Rw7G014080

protein FAR1-RELATED SEQUENCE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0000143
Physical Location & Seq
Forward (+)
13547403 .. 13551309
3907 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G014080.1

Sequence Viewer

Length: 1251 bp
ATGGTAGAGCAAGAAATTTTAGACCCATCTTTGGAGAAAATTTTACATCTGATTTGCAATGGAGACATGGAAGAACAATATGAATTTACAATTTTCAAAAACATCTATAATGAAAAGTATAGAATTATGAAGAAGAATTTTGCAGGTCGTACAGTTATTCAAGCTTTATTTGAAGAAATTGGTCAAGCTGGTTTCATCTATAACATTGAGTATGATCAAAATGGTCGGTTGACTCATTTAATGTTTGCTCATCCACTTTCAATTGCTTTGACTAAGAGCTATACAAATGTCTTTGTGATGGATTGTACATACAAGACTAACAAGTACAAGATGCCATTACTAGACATTGTAGGAGTCACAAGTTTCATTACATCTTTCTATTCTTGCTTTGTCTTCATGCAAAAAGAGGAAGAAGAGGACTACGTATGGGCTCTAACTATGTTCAACAAAATTTTGGGTGTTGAGGTTTATCCTTTGGTGATTATTACTGATAGAGAATTGGCACTGATGAATGCTATAAATATTATTTTTCCAAGGACTGCTAACATATTATGTGTGTGGCATATTGAGAAAAATGTAGTTACAAACTGTAAGCCTCATTTTACAGAAGAAGATGATTGGGTTGCTTTCATCTCTACGCGGACTGCTTTGATCAATTCTCATGATGAATCATCCTTTAATGAAGCTTGGACTAATTTTGAAGCTGAGTACAATAAGAATGTGGCTATTCTCAATTATATCAAACGTACTTGGCTTCCATTAAAAGAGAAATTTGTAACTGCATGGACATGTCAGTTTACGCACTTTGGTAATGGTGCTACATCAAGAGGTGAGGCAAAGTCCAACAATCTTTCATCTCAATGCAAGGGTCATTTTTACATAACAATGGGCCTTCCTTGTGTACATATGATTAGGGAGATGAAATTTGAAGCATTGCAATTGAACAACATCATTCAGGAACAATGGAGGATTGATACAAGATCATTTGATCATGGTGCGAGCTTGGATGATGGAGATGAGATAGTTGTTCTTTTATCTGAATTCAAGTTTAAGTATGAGAGAATGCCTCTTACTCAGAAAGACAATACCAAGAGGAAACTCACTCAGTTTCTTGGTGCTTCTCTTCCATTATTACTAGAGCGTAATGTTCAACCTCATATAGGTCGTCCATTAGGATCAAAAAACAAAAAGGAATCTAGCTCTCCAAAGCGTGATCCTTTAGCCTTTGAGATAATGGAAGAAAAAGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE

Protein Analysis

416

Amino Acids

48.42

Weight (kDa)

5.94

Isoelectric Point (pI)

40.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ZSWIM1-3_RNaseH-like PF21056 64 - 180 1.5e-10 Zinc finger SWIM domain-containing protein 1/3, RNaseH-like domain
MULE PF10551 97 - 192 1.7e-24 MULE transposase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000143)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G76710 AT1G76710 AT1G76710 AT1G76710
fragaria_vesca FvH4_1g20063 FvH4_2g15231 FvH4_3g04011 FvH4_3g28681 FvH4_4g01411 FvH4_4g10181 FvH4_4g15922 FvH4_4g16651 FvH4_4g16652 FvH4_5g13892 FvH4_5g13893 FvH4_5g20623 FvH4_5g20623 FvH4_5g20623 FvH4_5g20623 FvH4_5g25511 FvH4_6g12551 FvH4_6g12552 FvH4_6g38841 FvH4_7g04391
malus_domestica MD05G1031300.v1.1 MD05G1031400.v1.1 MD05G1031500.v1.1 MD08G1164400.v1.1 MD10G1032900.v1.1 MD10G1033000.v1.1 MD10G1033100.v1.1
prunus_persica Prupe.3G240700_v2.0.a1 Prupe.7G144600_v2.0.a1 Prupe.8G038500_v2.0.a1 Prupe.8G038500_v2.0.a1
pyrus_communis pycom05g02250 pycom05g02260 pycom05g02270 pycom05g02280 pycom08g14160 pycom10g02100 pycom10g02110 pycom10g02130
rosa_chinensis RchiOBHm_Chr1g0329481 RchiOBHm_Chr1g0329491 RchiOBHm_Chr1g0341531 RchiOBHm_Chr3g0464811 RchiOBHm_Chr3g0494701 RchiOBHm_Chr3g0497501 RchiOBHm_Chr4g0385841 RchiOBHm_Chr5g0061181 RchiOBHm_Chr6g0263001 RchiOBHm_Chr7g0193111 RchiOBHm_Chr7g0206281 RchiOBHm_Chr7g0206311
rosa_laevigata RLG00000018908 RLG00000028528 RLG00000028803 RLG00000029882 RLG00000029883 RLG00000030361
rosa_multiflora Rmu_co8196328.1_g000001 Rmu_co8259135.1_g000001 Rmu_co8269185.1_g000001 Rmu_sc0000076.1_g000019 Rmu_sc0000311.1_g000007 Rmu_sc0000429.1_g000038 Rmu_sc0000429.1_g000039 Rmu_sc0000429.1_g000040 Rmu_sc0000511.1_g000005 Rmu_sc0000539.1_g000054 Rmu_sc0000566.1_g000039 Rmu_sc0000805.1_g000032 Rmu_sc0000870.1_g000073 Rmu_sc0000870.1_g000074 Rmu_sc0001010.1_g000018 Rmu_sc0001083.1_g000013 Rmu_sc0001114.1_g000011 Rmu_sc0001702.1_g000027 Rmu_sc0001779.1_g000012 Rmu_sc0002923.1_g000036 Rmu_sc0003242.1_g000011 Rmu_sc0003291.1_g000036 Rmu_sc0003393.1_g000012 Rmu_sc0003872.1_g000016 Rmu_sc0003872.1_g000017 Rmu_sc0003872.1_g000018 Rmu_sc0004084.1_g000020 Rmu_sc0004386.1_g000005 Rmu_sc0004622.1_g000005 Rmu_sc0004742.1_g000021 Rmu_sc0004755.1_g000020 Rmu_sc0004805.1_g000036 Rmu_sc0005065.1_g000006 Rmu_sc0005177.1_g000004 Rmu_sc0006373.1_g000003 Rmu_sc0006373.1_g000004 Rmu_sc0007121.1_g000002 Rmu_sc0007943.1_g000003 Rmu_sc0010368.1_g000006 Rmu_sc0010543.1_g000001 Rmu_sc0012591.1_g000006 Rmu_sc0013504.1_g000009 Rmu_sc0015025.1_g000001 Rmu_sc0016170.1_g000001 Rmu_sc0017156.1_g000001 Rmu_sc0026439.1_g000001
rosa_roxburghii Rroxscaffold_175G00432280 Rroxscaffold_1G00030190 Rroxscaffold_1G00030880 Rroxscaffold_2G00090520 Rroxscaffold_3G00227940 Rroxscaffold_3G00233400 Rroxscaffold_3G00238500 Rroxscaffold_3G00251650 Rroxscaffold_4G00301570 Rroxscaffold_4G00321040 Rroxscaffold_5G00350880 Rroxscaffold_7G00184400
rosa_rugosa Rorug01G0080800 Rorug01G0080900 Rorug01G0193900 Rorug02G0275900 Rorug02G0275900 Rorug02G0275900 Rorug02G0305400 Rorug02G0311800 Rorug02G0350400 Rorug02G0381300 Rorug03G0136700 Rorug03G0181900 Rorug03G0268000 Rorug04G0301600 Rorug05G0175100 Rorug05G0250700 Rorug05G0298200 Rorug05G0596000 Rorug06G0029500 Rorug07G0094300 Rorug07G0094300 Rorug07G0095400 Rorug07G0140100
rosa_samantha Rh1AG099200 Rh1AG190500 Rh1BG078900 Rh1BG079000 Rh1BG079100 Rh1CG084600 Rh1CG084700 Rh1CG095300 Rh1CG175900 Rh1DG103300 Rh1DG150400 Rh2AG079300 Rh2AG272400 Rh2AG464800 Rh2AG507400 Rh2DG078300 Rh2DG078400 Rh3CG206900 Rh3CG295400 Rh3DG206800 Rh3DG356200 Rh4CG071500 Rh4CG179200 Rh4DG064700 Rh5CG362400 Rh7AG212300 Rh7AG226200 Rh7BG222200
rosa_wichuraiana Rw0G009990 Rw0G011260 Rw0G011270 Rw0G012910 Rw0G013740 Rw1G007740 Rw1G013050 Rw1G014230 Rw2G014270 Rw3G012720 Rw3G028110 Rw4G006630 Rw4G015270 Rw4G016160 Rw4G031380 Rw5G011440 Rw5G029180 Rw5G048360 Rw5G048430 Rw5G048780 Rw6G005250 Rw6G006390 Rw7G002840 Rw7G014080 Rw7G019650 Rw7G032790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 134
AccII CGCG 1 cut(s) 640
AciI CCGC 1 cut(s) 640
AclWI GGATC 2 cut(s) 1183, 1208
AcsI RAATTY 8 cut(s) 15, 39, 83, 136, 450, 770, 923, 1040
AfaI GTAC 6 cut(s) 151, 307, 326, 710, 748, 903
AfiI CCNNNNNNNGG 2 cut(s) 31, 1160
AflIII ACRYGT 1 cut(s) 788
AluBI AGCT 7 cut(s) 164, 188, 279, 686, 704, 1002, 1200
AluI AGCT 7 cut(s) 164, 188, 279, 686, 704, 1002, 1200
Alw26I GTCTC 1 cut(s) 57
AlwI GGATC 2 cut(s) 1183, 1208
AoxI GGCC 1 cut(s) 889
ApoI RAATTY 8 cut(s) 15, 39, 83, 136, 450, 770, 923, 1040
AspS9I GGNCC 1 cut(s) 889
AsuHPI GGTGA 2 cut(s) 490, 842
BanII GRGCYC 1 cut(s) 433
BbsI GAAGAC 1 cut(s) 385
BccI CCATC 3 cut(s) 34, 292, 1004
BclI TGATCA 3 cut(s) 214, 651, 988
BcoDI GTCTC 1 cut(s) 57
BfaI CTAG 3 cut(s) 341, 1136, 1197
BfuAI ACCTGC 1 cut(s) 134
BmgT120I GGNCC 1 cut(s) 889
BmsI GCATC 1 cut(s) 321
BpiI GAAGAC 1 cut(s) 385
BplI GAGNNNNNCTC 2 cut(s) 1051, 1083
BsaAI YACGTR 1 cut(s) 424
BsaJI CCNNGG 1 cut(s) 533
Bsc4I CCNNNNNNNGG 2 cut(s) 31, 1160
Bse3DI GCAATG 2 cut(s) 64, 932
BseDI CCNNGG 1 cut(s) 533
BseGI GGATG 3 cut(s) 250, 671, 1012
BseLI CCNNNNNNNGG 2 cut(s) 31, 1160
BseMI GCAATG 2 cut(s) 64, 932
BseMII CTCAG 3 cut(s) 696, 1088, 1118
Bsh1236I CGCG 1 cut(s) 640
BshFI GGCC 1 cut(s) 891
BslI CCNNNNNNNGG 2 cut(s) 31, 1160
BsmAI GTCTC 1 cut(s) 57
BsmI GAATGC 2 cut(s) 517, 1068
BsnI GGCC 1 cut(s) 891
Bsp1286I GDGCHC 1 cut(s) 433
Bsp1407I TGTACA 2 cut(s) 305, 901
Bsp143I GATC 6 cut(s) 214, 651, 980, 988, 1175, 1213
BspACI CCGC 1 cut(s) 640
BspANI GGCC 1 cut(s) 891
BspCNI CTCAG 3 cut(s) 697, 1087, 1117
BspFNI CGCG 1 cut(s) 640
BspHI TCATGA 1 cut(s) 661
BspMI ACCTGC 1 cut(s) 134
BspPI GGATC 2 cut(s) 1183, 1208
BsrDI GCAATG 2 cut(s) 64, 932
BsrGI TGTACA 2 cut(s) 305, 901
BssECI CCNNGG 1 cut(s) 533
BssMI GATC 6 cut(s) 214, 651, 980, 988, 1175, 1213
BssT1I CCWWGG 1 cut(s) 533
Bst4CI ACNGT 2 cut(s) 154, 590
Bst6I CTCTTC 2 cut(s) 408, 1128
BstAUI TGTACA 2 cut(s) 305, 901
BstBAI YACGTR 1 cut(s) 424
BstC8I GCNNGC 1 cut(s) 1000
BstDEI CTNAG 4 cut(s) 273, 705, 1074, 1104
BstENI CCTNNNNNAGG 1 cut(s) 1158
BstF5I GGATG 3 cut(s) 250, 671, 1012
BstFNI CGCG 1 cut(s) 640
BstKTI GATC 6 cut(s) 217, 654, 983, 991, 1178, 1216
BstMAI GTCTC 1 cut(s) 57
BstMBI GATC 6 cut(s) 214, 651, 980, 988, 1175, 1213
BstNSI RCATGY 1 cut(s) 792
BstSNI TACGTA 1 cut(s) 424
BstUI CGCG 1 cut(s) 640
BstV2I GAAGAC 1 cut(s) 385
BsuRI GGCC 1 cut(s) 891
BtsCI GGATG 3 cut(s) 250, 671, 1012
BtsIMutI CAGTG 1 cut(s) 503
BveI ACCTGC 1 cut(s) 134
Cac8I GCNNGC 1 cut(s) 1000
CciI TCATGA 1 cut(s) 661
Cfr13I GGNCC 1 cut(s) 889
Csp6I GTAC 6 cut(s) 150, 306, 325, 709, 747, 902
CviAII CATG 6 cut(s) 67, 397, 662, 783, 789, 992
CviQI GTAC 6 cut(s) 150, 306, 325, 709, 747, 902
DdeI CTNAG 4 cut(s) 273, 705, 1074, 1104
DpnI GATC 6 cut(s) 216, 653, 982, 990, 1177, 1215
DpnII GATC 6 cut(s) 214, 651, 980, 988, 1175, 1213
Eam1104I CTCTTC 2 cut(s) 408, 1128
EarI CTCTTC 2 cut(s) 408, 1128
Eco105I TACGTA 1 cut(s) 424
Eco130I CCWWGG 1 cut(s) 533
Eco24I GRGCYC 1 cut(s) 433
EcoNI CCTNNNNNAGG 1 cut(s) 1158
EcoRI GAATTC 1 cut(s) 1040
EcoT14I CCWWGG 1 cut(s) 533
EcoT38I GRGCYC 1 cut(s) 433
ErhI CCWWGG 1 cut(s) 533
FaeI CATG 6 cut(s) 70, 400, 665, 786, 792, 995
FatI CATG 6 cut(s) 66, 396, 661, 782, 788, 991
FauNDI CATATG 1 cut(s) 906
FbaI TGATCA 3 cut(s) 214, 651, 988
FokI GGATG 3 cut(s) 237, 658, 1019
FriOI GRGCYC 1 cut(s) 433
FspBI CTAG 3 cut(s) 341, 1136, 1197
HaeIII GGCC 1 cut(s) 891
Hin1II CATG 6 cut(s) 70, 400, 665, 786, 792, 995
HincII GTYRAC 1 cut(s) 231
HindII GTYRAC 1 cut(s) 231
HindIII AAGCTT 2 cut(s) 162, 684
HinfI GANTC 4 cut(s) 232, 354, 668, 1193
HphI GGTGA 2 cut(s) 490, 842
Hpy166II GTNNAC 3 cut(s) 231, 798, 902
Hpy188I TCNGA 3 cut(s) 51, 1039, 1077
Hpy188III TCNNGA 3 cut(s) 662, 825, 956
Hpy8I GTNNAC 3 cut(s) 231, 798, 902
HpyAV CCTTC 1 cut(s) 902
HpyCH4III ACNGT 2 cut(s) 154, 590
HpyCH4IV ACGT 2 cut(s) 423, 745
HpyCH4V TGCA 6 cut(s) 57, 143, 400, 782, 864, 937
HpyF3I CTNAG 4 cut(s) 273, 705, 1074, 1104
HpySE526I ACGT 2 cut(s) 423, 745
Hsp92II CATG 6 cut(s) 70, 400, 665, 786, 792, 995
Ksp22I TGATCA 3 cut(s) 214, 651, 988
Kzo9I GATC 6 cut(s) 214, 651, 980, 988, 1175, 1213
LpnPI CCDG 3 cut(s) 129, 174, 941
LweI GCATC 1 cut(s) 321
MaeI CTAG 3 cut(s) 341, 1136, 1197
MaeII ACGT 2 cut(s) 423, 745
MaeIII GTNAC 3 cut(s) 355, 580, 775
MalI GATC 6 cut(s) 216, 653, 982, 990, 1177, 1215
MboI GATC 6 cut(s) 214, 651, 980, 988, 1175, 1213
MfeI CAATTG 2 cut(s) 261, 938
MhlI GDGCHC 1 cut(s) 433
MlyI GAGTC 2 cut(s) 226, 363
MmeI TCCRAC 1 cut(s) 867
MseI TTAA 4 cut(s) 239, 678, 761, 1050
MslI CAYNNNNRTG 3 cut(s) 787, 859, 884
MunI CAATTG 2 cut(s) 261, 938
Mva1269I GAATGC 2 cut(s) 517, 1068
MvnI CGCG 1 cut(s) 640
NdeI CATATG 1 cut(s) 906
NdeII GATC 6 cut(s) 214, 651, 980, 988, 1175, 1213
NlaIII CATG 6 cut(s) 70, 400, 665, 786, 792, 995
NmuCI GTSAC 1 cut(s) 355
NspI RCATGY 1 cut(s) 792
PagI TCATGA 1 cut(s) 661
PciI ACATGT 1 cut(s) 788
PctI GAATGC 2 cut(s) 517, 1068
PfeI GAWTC 2 cut(s) 668, 1193
PleI GAGTC 2 cut(s) 226, 362
PpsI GAGTC 2 cut(s) 226, 362
Ppu21I YACGTR 1 cut(s) 424
PscI ACATGT 1 cut(s) 788
PspPI GGNCC 1 cut(s) 889
RsaI GTAC 6 cut(s) 151, 307, 326, 710, 748, 903
RsaNI GTAC 6 cut(s) 150, 306, 325, 709, 747, 902
RseI CAYNNNNRTG 3 cut(s) 787, 859, 884
SaqAI TTAA 4 cut(s) 239, 678, 761, 1050
Sau3AI GATC 6 cut(s) 214, 651, 980, 988, 1175, 1213
Sau96I GGNCC 1 cut(s) 889
SchI GAGTC 2 cut(s) 226, 363
SduI GDGCHC 1 cut(s) 433
SfaNI GCATC 1 cut(s) 321
SmiMI CAYNNNNRTG 3 cut(s) 787, 859, 884
SnaBI TACGTA 1 cut(s) 424
SsiI CCGC 1 cut(s) 640
SspI AATATT 1 cut(s) 523
SspMI CTAG 3 cut(s) 341, 1136, 1197
StyI CCWWGG 1 cut(s) 533
TaaI ACNGT 2 cut(s) 154, 590
TaiI ACGT 2 cut(s) 426, 748
TatI WGTACW 4 cut(s) 305, 324, 708, 901
TfiI GAWTC 2 cut(s) 668, 1193
Tru1I TTAA 4 cut(s) 239, 678, 761, 1050
Tru9I TTAA 4 cut(s) 239, 678, 761, 1050
TscAI CASTG 1 cut(s) 510
TseFI GTSAC 1 cut(s) 355
Tsp45I GTSAC 1 cut(s) 355
TspRI CASTG 1 cut(s) 510
XagI CCTNNNNNAGG 1 cut(s) 1158
XapI RAATTY 8 cut(s) 15, 39, 83, 136, 450, 770, 923, 1040
XceI RCATGY 1 cut(s) 792
XspI CTAG 3 cut(s) 341, 1136, 1197
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.