FvH4_5g13892

protein FAR1-RELATED SEQUENCE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0000143
Physical Location & Seq
Reverse (-)
7857190 .. 7858203
1014 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g13892.t1

Sequence Viewer

Length: 759 bp
ATGGAAGAACATATTGGTCCTTCACTAATTCCCCCTACTAACAATGAGGGTCTGCGAACACCACCAAGGATGTCAAAAATGGCAGAAGGTCCCAGGGTACTTAAACAAAAGACCAAAGTTGAAGATATGTTACCATTTATTTTGGGAGCAAAGGATGTAAGAGATGATGGAAATTGTGGTTTTAGAGCCATAGCTGATTTTATGGGCTATGGTGAGAATAACTGGCGCCGTGTACGTAAAGAGTTGTTACAAGAGTTTCATCGTAATAACCTTACATACCAATTATTATTCCGACATGCAGAGCGACTGGAGGAGGTGGAGAGAAGATTAGATTATTTTGATTACTTTCCACCTCGAGATTATTGGTTCTTAATTCCAGATATGGGATACATTGTAGCAAATTGTTACAATGTCGTGTTGATGCATTTTGGGAAGCATTTGATGACATGCTTCACATTCTTGCCAATGGATAGCACCCCACTTTCTATGGTTGATCGGCGTGAAATTTCTCTTGGTTTTGTCAATACAAATCACTTTGTCCAGGTTCATCTGACGCCATTTCATCCTATGCCATTGCCACCTATTGTCGATGGTTGGTTCAAGCATTCTCTACTTCTCGCAAACGGATGGCTACCTCCTTATAGTGATCGCCTTCATGCTGGCAAAGATATTTTTGATACCGATTATCCAGATGATGAGAAAATAGTAGGTGTTCATTGTCCAATCGATGAAAAATTTGTTACTCTTGATAGTGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AFT FAR1 MULE

Protein Analysis

253

Amino Acids

29.44

Weight (kDa)

5.76

Isoelectric Point (pI)

35.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000143)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G76710 AT1G76710 AT1G76710 AT1G76710
fragaria_vesca FvH4_1g20063 FvH4_2g15231 FvH4_3g04011 FvH4_3g28681 FvH4_4g01411 FvH4_4g10181 FvH4_4g15922 FvH4_4g16651 FvH4_4g16652 FvH4_5g13892 FvH4_5g13893 FvH4_5g20623 FvH4_5g20623 FvH4_5g20623 FvH4_5g20623 FvH4_5g25511 FvH4_6g12551 FvH4_6g12552 FvH4_6g38841 FvH4_7g04391
malus_domestica MD05G1031300.v1.1 MD05G1031400.v1.1 MD05G1031500.v1.1 MD08G1164400.v1.1 MD10G1032900.v1.1 MD10G1033000.v1.1 MD10G1033100.v1.1
prunus_persica Prupe.3G240700_v2.0.a1 Prupe.7G144600_v2.0.a1 Prupe.8G038500_v2.0.a1 Prupe.8G038500_v2.0.a1
pyrus_communis pycom05g02250 pycom05g02260 pycom05g02270 pycom05g02280 pycom08g14160 pycom10g02100 pycom10g02110 pycom10g02130
rosa_chinensis RchiOBHm_Chr1g0329481 RchiOBHm_Chr1g0329491 RchiOBHm_Chr1g0341531 RchiOBHm_Chr3g0464811 RchiOBHm_Chr3g0494701 RchiOBHm_Chr3g0497501 RchiOBHm_Chr4g0385841 RchiOBHm_Chr5g0061181 RchiOBHm_Chr6g0263001 RchiOBHm_Chr7g0193111 RchiOBHm_Chr7g0206281 RchiOBHm_Chr7g0206311
rosa_laevigata RLG00000018908 RLG00000028528 RLG00000028803 RLG00000029882 RLG00000029883 RLG00000030361
rosa_multiflora Rmu_co8196328.1_g000001 Rmu_co8259135.1_g000001 Rmu_co8269185.1_g000001 Rmu_sc0000076.1_g000019 Rmu_sc0000311.1_g000007 Rmu_sc0000429.1_g000038 Rmu_sc0000429.1_g000039 Rmu_sc0000429.1_g000040 Rmu_sc0000511.1_g000005 Rmu_sc0000539.1_g000054 Rmu_sc0000566.1_g000039 Rmu_sc0000805.1_g000032 Rmu_sc0000870.1_g000073 Rmu_sc0000870.1_g000074 Rmu_sc0001010.1_g000018 Rmu_sc0001083.1_g000013 Rmu_sc0001114.1_g000011 Rmu_sc0001702.1_g000027 Rmu_sc0001779.1_g000012 Rmu_sc0002923.1_g000036 Rmu_sc0003242.1_g000011 Rmu_sc0003291.1_g000036 Rmu_sc0003393.1_g000012 Rmu_sc0003872.1_g000016 Rmu_sc0003872.1_g000017 Rmu_sc0003872.1_g000018 Rmu_sc0004084.1_g000020 Rmu_sc0004386.1_g000005 Rmu_sc0004622.1_g000005 Rmu_sc0004742.1_g000021 Rmu_sc0004755.1_g000020 Rmu_sc0004805.1_g000036 Rmu_sc0005065.1_g000006 Rmu_sc0005177.1_g000004 Rmu_sc0006373.1_g000003 Rmu_sc0006373.1_g000004 Rmu_sc0007121.1_g000002 Rmu_sc0007943.1_g000003 Rmu_sc0010368.1_g000006 Rmu_sc0010543.1_g000001 Rmu_sc0012591.1_g000006 Rmu_sc0013504.1_g000009 Rmu_sc0015025.1_g000001 Rmu_sc0016170.1_g000001 Rmu_sc0017156.1_g000001 Rmu_sc0026439.1_g000001
rosa_roxburghii Rroxscaffold_175G00432280 Rroxscaffold_1G00030190 Rroxscaffold_1G00030880 Rroxscaffold_2G00090520 Rroxscaffold_3G00227940 Rroxscaffold_3G00233400 Rroxscaffold_3G00238500 Rroxscaffold_3G00251650 Rroxscaffold_4G00301570 Rroxscaffold_4G00321040 Rroxscaffold_5G00350880 Rroxscaffold_7G00184400
rosa_rugosa Rorug01G0080800 Rorug01G0080900 Rorug01G0193900 Rorug02G0275900 Rorug02G0275900 Rorug02G0275900 Rorug02G0305400 Rorug02G0311800 Rorug02G0350400 Rorug02G0381300 Rorug03G0136700 Rorug03G0181900 Rorug03G0268000 Rorug04G0301600 Rorug05G0175100 Rorug05G0250700 Rorug05G0298200 Rorug05G0596000 Rorug06G0029500 Rorug07G0094300 Rorug07G0094300 Rorug07G0095400 Rorug07G0140100
rosa_samantha Rh1AG099200 Rh1AG190500 Rh1BG078900 Rh1BG079000 Rh1BG079100 Rh1CG084600 Rh1CG084700 Rh1CG095300 Rh1CG175900 Rh1DG103300 Rh1DG150400 Rh2AG079300 Rh2AG272400 Rh2AG464800 Rh2AG507400 Rh2DG078300 Rh2DG078400 Rh3CG206900 Rh3CG295400 Rh3DG206800 Rh3DG356200 Rh4CG071500 Rh4CG179200 Rh4DG064700 Rh5CG362400 Rh7AG212300 Rh7AG226200 Rh7BG222200
rosa_wichuraiana Rw0G009990 Rw0G011260 Rw0G011270 Rw0G012910 Rw0G013740 Rw1G007740 Rw1G013050 Rw1G014230 Rw2G014270 Rw3G012720 Rw3G028110 Rw4G006630 Rw4G015270 Rw4G016160 Rw4G031380 Rw5G011440 Rw5G029180 Rw5G048360 Rw5G048430 Rw5G048780 Rw6G005250 Rw6G006390 Rw7G002840 Rw7G014080 Rw7G019650 Rw7G032790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 225
AcsI RAATTY 2 cut(s) 504, 734
AcyI GRCGYC 2 cut(s) 226, 554
AfaI GTAC 2 cut(s) 99, 234
AfiI CCNNNNNNNGG 1 cut(s) 383
AgsI TTSAA 2 cut(s) 122, 601
AjnI CCWGG 2 cut(s) 92, 540
AjuI GAANNNNNNNTTGG 3 cut(s) 29, 495, 527
AluBI AGCT 1 cut(s) 194
AluI AGCT 1 cut(s) 194
Ama87I CYCGRG 1 cut(s) 354
ApoI RAATTY 2 cut(s) 504, 734
AspLEI GCGC 1 cut(s) 228
AspS9I GGNCC 2 cut(s) 17, 89
AsuHPI GGTGA 1 cut(s) 224
AvaI CYCGRG 1 cut(s) 354
AvaII GGWCC 2 cut(s) 17, 89
BanI GGYRCC 1 cut(s) 225
BarI GAAGNNNNNNTAC 2 cut(s) 114, 146
BccI CCATC 3 cut(s) 161, 584, 621
BceAI ACGGC 1 cut(s) 213
BciT130I CCWGG 2 cut(s) 94, 542
BciVI GTATCC 1 cut(s) 380
BfoI RGCGCY 1 cut(s) 229
BfuI GTATCC 1 cut(s) 380
Bme1390I CCNGG 2 cut(s) 94, 542
Bme18I GGWCC 2 cut(s) 17, 89
BmeT110I CYCGRG 1 cut(s) 354
BmgT120I GGNCC 2 cut(s) 17, 89
BmiI GGNNCC 2 cut(s) 91, 227
BmrFI CCNGG 2 cut(s) 94, 542
BmsI GCATC 1 cut(s) 411
BpmI CTGGAG 1 cut(s) 329
Bsa29I ATCGAT 1 cut(s) 726
BsaAI YACGTR 1 cut(s) 236
BsaHI GRCGYC 2 cut(s) 226, 554
BsaJI CCNNGG 3 cut(s) 65, 92, 93
Bsc4I CCNNNNNNNGG 1 cut(s) 383
Bse1I ACTGG 2 cut(s) 227, 312
Bse3DI GCAATG 1 cut(s) 572
BseBI CCWGG 2 cut(s) 94, 542
BseCI ATCGAT 1 cut(s) 726
BseDI CCNNGG 3 cut(s) 65, 92, 93
BseGI GGATG 4 cut(s) 75, 160, 562, 632
BseLI CCNNNNNNNGG 1 cut(s) 383
BseMI GCAATG 1 cut(s) 572
BseNI ACTGG 2 cut(s) 227, 312
BseRI GAGGAG 1 cut(s) 326
BshNI GGYRCC 1 cut(s) 225
BshVI ATCGAT 1 cut(s) 726
BsiHKCI CYCGRG 1 cut(s) 354
BslFI GGGAC 1 cut(s) 75
BslI CCNNNNNNNGG 1 cut(s) 383
BsmFI GGGAC 1 cut(s) 75
BsmI GAATGC 1 cut(s) 604
BsoBI CYCGRG 1 cut(s) 354
Bsp143I GATC 2 cut(s) 493, 646
BspDI ATCGAT 1 cut(s) 726
BspLI GGNNCC 2 cut(s) 91, 227
BspT107I GGYRCC 1 cut(s) 225
BsrDI GCAATG 1 cut(s) 572
BsrI ACTGG 2 cut(s) 227, 312
BssECI CCNNGG 3 cut(s) 65, 92, 93
BssMI GATC 2 cut(s) 493, 646
BssNI GRCGYC 2 cut(s) 226, 554
BssT1I CCWWGG 1 cut(s) 65
Bst2UI CCWGG 2 cut(s) 94, 542
BstACI GRCGYC 2 cut(s) 226, 554
BstBAI YACGTR 1 cut(s) 236
BstC8I GCNNGC 1 cut(s) 661
BstF5I GGATG 4 cut(s) 75, 160, 562, 632
BstH2I RGCGCY 1 cut(s) 229
BstHHI GCGC 1 cut(s) 228
BstKTI GATC 2 cut(s) 496, 649
BstMBI GATC 2 cut(s) 493, 646
BstNI CCWGG 2 cut(s) 94, 542
BstNSI RCATGY 2 cut(s) 299, 450
BstSCI CCNGG 2 cut(s) 92, 540
BstSNI TACGTA 1 cut(s) 236
Bsu15I ATCGAT 1 cut(s) 726
BsuI GTATCC 1 cut(s) 380
BsuTUI ATCGAT 1 cut(s) 726
BtsCI GGATG 4 cut(s) 75, 160, 562, 632
Cac8I GCNNGC 1 cut(s) 661
CfoI GCGC 1 cut(s) 228
Cfr13I GGNCC 2 cut(s) 17, 89
ClaI ATCGAT 1 cut(s) 726
CseI GACGC 1 cut(s) 562
Csp6I GTAC 2 cut(s) 98, 233
CviAII CATG 3 cut(s) 296, 447, 656
CviJI RGCY 4 cut(s) 188, 194, 207, 631
CviKI_1 RGCY 4 cut(s) 188, 194, 207, 631
CviQI GTAC 2 cut(s) 98, 233
DinI GGCGCC 1 cut(s) 227
DpnI GATC 2 cut(s) 495, 648
DpnII GATC 2 cut(s) 493, 646
Eco105I TACGTA 1 cut(s) 236
Eco130I CCWWGG 1 cut(s) 65
Eco47I GGWCC 2 cut(s) 17, 89
Eco88I CYCGRG 1 cut(s) 354
EcoO109I RGGNCCY 1 cut(s) 89
EcoRII CCWGG 2 cut(s) 92, 540
EcoT14I CCWWGG 1 cut(s) 65
EcoT22I ATGCAT 1 cut(s) 426
EgeI GGCGCC 1 cut(s) 227
EheI GGCGCC 1 cut(s) 227
ErhI CCWWGG 1 cut(s) 65
FaeI CATG 3 cut(s) 299, 450, 659
FaqI GGGAC 1 cut(s) 75
FatI CATG 3 cut(s) 295, 446, 655
FokI GGATG 4 cut(s) 82, 167, 549, 639
GlaI GCGC 1 cut(s) 227
GsuI CTGGAG 1 cut(s) 329
HaeII RGCGCY 1 cut(s) 229
HgaI GACGC 1 cut(s) 562
HhaI GCGC 1 cut(s) 228
Hin1I GRCGYC 2 cut(s) 226, 554
Hin1II CATG 3 cut(s) 299, 450, 659
Hin6I GCGC 1 cut(s) 226
HinP1I GCGC 1 cut(s) 226
HphI GGTGA 1 cut(s) 224
Hpy166II GTNNAC 1 cut(s) 233
Hpy188I TCNGA 2 cut(s) 293, 552
Hpy188III TCNNGA 4 cut(s) 356, 377, 689, 746
Hpy8I GTNNAC 1 cut(s) 233
HpyAV CCTTC 3 cut(s) 30, 80, 662
HpyCH4IV ACGT 1 cut(s) 235
HpyCH4V TGCA 2 cut(s) 299, 424
HpySE526I ACGT 1 cut(s) 235
Hsp92I GRCGYC 2 cut(s) 226, 554
Hsp92II CATG 3 cut(s) 299, 450, 659
HspAI GCGC 1 cut(s) 226
KasI GGCGCC 1 cut(s) 225
Kzo9I GATC 2 cut(s) 493, 646
LmnI GCTCC 1 cut(s) 146
LpnPI CCDG 9 cut(s) 79, 106, 208, 293, 390, 527, 554, 645, 702
LweI GCATC 1 cut(s) 411
MaeII ACGT 1 cut(s) 235
MaeIII GTNAC 4 cut(s) 129, 246, 404, 739
MalI GATC 2 cut(s) 495, 648
MboI GATC 2 cut(s) 493, 646
MboII GAAGA 3 cut(s) 17, 134, 336
MluCI AATT 7 cut(s) 27, 172, 281, 372, 400, 504, 734
Mly113I GGCGCC 1 cut(s) 226
MmeI TCCRAC 1 cut(s) 316
MnlI CCTC 5 cut(s) 40, 304, 307, 363, 645
Mph1103I ATGCAT 1 cut(s) 426
MseI TTAA 2 cut(s) 102, 371
MspR9I CCNGG 2 cut(s) 94, 542
Mva1269I GAATGC 1 cut(s) 604
MvaI CCWGG 2 cut(s) 94, 542
NarI GGCGCC 1 cut(s) 226
NdeII GATC 2 cut(s) 493, 646
NlaIII CATG 3 cut(s) 299, 450, 659
NlaIV GGNNCC 2 cut(s) 91, 227
NsiI ATGCAT 1 cut(s) 426
NspI RCATGY 2 cut(s) 299, 450
PaeR7I CTCGAG 1 cut(s) 354
PasI CCCWGGG 1 cut(s) 93
PctI GAATGC 1 cut(s) 604
PluTI GGCGCC 1 cut(s) 229
Ppu21I YACGTR 1 cut(s) 236
PpuMI RGGWCCY 1 cut(s) 89
Psp5II RGGWCCY 1 cut(s) 89
Psp6I CCWGG 2 cut(s) 92, 540
PspGI CCWGG 2 cut(s) 92, 540
PspN4I GGNNCC 2 cut(s) 91, 227
PspPI GGNCC 2 cut(s) 17, 89
PspPPI RGGWCCY 1 cut(s) 89
RsaI GTAC 2 cut(s) 99, 234
RsaNI GTAC 2 cut(s) 98, 233
SaqAI TTAA 2 cut(s) 102, 371
Sau3AI GATC 2 cut(s) 493, 646
Sau96I GGNCC 2 cut(s) 17, 89
ScrFI CCNGG 2 cut(s) 94, 542
SfaNI GCATC 1 cut(s) 411
SfoI GGCGCC 1 cut(s) 227
Sfr274I CTCGAG 1 cut(s) 354
SinI GGWCC 2 cut(s) 17, 89
SlaI CTCGAG 1 cut(s) 354
SmlI CTYRAG 1 cut(s) 354
SmoI CTYRAG 1 cut(s) 354
SnaBI TACGTA 1 cut(s) 236
Sse9I AATT 7 cut(s) 27, 172, 281, 372, 400, 504, 734
SspDI GGCGCC 1 cut(s) 225
StyD4I CCNGG 2 cut(s) 92, 540
StyI CCWWGG 1 cut(s) 65
TaiI ACGT 1 cut(s) 238
TaqI TCGA 3 cut(s) 355, 588, 726
TasI AATT 7 cut(s) 27, 172, 281, 372, 400, 504, 734
Tru1I TTAA 2 cut(s) 102, 371
Tru9I TTAA 2 cut(s) 102, 371
TspDTI ATGAA 6 cut(s) 248, 536, 551, 644, 704, 744
TspGWI ACGGA 1 cut(s) 639
VpaK11BI GGWCC 2 cut(s) 17, 89
XapI RAATTY 2 cut(s) 504, 734
XceI RCATGY 2 cut(s) 299, 450
XhoI CTCGAG 1 cut(s) 354
Zsp2I ATGCAT 1 cut(s) 426
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.