FvH4_1g20063

protein FAR1-RELATED SEQUENCE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0000143
Physical Location & Seq
Forward (+)
12258264 .. 12259928
1665 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g20063.t1

Sequence Viewer

Length: 984 bp
ATGAAAGCAATAGAAGTTGAGTTCCCGATGACTCCTAATCTTTTGTGCATATGGCATAGTCAGAAAAATATTTGTGCACATTGTAAGGGTAAGTTTAGGGAAGAGGCAGATTGGGTTGTTTTTTTGTCTTCTTGGAATACCTTACTGAAATCTTGGAATGTGTCAACATTTAATGAAGCTTGGAATCGTTTTCAAATTGAGTATAAAGATTATGCTTCAGTTCTGACTTATATTGAAGATATTTGGCTTCCATGGAAAGAGAGATTTGTATATGCATGGACTGGGCAGACTTCACATTTCGGTAATAATGTTACTTCTAGAGTTGAAGGCGCACATGCAACCATAAAGAGATACCTTCATGTTTCGACTGGTGGTCTCCGTGAAGTGAAGGAAATCATTTGTCTTGCTATTGAGAATCAATTTCAGGAAATTAGAACTCAGCTTGCAAGTGAGAAAATTGGTATTCCTCAAAAGCTTTGCATCCCTTTCTTTAATGAGACGAGGATTGACACAAGAACTTTCCCTAGTGATCAACATGCAAGCTTGGATCATGAAGATTCTCTCTGTAATCTTTTATCTGAGATTAAAGAGAAGTATGAAAAACAACCGTTGCAAAAAGAGAATACCCTAAGGCAACTTTCTCATATTCTTAGTGCATCTTGTCCCTTACTTTTTGAACCTACTATTCAACCTCATAAAGGTTGTCCGGTGGGATCAACTAAAAGAAATGAAATTAATTCTACAAAGCAGGATGCCTCATACTTTGAGATAGTGGACAAAACACCTCGAAAATGTAGAGGTTGTGGTAATACCGGCCATTATTGTAATAAATGTCCATCTATCAACAAGTCTGCTGAACCAAATATCAGTTACAAGTACACTAAACCATCTTCTTTACCTTTCCTCTTAGCACTTGAAGAAGAGCCCCTGCTGCTTAGTTGCAAATACAAACTAGATTTGACCGGACAAATCAAGGAGTCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE

Protein Analysis

328

Amino Acids

37.68

Weight (kDa)

7.9

Isoelectric Point (pI)

49.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000143)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G76710 AT1G76710 AT1G76710 AT1G76710
fragaria_vesca FvH4_1g20063 FvH4_2g15231 FvH4_3g04011 FvH4_3g28681 FvH4_4g01411 FvH4_4g10181 FvH4_4g15922 FvH4_4g16651 FvH4_4g16652 FvH4_5g13892 FvH4_5g13893 FvH4_5g20623 FvH4_5g20623 FvH4_5g20623 FvH4_5g20623 FvH4_5g25511 FvH4_6g12551 FvH4_6g12552 FvH4_6g38841 FvH4_7g04391
malus_domestica MD05G1031300.v1.1 MD05G1031400.v1.1 MD05G1031500.v1.1 MD08G1164400.v1.1 MD10G1032900.v1.1 MD10G1033000.v1.1 MD10G1033100.v1.1
prunus_persica Prupe.3G240700_v2.0.a1 Prupe.7G144600_v2.0.a1 Prupe.8G038500_v2.0.a1 Prupe.8G038500_v2.0.a1
pyrus_communis pycom05g02250 pycom05g02260 pycom05g02270 pycom05g02280 pycom08g14160 pycom10g02100 pycom10g02110 pycom10g02130
rosa_chinensis RchiOBHm_Chr1g0329481 RchiOBHm_Chr1g0329491 RchiOBHm_Chr1g0341531 RchiOBHm_Chr3g0464811 RchiOBHm_Chr3g0494701 RchiOBHm_Chr3g0497501 RchiOBHm_Chr4g0385841 RchiOBHm_Chr5g0061181 RchiOBHm_Chr6g0263001 RchiOBHm_Chr7g0193111 RchiOBHm_Chr7g0206281 RchiOBHm_Chr7g0206311
rosa_laevigata RLG00000018908 RLG00000028528 RLG00000028803 RLG00000029882 RLG00000029883 RLG00000030361
rosa_multiflora Rmu_co8196328.1_g000001 Rmu_co8259135.1_g000001 Rmu_co8269185.1_g000001 Rmu_sc0000076.1_g000019 Rmu_sc0000311.1_g000007 Rmu_sc0000429.1_g000038 Rmu_sc0000429.1_g000039 Rmu_sc0000429.1_g000040 Rmu_sc0000511.1_g000005 Rmu_sc0000539.1_g000054 Rmu_sc0000566.1_g000039 Rmu_sc0000805.1_g000032 Rmu_sc0000870.1_g000073 Rmu_sc0000870.1_g000074 Rmu_sc0001010.1_g000018 Rmu_sc0001083.1_g000013 Rmu_sc0001114.1_g000011 Rmu_sc0001702.1_g000027 Rmu_sc0001779.1_g000012 Rmu_sc0002923.1_g000036 Rmu_sc0003242.1_g000011 Rmu_sc0003291.1_g000036 Rmu_sc0003393.1_g000012 Rmu_sc0003872.1_g000016 Rmu_sc0003872.1_g000017 Rmu_sc0003872.1_g000018 Rmu_sc0004084.1_g000020 Rmu_sc0004386.1_g000005 Rmu_sc0004622.1_g000005 Rmu_sc0004742.1_g000021 Rmu_sc0004755.1_g000020 Rmu_sc0004805.1_g000036 Rmu_sc0005065.1_g000006 Rmu_sc0005177.1_g000004 Rmu_sc0006373.1_g000003 Rmu_sc0006373.1_g000004 Rmu_sc0007121.1_g000002 Rmu_sc0007943.1_g000003 Rmu_sc0010368.1_g000006 Rmu_sc0010543.1_g000001 Rmu_sc0012591.1_g000006 Rmu_sc0013504.1_g000009 Rmu_sc0015025.1_g000001 Rmu_sc0016170.1_g000001 Rmu_sc0017156.1_g000001 Rmu_sc0026439.1_g000001
rosa_roxburghii Rroxscaffold_175G00432280 Rroxscaffold_1G00030190 Rroxscaffold_1G00030880 Rroxscaffold_2G00090520 Rroxscaffold_3G00227940 Rroxscaffold_3G00233400 Rroxscaffold_3G00238500 Rroxscaffold_3G00251650 Rroxscaffold_4G00301570 Rroxscaffold_4G00321040 Rroxscaffold_5G00350880 Rroxscaffold_7G00184400
rosa_rugosa Rorug01G0080800 Rorug01G0080900 Rorug01G0193900 Rorug02G0275900 Rorug02G0275900 Rorug02G0275900 Rorug02G0305400 Rorug02G0311800 Rorug02G0350400 Rorug02G0381300 Rorug03G0136700 Rorug03G0181900 Rorug03G0268000 Rorug04G0301600 Rorug05G0175100 Rorug05G0250700 Rorug05G0298200 Rorug05G0596000 Rorug06G0029500 Rorug07G0094300 Rorug07G0094300 Rorug07G0095400 Rorug07G0140100
rosa_samantha Rh1AG099200 Rh1AG190500 Rh1BG078900 Rh1BG079000 Rh1BG079100 Rh1CG084600 Rh1CG084700 Rh1CG095300 Rh1CG175900 Rh1DG103300 Rh1DG150400 Rh2AG079300 Rh2AG272400 Rh2AG464800 Rh2AG507400 Rh2DG078300 Rh2DG078400 Rh3CG206900 Rh3CG295400 Rh3DG206800 Rh3DG356200 Rh4CG071500 Rh4CG179200 Rh4DG064700 Rh5CG362400 Rh7AG212300 Rh7AG226200 Rh7BG222200
rosa_wichuraiana Rw0G009990 Rw0G011260 Rw0G011270 Rw0G012910 Rw0G013740 Rw1G007740 Rw1G013050 Rw1G014230 Rw2G014270 Rw3G012720 Rw3G028110 Rw4G006630 Rw4G015270 Rw4G016160 Rw4G031380 Rw5G011440 Rw5G029180 Rw5G048360 Rw5G048430 Rw5G048780 Rw6G005250 Rw6G006390 Rw7G002840 Rw7G014080 Rw7G019650 Rw7G032790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 555, 721
AcoI YGGCCR 1 cut(s) 814
AcuI CTGAAG 1 cut(s) 201
AfaI GTAC 1 cut(s) 878
AfiI CCNNNNNNNGG 1 cut(s) 698
AgsI TTSAA 6 cut(s) 194, 236, 326, 677, 689, 917
AhdI GACNNNNNGTC 1 cut(s) 372
AluBI AGCT 4 cut(s) 179, 442, 475, 543
AluI AGCT 4 cut(s) 179, 442, 475, 543
Alw21I GWGCWC 1 cut(s) 79
Alw26I GTCTC 2 cut(s) 380, 491
Alw44I GTGCAC 1 cut(s) 75
AlwI GGATC 2 cut(s) 555, 721
AoxI GGCC 1 cut(s) 814
ApaLI GTGCAC 1 cut(s) 75
ApeKI GCWGC 1 cut(s) 931
AseI ATTAAT 1 cut(s) 735
AspLEI GCGC 1 cut(s) 332
AxyI CCTNAGG 1 cut(s) 629
BaeGI GKGCMC 1 cut(s) 79
BanII GRGCYC 1 cut(s) 927
BbsI GAAGAC 1 cut(s) 120
Bbv12I GWGCWC 1 cut(s) 79
BbvI GCAGC 1 cut(s) 918
BccI CCATC 2 cut(s) 844, 895
BclI TGATCA 1 cut(s) 529
BcoDI GTCTC 2 cut(s) 380, 491
BfaI CTAG 3 cut(s) 318, 525, 953
BisI GCNGC 1 cut(s) 932
BlsI GCNGC 1 cut(s) 933
BmeRI GACNNNNNGTC 1 cut(s) 372
BmrI ACTGGG 1 cut(s) 291
BmsI GCATC 3 cut(s) 489, 665, 742
BmuI ACTGGG 1 cut(s) 291
BpiI GAAGAC 1 cut(s) 120
BsaI GGTCTC 1 cut(s) 380
BsaJI CCNNGG 1 cut(s) 251
BsaWI WCCGGW 2 cut(s) 706, 962
Bsc4I CCNNNNNNNGG 1 cut(s) 698
Bse118I RCCGGY 1 cut(s) 812
Bse1I ACTGG 2 cut(s) 286, 373
Bse21I CCTNAGG 1 cut(s) 629
BseDI CCNNGG 1 cut(s) 251
BseGI GGATG 2 cut(s) 480, 757
BseLI CCNNNNNNNGG 1 cut(s) 698
BseMII CTCAG 2 cut(s) 452, 570
BseNI ACTGG 2 cut(s) 286, 373
BseSI GKGCMC 1 cut(s) 79
BseXI GCAGC 1 cut(s) 918
BshFI GGCC 1 cut(s) 816
BsiHKAI GWGCWC 1 cut(s) 79
BsiSI CCGG 3 cut(s) 707, 813, 963
BslFI GGGAC 1 cut(s) 648
BslI CCNNNNNNNGG 1 cut(s) 698
BsmAI GTCTC 2 cut(s) 380, 491
BsmBI CGTCTC 1 cut(s) 491
BsmFI GGGAC 1 cut(s) 648
BsnI GGCC 1 cut(s) 816
Bso31I GGTCTC 1 cut(s) 380
Bsp1286I GDGCHC 2 cut(s) 79, 927
Bsp143I GATC 3 cut(s) 529, 547, 713
Bsp19I CCATGG 1 cut(s) 251
BspANI GGCC 1 cut(s) 816
BspCNI CTCAG 2 cut(s) 451, 571
BspHI TCATGA 1 cut(s) 550
BspPI GGATC 2 cut(s) 555, 721
BspQI GCTCTTC 1 cut(s) 915
BspTNI GGTCTC 1 cut(s) 380
BsrFI RCCGGY 1 cut(s) 812
BsrI ACTGG 2 cut(s) 286, 373
BssAI RCCGGY 1 cut(s) 812
BssECI CCNNGG 1 cut(s) 251
BssMI GATC 3 cut(s) 529, 547, 713
BssT1I CCWWGG 1 cut(s) 251
Bst4CI ACNGT 1 cut(s) 609
Bst6I CTCTTC 2 cut(s) 96, 915
BstC8I GCNNGC 2 cut(s) 444, 541
BstDEI CTNAG 6 cut(s) 438, 579, 629, 650, 907, 935
BstDSI CCRYGG 1 cut(s) 251
BstENI CCTNNNNNAGG 1 cut(s) 696
BstF5I GGATG 2 cut(s) 480, 757
BstHHI GCGC 1 cut(s) 332
BstKTI GATC 3 cut(s) 532, 550, 716
BstMAI GTCTC 2 cut(s) 380, 491
BstMBI GATC 3 cut(s) 529, 547, 713
BstMWI GCNNNNNNNGC 1 cut(s) 931
BstNSI RCATGY 2 cut(s) 338, 539
BstSLI GKGCMC 1 cut(s) 79
BstV1I GCAGC 1 cut(s) 918
BstV2I GAAGAC 1 cut(s) 120
Bsu36I CCTNAGG 1 cut(s) 629
BsuRI GGCC 1 cut(s) 816
BtgI CCRYGG 1 cut(s) 251
BtsCI GGATG 2 cut(s) 480, 757
Cac8I GCNNGC 2 cut(s) 444, 541
CciI TCATGA 1 cut(s) 550
CfoI GCGC 1 cut(s) 332
Cfr10I RCCGGY 1 cut(s) 812
Csp6I GTAC 1 cut(s) 877
CviAII CATG 6 cut(s) 252, 276, 335, 359, 536, 551
CviJI RGCY 7 cut(s) 179, 247, 442, 475, 543, 816, 925
CviKI_1 RGCY 7 cut(s) 179, 247, 442, 475, 543, 816, 925
CviQI GTAC 1 cut(s) 877
DdeI CTNAG 6 cut(s) 438, 579, 629, 650, 907, 935
DpnI GATC 3 cut(s) 531, 549, 715
DpnII GATC 3 cut(s) 529, 547, 713
DriI GACNNNNNGTC 1 cut(s) 372
EaeI YGGCCR 1 cut(s) 814
Eam1104I CTCTTC 2 cut(s) 96, 915
Eam1105I GACNNNNNGTC 1 cut(s) 372
EarI CTCTTC 2 cut(s) 96, 915
Eco130I CCWWGG 1 cut(s) 251
Eco24I GRGCYC 1 cut(s) 927
Eco31I GGTCTC 1 cut(s) 380
Eco57I CTGAAG 1 cut(s) 201
Eco81I CCTNAGG 1 cut(s) 629
EcoNI CCTNNNNNAGG 1 cut(s) 696
EcoT14I CCWWGG 1 cut(s) 251
EcoT22I ATGCAT 1 cut(s) 277
EcoT38I GRGCYC 1 cut(s) 927
ErhI CCWWGG 1 cut(s) 251
Esp3I CGTCTC 1 cut(s) 491
FaeI CATG 6 cut(s) 255, 279, 338, 362, 539, 554
FaqI GGGAC 1 cut(s) 648
FatI CATG 6 cut(s) 251, 275, 334, 358, 535, 550
FauNDI CATATG 1 cut(s) 50
FbaI TGATCA 1 cut(s) 529
Fnu4HI GCNGC 1 cut(s) 932
FokI GGATG 2 cut(s) 467, 764
FriOI GRGCYC 1 cut(s) 927
Fsp4HI GCNGC 1 cut(s) 932
FspBI CTAG 3 cut(s) 318, 525, 953
GlaI GCGC 1 cut(s) 331
GluI GCNGC 1 cut(s) 932
HaeIII GGCC 1 cut(s) 816
HapII CCGG 3 cut(s) 707, 813, 963
HhaI GCGC 1 cut(s) 332
Hin1II CATG 6 cut(s) 255, 279, 338, 362, 539, 554
Hin6I GCGC 1 cut(s) 330
HinP1I GCGC 1 cut(s) 330
HincII GTYRAC 1 cut(s) 165
HindII GTYRAC 1 cut(s) 165
HindIII AAGCTT 3 cut(s) 177, 473, 541
HinfI GANTC 5 cut(s) 31, 184, 415, 557, 977
HpaII CCGG 3 cut(s) 707, 813, 963
Hpy166II GTNNAC 4 cut(s) 77, 165, 775, 879
Hpy188I TCNGA 3 cut(s) 63, 225, 580
Hpy188III TCNNGA 4 cut(s) 25, 318, 425, 551
Hpy8I GTNNAC 4 cut(s) 77, 165, 775, 879
HpyAV CCTTC 3 cut(s) 320, 365, 382
HpyCH4III ACNGT 1 cut(s) 609
HpyF10VI GCNNNNNNNGC 1 cut(s) 931
HpyF3I CTNAG 6 cut(s) 438, 579, 629, 650, 907, 935
Hsp92II CATG 6 cut(s) 255, 279, 338, 362, 539, 554
HspAI GCGC 1 cut(s) 330
Ksp22I TGATCA 1 cut(s) 529
Kzo9I GATC 3 cut(s) 529, 547, 713
LguI GCTCTTC 1 cut(s) 915
LpnPI CCDG 8 cut(s) 267, 354, 410, 720, 734, 826, 941, 976
Lsp1109I GCAGC 1 cut(s) 918
LweI GCATC 3 cut(s) 489, 665, 742
MaeI CTAG 3 cut(s) 318, 525, 953
MaeIII GTNAC 2 cut(s) 310, 869
MalI GATC 3 cut(s) 531, 549, 715
MboI GATC 3 cut(s) 529, 547, 713
MboII GAAGA 7 cut(s) 113, 120, 248, 566, 882, 929, 932
MhlI GDGCHC 2 cut(s) 79, 927
MluCI AATT 6 cut(s) 195, 419, 429, 456, 732, 736
MlyI GAGTC 1 cut(s) 25
MnlI CCTC 8 cut(s) 97, 477, 495, 702, 766, 791, 795, 914
Mph1103I ATGCAT 1 cut(s) 277
MseI TTAA 4 cut(s) 171, 492, 585, 735
MspI CCGG 3 cut(s) 707, 813, 963
MwoI GCNNNNNNNGC 1 cut(s) 931
NcoI CCATGG 1 cut(s) 251
NdeI CATATG 1 cut(s) 50
NdeII GATC 3 cut(s) 529, 547, 713
NlaIII CATG 6 cut(s) 255, 279, 338, 362, 539, 554
NsiI ATGCAT 1 cut(s) 277
NspI RCATGY 2 cut(s) 338, 539
PagI TCATGA 1 cut(s) 550
PciSI GCTCTTC 1 cut(s) 915
PfeI GAWTC 3 cut(s) 184, 415, 557
PkrI GCNGC 1 cut(s) 933
PleI GAGTC 1 cut(s) 25
PpsI GAGTC 1 cut(s) 25
PshBI ATTAAT 1 cut(s) 735
RsaI GTAC 1 cut(s) 878
RsaNI GTAC 1 cut(s) 877
SapI GCTCTTC 1 cut(s) 915
SaqAI TTAA 4 cut(s) 171, 492, 585, 735
SatI GCNGC 1 cut(s) 932
Sau3AI GATC 3 cut(s) 529, 547, 713
SchI GAGTC 1 cut(s) 25
SduI GDGCHC 2 cut(s) 79, 927
SfaNI GCATC 3 cut(s) 489, 665, 742
Sse9I AATT 6 cut(s) 195, 419, 429, 456, 732, 736
SspI AATATT 1 cut(s) 70
SspMI CTAG 3 cut(s) 318, 525, 953
StyI CCWWGG 1 cut(s) 251
TaaI ACNGT 1 cut(s) 609
TaqI TCGA 2 cut(s) 365, 787
TasI AATT 6 cut(s) 195, 419, 429, 456, 732, 736
TatI WGTACW 1 cut(s) 876
TfiI GAWTC 3 cut(s) 184, 415, 557
Tru1I TTAA 4 cut(s) 171, 492, 585, 735
Tru9I TTAA 4 cut(s) 171, 492, 585, 735
TseI GCWGC 1 cut(s) 931
TspDTI ATGAA 6 cut(s) 17, 189, 347, 567, 612, 744
TspGWI ACGGA 1 cut(s) 368
VneI GTGCAC 1 cut(s) 75
VspI ATTAAT 1 cut(s) 735
XagI CCTNNNNNAGG 1 cut(s) 696
XbaI TCTAGA 1 cut(s) 317
XceI RCATGY 2 cut(s) 338, 539
XspI CTAG 3 cut(s) 318, 525, 953
Zsp2I ATGCAT 1 cut(s) 277
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.