnlI CCTC 8 cut(s) 31, 129, 648, 829, 914, 925, 1227, 1440
Mox20I TGGCCA 1 cut(s) 1551
Mph1103I ATGCAT 1 cut(s) 599
MroXI GAANNNNTTC 1 cut(s) 1005
MscI TGGCCA 1 cut(s) 1551
MslI CAYNNNNRTG 1 cut(s) 1129
Msp20I TGGCCA 1 cut(s) 1551
MspA1I CMGCKG 1 cut(s) 767
MspI CCGG 1 cut(s) 918
MunI CAATTG 1 cut(s) 303
Mva1269I GAATGC 3 cut(s) 559, 766, 1161
MvnI CGCG 1 cut(s) 85
MwoI GCNNNNNNNGC 1 cut(s) 878
NdeII GATC 4 cut(s) 522, 1236, 1261, 1291
NlaIV GGNNCC 1 cut(s) 1416
NsiI ATGCAT 1 cut(s) 599
NspI RCATGY 5 cut(s) 332, 601, 887, 1140, 1271
PciI ACATGT 1 cut(s) 328
PctI GAATGC 3 cut(s) 559, 766, 1161
PdmI GAANNNNTTC 1 cut(s) 1005
PfeI GAWTC 4 cut(s) 710, 1030, 1423, 1469
Pfl23II CGTACG 1 cut(s) 191
PkrI GCNGC 3 cut(s) 766, 798, 1105
PleI GAGTC 1 cut(s) 268
PpsI GAGTC 1 cut(s) 268
PscI ACATGT 1 cut(s) 328
PsiI TTATAA 2 cut(s) 243, 354
PspLI CGTACG 1 cut(s) 191
PspN4I GGNNCC 1 cut(s) 1416
PvuII CAGCTG 1 cut(s) 767
RsaI GTAC 5 cut(s) 193, 752, 790, 1393, 1564
RsaNI GTAC 5 cut(s) 192, 751, 789, 1392, 1563
RseI CAYNNNNRTG 1 cut(s) 1129
SatI GCNGC 3 cut(s) 765, 797, 1104
Sau3AI GATC 4 cut(s) 522, 1236, 1261, 1291
ScaI AGTACT 1 cut(s) 1564
SchI GAGTC 1 cut(s) 268
SduI GDGCHC 2 cut(s) 475, 883
SfaNI GCATC 2 cut(s) 363, 1231
SmiMI CAYNNNNRTG 1 cut(s) 1129
SmlI CTYRAG 1 cut(s) 994
SmoI CTYRAG 1 cut(s) 994
SsiI CCGC 2 cut(s) 49, 83
SspMI CTAG 4 cut(s) 182, 476, 1448, 1473
TaaI ACNGT 1 cut(s) 196
TaiI ACGT 1 cut(s) 193
TaqI TCGA 5 cut(s) 25, 106, 127, 720, 1239
TatI WGTACW 2 cut(s) 750, 1562
TfiI GAWTC 4 cut(s) 710, 1030, 1423, 1469
TscAI CASTG 1 cut(s) 1235
TseI GCWGC 3 cut(s) 764, 796, 1103
TspRI CASTG 1 cut(s) 1235
VneI GTGCAC 1 cut(s) 879
XagI CCTNNNNNAGG 1 cut(s) 1434
XapI RAATTY 6 cut(s) 90, 165, 492, 812, 1194, 1499
XbaI TCTAGA 1 cut(s) 475
XceI RCATGY 5 cut(s) 332, 601, 887, 1140, 1271
XmiI GTMKAC 1 cut(s) 76
XmnI GAANNNNTTC 1 cut(s) 1005
XspI CTAG 4 cut(s) 182, 476, 1448, 1473
ZrmI AGTACT 1 cut(s) 1564
Zsp2I ATGCAT 1 cut(s) 599
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.