Rmu_sc0000870.1_g000074

protein FAR1-RELATED SEQUENCE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000870.1
OG0000143
Physical Location & Seq
Reverse (-)
311513 .. 312523
1011 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000870.1_g000074.1.cds

Sequence Viewer

Length: 1011 bp
atggtcggttcctgtccggatcgtattggtttctcggtccctcgggtcaacccgcccagccctacttcagatgatatggaagaagacttacagtcaaatcacccgtctagtatccttgaagtccccattgtcaatggtaaatattatgtgttatcacttttattatgtttagagctaattattttgtttttctttgatttgcttgaaggcccctctatgattgatgattctgatgaattcctctcattatcgacgaaattttttgaaaatcgagaagaccttgtcagtgctattcgtaagattgggttgctgcaaggtgacgttatggtaattaaaatatctagaagcaatagagatgtggctattggttgtgatagaggtggttgttatcgaacctgctctgcacttgaggagaagaaaaagaattcagcttctcatcgtatagattgccctttcaaaattgtgggaagaaggacagctgaagggttgtggaaggtcgagataagtagcttgttacataatcatgagccttccactgacatggctggacatccatattgtcgtcggtttactaaagaggaagcctcacaagttgaacaaatgagtcgggctggcataaaaccacgtcaaattctctcttcacttcgacaaaataatcctgatcttctagctgtttccagaaatatatatagcaagacatctcagtttagaagggagattctaggtgggcgttcgattattcaagcattattagatgagcttggtggtgctggtttttctcataatgtcaaatatgatcactctggtcatttgactcatctattctttgctcatcccacttccattgagttgactaaaagttactctaatgtctttgtgatggattgtacttataagacaaataagtacaagatgccattacttgagattataggagtgtcgagtttcaacacatcattctattcgtgttttgttttcatgcaaaaagaggaacaacatgattatcagtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE

Protein Analysis

336

Amino Acids

38.02

Weight (kDa)

6.42

Isoelectric Point (pI)

54.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000143)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G76710 AT1G76710 AT1G76710 AT1G76710
fragaria_vesca FvH4_1g20063 FvH4_2g15231 FvH4_3g04011 FvH4_3g28681 FvH4_4g01411 FvH4_4g10181 FvH4_4g15922 FvH4_4g16651 FvH4_4g16652 FvH4_5g13892 FvH4_5g13893 FvH4_5g20623 FvH4_5g20623 FvH4_5g20623 FvH4_5g20623 FvH4_5g25511 FvH4_6g12551 FvH4_6g12552 FvH4_6g38841 FvH4_7g04391
malus_domestica MD05G1031300.v1.1 MD05G1031400.v1.1 MD05G1031500.v1.1 MD08G1164400.v1.1 MD10G1032900.v1.1 MD10G1033000.v1.1 MD10G1033100.v1.1
prunus_persica Prupe.3G240700_v2.0.a1 Prupe.7G144600_v2.0.a1 Prupe.8G038500_v2.0.a1 Prupe.8G038500_v2.0.a1
pyrus_communis pycom05g02250 pycom05g02260 pycom05g02270 pycom05g02280 pycom08g14160 pycom10g02100 pycom10g02110 pycom10g02130
rosa_chinensis RchiOBHm_Chr1g0329481 RchiOBHm_Chr1g0329491 RchiOBHm_Chr1g0341531 RchiOBHm_Chr3g0464811 RchiOBHm_Chr3g0494701 RchiOBHm_Chr3g0497501 RchiOBHm_Chr4g0385841 RchiOBHm_Chr5g0061181 RchiOBHm_Chr6g0263001 RchiOBHm_Chr7g0193111 RchiOBHm_Chr7g0206281 RchiOBHm_Chr7g0206311
rosa_laevigata RLG00000018908 RLG00000028528 RLG00000028803 RLG00000029882 RLG00000029883 RLG00000030361
rosa_multiflora Rmu_co8196328.1_g000001 Rmu_co8259135.1_g000001 Rmu_co8269185.1_g000001 Rmu_sc0000076.1_g000019 Rmu_sc0000311.1_g000007 Rmu_sc0000429.1_g000038 Rmu_sc0000429.1_g000039 Rmu_sc0000429.1_g000040 Rmu_sc0000511.1_g000005 Rmu_sc0000539.1_g000054 Rmu_sc0000566.1_g000039 Rmu_sc0000805.1_g000032 Rmu_sc0000870.1_g000073 Rmu_sc0000870.1_g000074 Rmu_sc0001010.1_g000018 Rmu_sc0001083.1_g000013 Rmu_sc0001114.1_g000011 Rmu_sc0001702.1_g000027 Rmu_sc0001779.1_g000012 Rmu_sc0002923.1_g000036 Rmu_sc0003242.1_g000011 Rmu_sc0003291.1_g000036 Rmu_sc0003393.1_g000012 Rmu_sc0003872.1_g000016 Rmu_sc0003872.1_g000017 Rmu_sc0003872.1_g000018 Rmu_sc0004084.1_g000020 Rmu_sc0004386.1_g000005 Rmu_sc0004622.1_g000005 Rmu_sc0004742.1_g000021 Rmu_sc0004755.1_g000020 Rmu_sc0004805.1_g000036 Rmu_sc0005065.1_g000006 Rmu_sc0005177.1_g000004 Rmu_sc0006373.1_g000003 Rmu_sc0006373.1_g000004 Rmu_sc0007121.1_g000002 Rmu_sc0007943.1_g000003 Rmu_sc0010368.1_g000006 Rmu_sc0010543.1_g000001 Rmu_sc0012591.1_g000006 Rmu_sc0013504.1_g000009 Rmu_sc0015025.1_g000001 Rmu_sc0016170.1_g000001 Rmu_sc0017156.1_g000001 Rmu_sc0026439.1_g000001
rosa_roxburghii Rroxscaffold_175G00432280 Rroxscaffold_1G00030190 Rroxscaffold_1G00030880 Rroxscaffold_2G00090520 Rroxscaffold_3G00227940 Rroxscaffold_3G00233400 Rroxscaffold_3G00238500 Rroxscaffold_3G00251650 Rroxscaffold_4G00301570 Rroxscaffold_4G00321040 Rroxscaffold_5G00350880 Rroxscaffold_7G00184400
rosa_rugosa Rorug01G0080800 Rorug01G0080900 Rorug01G0193900 Rorug02G0275900 Rorug02G0275900 Rorug02G0275900 Rorug02G0305400 Rorug02G0311800 Rorug02G0350400 Rorug02G0381300 Rorug03G0136700 Rorug03G0181900 Rorug03G0268000 Rorug04G0301600 Rorug05G0175100 Rorug05G0250700 Rorug05G0298200 Rorug05G0596000 Rorug06G0029500 Rorug07G0094300 Rorug07G0094300 Rorug07G0095400 Rorug07G0140100
rosa_samantha Rh1AG099200 Rh1AG190500 Rh1BG078900 Rh1BG079000 Rh1BG079100 Rh1CG084600 Rh1CG084700 Rh1CG095300 Rh1CG175900 Rh1DG103300 Rh1DG150400 Rh2AG079300 Rh2AG272400 Rh2AG464800 Rh2AG507400 Rh2DG078300 Rh2DG078400 Rh3CG206900 Rh3CG295400 Rh3DG206800 Rh3DG356200 Rh4CG071500 Rh4CG179200 Rh4DG064700 Rh5CG362400 Rh7AG212300 Rh7AG226200 Rh7BG222200
rosa_wichuraiana Rw0G009990 Rw0G011260 Rw0G011270 Rw0G012910 Rw0G013740 Rw1G007740 Rw1G013050 Rw1G014230 Rw2G014270 Rw3G012720 Rw3G028110 Rw4G006630 Rw4G015270 Rw4G016160 Rw4G031380 Rw5G011440 Rw5G029180 Rw5G048360 Rw5G048430 Rw5G048780 Rw6G005250 Rw6G006390 Rw7G002840 Rw7G014080 Rw7G019650 Rw7G032790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 894
Acc36I ACCTGC 1 cut(s) 404
AccIII TCCGGA 1 cut(s) 16
AciI CCGC 1 cut(s) 53
AclWI GGATC 1 cut(s) 27
AcsI RAATTY 4 cut(s) 236, 257, 424, 630
AcuI CTGAAG 2 cut(s) 51, 501
AfaI GTAC 2 cut(s) 889, 908
AgsI TTSAA 7 cut(s) 119, 206, 266, 457, 596, 743, 949
AhdI GACNNNNNGTC 1 cut(s) 91
AjiI CACGTC 1 cut(s) 626
AluBI AGCT 6 cut(s) 175, 431, 479, 510, 671, 760
AluI AGCT 6 cut(s) 175, 431, 479, 510, 671, 760
AlwI GGATC 1 cut(s) 27
Ama87I CYCGRG 1 cut(s) 42
Aor13HI TCCGGA 1 cut(s) 16
AoxI GGCC 1 cut(s) 208
ApeKI GCWGC 1 cut(s) 310
ApoI RAATTY 4 cut(s) 236, 257, 424, 630
ArsI GACNNNNNNTTYG 2 cut(s) 89, 121
AspS9I GGNCC 2 cut(s) 37, 209
AsuHPI GGTGA 2 cut(s) 92, 329
AvaI CYCGRG 1 cut(s) 42
AvaII GGWCC 1 cut(s) 37
BarI GAAGNNNNNNTAC 2 cut(s) 72, 104
BbsI GAAGAC 2 cut(s) 90, 282
BbvI GCAGC 1 cut(s) 297
BccI CCATC 1 cut(s) 874
BciVI GTATCC 1 cut(s) 122
BclI TGATCA 1 cut(s) 796
BfaI CTAG 4 cut(s) 108, 342, 668, 722
BfuAI ACCTGC 1 cut(s) 404
BfuI GTATCC 1 cut(s) 122
BisI GCNGC 1 cut(s) 311
BlsI GCNGC 1 cut(s) 312
Bme18I GGWCC 1 cut(s) 37
BmeRI GACNNNNNGTC 1 cut(s) 91
BmeT110I CYCGRG 1 cut(s) 42
BmgBI CACGTC 1 cut(s) 626
BmgT120I GGNCC 2 cut(s) 37, 209
BmiI GGNNCC 3 cut(s) 10, 39, 211
BmsI GCATC 1 cut(s) 903
BpiI GAAGAC 2 cut(s) 90, 282
BplI GAGNNNNNCTC 2 cut(s) 569, 601
BpuEI CTTGAG 2 cut(s) 428, 944
BsaJI CCNNGG 1 cut(s) 41
BsaWI WCCGGW 1 cut(s) 16
BseAI TCCGGA 1 cut(s) 16
BseDI CCNNGG 1 cut(s) 41
BseGI GGATG 2 cut(s) 550, 832
BseMII CTCAG 1 cut(s) 716
BseRI GAGGAG 1 cut(s) 425
BseXI GCAGC 1 cut(s) 297
BseYI CCCAGC 1 cut(s) 56
BsgI GTGCAG 1 cut(s) 387
BshFI GGCC 1 cut(s) 210
BsiHKCI CYCGRG 1 cut(s) 42
BsiSI CCGG 1 cut(s) 17
BslFI GGGAC 2 cut(s) 23, 107
BsmFI GGGAC 2 cut(s) 23, 107
BsnI GGCC 1 cut(s) 210
BsoBI CYCGRG 1 cut(s) 42
Bsp13I TCCGGA 1 cut(s) 16
Bsp143I GATC 3 cut(s) 19, 661, 796
BspACI CCGC 1 cut(s) 53
BspANI GGCC 1 cut(s) 210
BspCNI CTCAG 1 cut(s) 715
BspEI TCCGGA 1 cut(s) 16
BspHI TCATGA 1 cut(s) 523
BspLI GGNNCC 3 cut(s) 10, 39, 211
BspMI ACCTGC 1 cut(s) 404
BspPI GGATC 1 cut(s) 27
BssECI CCNNGG 1 cut(s) 41
BssMI GATC 3 cut(s) 19, 661, 796
Bst4CI ACNGT 1 cut(s) 93
Bst6I CTCTTC 1 cut(s) 643
BstC8I GCNNGC 1 cut(s) 613
BstDEI CTNAG 1 cut(s) 702
BstF5I GGATG 2 cut(s) 550, 832
BstKTI GATC 3 cut(s) 22, 664, 799
BstMBI GATC 3 cut(s) 19, 661, 796
BstV1I GCAGC 1 cut(s) 297
BstV2I GAAGAC 2 cut(s) 90, 282
BstXI CCANNNNNNTGG 1 cut(s) 541
BsuI GTATCC 1 cut(s) 122
BsuRI GGCC 1 cut(s) 210
BtrI CACGTC 1 cut(s) 626
BtsCI GGATG 2 cut(s) 550, 832
BtsIMutI CAGTG 2 cut(s) 292, 534
BveI ACCTGC 1 cut(s) 404
Cac8I GCNNGC 1 cut(s) 613
CciI TCATGA 1 cut(s) 523
Cfr13I GGNCC 2 cut(s) 37, 209
Csp6I GTAC 2 cut(s) 888, 907
CspCI CAANNNNNGTGG 2 cut(s) 826, 861
CviAII CATG 4 cut(s) 524, 541, 979, 998
CviQI GTAC 2 cut(s) 888, 907
DdeI CTNAG 1 cut(s) 702
DpnI GATC 3 cut(s) 21, 663, 798
DpnII GATC 3 cut(s) 19, 661, 796
DriI GACNNNNNGTC 1 cut(s) 91
Eam1104I CTCTTC 1 cut(s) 643
Eam1105I GACNNNNNGTC 1 cut(s) 91
EarI CTCTTC 1 cut(s) 643
Eco47I GGWCC 1 cut(s) 37
Eco57I CTGAAG 2 cut(s) 51, 501
Eco88I CYCGRG 1 cut(s) 42
EcoO109I RGGNCCY 1 cut(s) 209
EcoRI GAATTC 2 cut(s) 236, 424
FaeI CATG 4 cut(s) 527, 544, 982, 1001
FaqI GGGAC 2 cut(s) 23, 107
FatI CATG 4 cut(s) 523, 540, 978, 997
FauI CCCGC 1 cut(s) 60
FbaI TGATCA 1 cut(s) 796
Fnu4HI GCNGC 1 cut(s) 311
FokI GGATG 2 cut(s) 537, 819
Fsp4HI GCNGC 1 cut(s) 311
FspBI CTAG 4 cut(s) 108, 342, 668, 722
GluI GCNGC 1 cut(s) 311
GsaI CCCAGC 1 cut(s) 60
HaeIII GGCC 1 cut(s) 210
HapII CCGG 1 cut(s) 17
Hin1II CATG 4 cut(s) 527, 544, 982, 1001
HincII GTYRAC 2 cut(s) 49, 852
HindII GTYRAC 2 cut(s) 49, 852
HinfI GANTC 4 cut(s) 227, 604, 718, 814
HpaII CCGG 1 cut(s) 17
HphI GGTGA 2 cut(s) 92, 329
Hpy166II GTNNAC 3 cut(s) 49, 570, 852
Hpy188I TCNGA 2 cut(s) 70, 232
Hpy188III TCNNGA 7 cut(s) 17, 272, 342, 499, 524, 659, 678
Hpy8I GTNNAC 3 cut(s) 49, 570, 852
Hpy99I CGWCG 2 cut(s) 256, 567
HpyAV CCTTC 6 cut(s) 200, 465, 476, 487, 540, 705
HpyCH4III ACNGT 1 cut(s) 93
HpyCH4IV ACGT 2 cut(s) 321, 625
HpyCH4V TGCA 3 cut(s) 313, 404, 982
HpyF3I CTNAG 1 cut(s) 702
HpySE526I ACGT 2 cut(s) 321, 625
Hsp92II CATG 4 cut(s) 527, 544, 982, 1001
Kpn2I TCCGGA 1 cut(s) 16
Ksp22I TGATCA 1 cut(s) 796
Kzo9I GATC 3 cut(s) 19, 661, 796
Lsp1109I GCAGC 1 cut(s) 297
LweI GCATC 1 cut(s) 903
MaeI CTAG 4 cut(s) 108, 342, 668, 722
MaeII ACGT 2 cut(s) 321, 625
MaeIII GTNAC 3 cut(s) 317, 513, 860
MalI GATC 3 cut(s) 21, 663, 798
MboI GATC 3 cut(s) 19, 661, 796
MboII GAAGA 7 cut(s) 92, 95, 287, 427, 480, 630, 656
MluCI AATT 7 cut(s) 177, 236, 257, 330, 424, 459, 630
MlyI GAGTC 2 cut(s) 613, 808
MnlI CCTC 8 cut(s) 51, 223, 251, 371, 403, 571, 595, 982
MroI TCCGGA 1 cut(s) 16
MseI TTAA 1 cut(s) 333
MslI CAYNNNNRTG 2 cut(s) 522, 539
MspA1I CMGCKG 1 cut(s) 479
MspI CCGG 1 cut(s) 17
NdeII GATC 3 cut(s) 19, 661, 796
NlaIII CATG 4 cut(s) 527, 544, 982, 1001
NlaIV GGNNCC 3 cut(s) 10, 39, 211
NmuCI GTSAC 1 cut(s) 317
PagI TCATGA 1 cut(s) 523
PfeI GAWTC 2 cut(s) 227, 718
PflFI GACNNNGTC 1 cut(s) 281
PkrI GCNGC 1 cut(s) 312
PleI GAGTC 2 cut(s) 612, 808
PpsI GAGTC 2 cut(s) 612, 808
PsiI TTATAA 1 cut(s) 894
PspFI CCCAGC 1 cut(s) 56
PspN4I GGNNCC 3 cut(s) 10, 39, 211
PspPI GGNCC 2 cut(s) 37, 209
PsyI GACNNNGTC 1 cut(s) 281
PvuII CAGCTG 1 cut(s) 479
RsaI GTAC 2 cut(s) 889, 908
RsaNI GTAC 2 cut(s) 888, 907
RseI CAYNNNNRTG 2 cut(s) 522, 539
SaqAI TTAA 1 cut(s) 333
SatI GCNGC 1 cut(s) 311
Sau3AI GATC 3 cut(s) 19, 661, 796
Sau96I GGNCC 2 cut(s) 37, 209
SchI GAGTC 2 cut(s) 613, 808
SfaNI GCATC 1 cut(s) 903
SinI GGWCC 1 cut(s) 37
SmiMI CAYNNNNRTG 2 cut(s) 522, 539
SmlI CTYRAG 2 cut(s) 407, 923
SmoI CTYRAG 2 cut(s) 407, 923
Sse9I AATT 7 cut(s) 177, 236, 257, 330, 424, 459, 630
SsiI CCGC 1 cut(s) 53
SspI AATATT 1 cut(s) 143
SspMI CTAG 4 cut(s) 108, 342, 668, 722
TaaI ACNGT 1 cut(s) 93
TaiI ACGT 2 cut(s) 324, 628
TaqI TCGA 7 cut(s) 251, 271, 391, 498, 646, 734, 941
TaqII GACCGA 1 cut(s) 25
TasI AATT 7 cut(s) 177, 236, 257, 330, 424, 459, 630
TatI WGTACW 2 cut(s) 887, 906
TfiI GAWTC 2 cut(s) 227, 718
Tru1I TTAA 1 cut(s) 333
Tru9I TTAA 1 cut(s) 333
TscAI CASTG 2 cut(s) 292, 541
TseFI GTSAC 1 cut(s) 317
TseI GCWGC 1 cut(s) 310
Tsp45I GTSAC 1 cut(s) 317
TspDTI ATGAA 2 cut(s) 249, 967
TspRI CASTG 2 cut(s) 292, 541
Tth111I GACNNNGTC 1 cut(s) 281
VpaK11BI GGWCC 1 cut(s) 37
XapI RAATTY 4 cut(s) 236, 257, 424, 630
XbaI TCTAGA 1 cut(s) 341
XspI CTAG 4 cut(s) 108, 342, 668, 722
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.