RLG00000029883

Histone-lysine N-methyltransferase

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
Physical Location & Seq
Reverse (-)
50687861 .. 50692106
4246 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000029883

Sequence Viewer

Length: 801 bp
ATGGATCCCAACGAGACCGCACAGCAGCTTCTTTCCCTTCACGCTAGAATTGTGGGAAACATGGAGTCGGAGACTATGGTCTCTACCACAGATCAACGTGTTGAAGAAGAGCCACAGTACACACATATTGACCAGAATGAATTCTCACAGAGAAGGCACAAGAAGCAGGAAGAGGAGGAGATTGTCATATGTGAATGCAAGTATGATGAAAAGGATCCTGAAAGTGCATGTGGAGAAAGGTGCTTGAATGTGTTGACCAGCACGGAATGCACTCCTGGATTTTGCCCTTGTGGTGTCTATTGTAAGAATCAGAGATTTCAGAAATGTGAATATGCCAAGACAGAATTGTTTAAAACAGAAGGCCGTGGTTGGGGTCTTTTAGCCAATGAGAACATTAAGGCAGGGCAGTTTATTATTGAATACTGTGGAGAAGTGATATCATGGAAGGAAGCAAAGAAAAGATCTCATGCTTATGAAGTTGAAGGTATCAGGGATGCATTTATTATTTCTCTTAATGCCTCTGAGTCTATTGATGCCACTGTGAAGGGAAGCCTAGCGAGATTTATAAATCATTCTTGCCAACCAAATTGTGAGACAAGAAAGTGGAATGTGCTTGGGGAAATTAGGGTTGGAATATTTGCAAAACAAGATATATTAGCTGGAACTGAGTTGGCATATGACTACAATTTTGAATGGTATGGGGGTGTGAAGGTTCGCTGCCTTTGTGGTGCGCCCAGCTGTTCGGGATTTCTTGGGGCAAAATCTCGTGGTTTTCAGGAATTCATCCAAAGGCCTGCTTAG

Protein Analysis

267

Amino Acids

30.16

Weight (kDa)

5.34

Isoelectric Point (pI)

52.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AWS PF17907 72 - 109 2.1e-15 AWS domain
SET PF00856 123 - 229 4.7e-26 SET domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000143)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G76710 AT1G76710 AT1G76710 AT1G76710
fragaria_vesca FvH4_1g20063 FvH4_2g15231 FvH4_3g04011 FvH4_3g28681 FvH4_4g01411 FvH4_4g10181 FvH4_4g15922 FvH4_4g16651 FvH4_4g16652 FvH4_5g13892 FvH4_5g13893 FvH4_5g20623 FvH4_5g20623 FvH4_5g20623 FvH4_5g20623 FvH4_5g25511 FvH4_6g12551 FvH4_6g12552 FvH4_6g38841 FvH4_7g04391
malus_domestica MD05G1031300.v1.1 MD05G1031400.v1.1 MD05G1031500.v1.1 MD08G1164400.v1.1 MD10G1032900.v1.1 MD10G1033000.v1.1 MD10G1033100.v1.1
prunus_persica Prupe.3G240700_v2.0.a1 Prupe.7G144600_v2.0.a1 Prupe.8G038500_v2.0.a1 Prupe.8G038500_v2.0.a1
pyrus_communis pycom05g02250 pycom05g02260 pycom05g02270 pycom05g02280 pycom08g14160 pycom10g02100 pycom10g02110 pycom10g02130
rosa_chinensis RchiOBHm_Chr1g0329481 RchiOBHm_Chr1g0329491 RchiOBHm_Chr1g0341531 RchiOBHm_Chr3g0464811 RchiOBHm_Chr3g0494701 RchiOBHm_Chr3g0497501 RchiOBHm_Chr4g0385841 RchiOBHm_Chr5g0061181 RchiOBHm_Chr6g0263001 RchiOBHm_Chr7g0193111 RchiOBHm_Chr7g0206281 RchiOBHm_Chr7g0206311
rosa_laevigata RLG00000018908 RLG00000028528 RLG00000028803 RLG00000029882 RLG00000029883 RLG00000030361
rosa_multiflora Rmu_co8196328.1_g000001 Rmu_co8259135.1_g000001 Rmu_co8269185.1_g000001 Rmu_sc0000076.1_g000019 Rmu_sc0000311.1_g000007 Rmu_sc0000429.1_g000038 Rmu_sc0000429.1_g000039 Rmu_sc0000429.1_g000040 Rmu_sc0000511.1_g000005 Rmu_sc0000539.1_g000054 Rmu_sc0000566.1_g000039 Rmu_sc0000805.1_g000032 Rmu_sc0000870.1_g000073 Rmu_sc0000870.1_g000074 Rmu_sc0001010.1_g000018 Rmu_sc0001083.1_g000013 Rmu_sc0001114.1_g000011 Rmu_sc0001702.1_g000027 Rmu_sc0001779.1_g000012 Rmu_sc0002923.1_g000036 Rmu_sc0003242.1_g000011 Rmu_sc0003291.1_g000036 Rmu_sc0003393.1_g000012 Rmu_sc0003872.1_g000016 Rmu_sc0003872.1_g000017 Rmu_sc0003872.1_g000018 Rmu_sc0004084.1_g000020 Rmu_sc0004386.1_g000005 Rmu_sc0004622.1_g000005 Rmu_sc0004742.1_g000021 Rmu_sc0004755.1_g000020 Rmu_sc0004805.1_g000036 Rmu_sc0005065.1_g000006 Rmu_sc0005177.1_g000004 Rmu_sc0006373.1_g000003 Rmu_sc0006373.1_g000004 Rmu_sc0007121.1_g000002 Rmu_sc0007943.1_g000003 Rmu_sc0010368.1_g000006 Rmu_sc0010543.1_g000001 Rmu_sc0012591.1_g000006 Rmu_sc0013504.1_g000009 Rmu_sc0015025.1_g000001 Rmu_sc0016170.1_g000001 Rmu_sc0017156.1_g000001 Rmu_sc0026439.1_g000001
rosa_roxburghii Rroxscaffold_175G00432280 Rroxscaffold_1G00030190 Rroxscaffold_1G00030880 Rroxscaffold_2G00090520 Rroxscaffold_3G00227940 Rroxscaffold_3G00233400 Rroxscaffold_3G00238500 Rroxscaffold_3G00251650 Rroxscaffold_4G00301570 Rroxscaffold_4G00321040 Rroxscaffold_5G00350880 Rroxscaffold_7G00184400
rosa_rugosa Rorug01G0080800 Rorug01G0080900 Rorug01G0193900 Rorug02G0275900 Rorug02G0275900 Rorug02G0275900 Rorug02G0305400 Rorug02G0311800 Rorug02G0350400 Rorug02G0381300 Rorug03G0136700 Rorug03G0181900 Rorug03G0268000 Rorug04G0301600 Rorug05G0175100 Rorug05G0250700 Rorug05G0298200 Rorug05G0596000 Rorug06G0029500 Rorug07G0094300 Rorug07G0094300 Rorug07G0095400 Rorug07G0140100
rosa_samantha Rh1AG099200 Rh1AG190500 Rh1BG078900 Rh1BG079000 Rh1BG079100 Rh1CG084600 Rh1CG084700 Rh1CG095300 Rh1CG175900 Rh1DG103300 Rh1DG150400 Rh2AG079300 Rh2AG272400 Rh2AG464800 Rh2AG507400 Rh2DG078300 Rh2DG078400 Rh3CG206900 Rh3CG295400 Rh3DG206800 Rh3DG356200 Rh4CG071500 Rh4CG179200 Rh4DG064700 Rh5CG362400 Rh7AG212300 Rh7AG226200 Rh7BG222200
rosa_wichuraiana Rw0G009990 Rw0G011260 Rw0G011270 Rw0G012910 Rw0G013740 Rw1G007740 Rw1G013050 Rw1G014230 Rw2G014270 Rw3G012720 Rw3G028110 Rw4G006630 Rw4G015270 Rw4G016160 Rw4G031380 Rw5G011440 Rw5G029180 Rw5G048360 Rw5G048430 Rw5G048780 Rw6G005250 Rw6G006390 Rw7G002840 Rw7G014080 Rw7G019650 Rw7G032790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 566
AciI CCGC 1 cut(s) 18
AclWI GGATC 3 cut(s) 12, 209, 222
AcsI RAATTY 2 cut(s) 140, 779
AfaI GTAC 1 cut(s) 119
AfiI CCNNNNNNNGG 1 cut(s) 370
AflIII ACRYGT 1 cut(s) 97
AgsI TTSAA 5 cut(s) 104, 247, 419, 482, 692
AjnI CCWGG 1 cut(s) 274
AjuI GAANNNNNNNTTGG 2 cut(s) 612, 644
AluBI AGCT 3 cut(s) 28, 659, 738
AluI AGCT 3 cut(s) 28, 659, 738
Alw26I GTCTC 4 cut(s) 8, 65, 85, 587
AlwI GGATC 3 cut(s) 12, 209, 222
AoxI GGCC 2 cut(s) 361, 791
ApeKI GCWGC 2 cut(s) 25, 717
ApoI RAATTY 2 cut(s) 140, 779
ArsI GACNNNNNNTTYG 2 cut(s) 671, 703
Asp700I GAANNNNTTC 1 cut(s) 140
AspLEI GCGC 1 cut(s) 733
BamHI GGATCC 2 cut(s) 4, 214
BauI CACGAG 1 cut(s) 765
BbvI GCAGC 2 cut(s) 37, 704
BceAI ACGGC 1 cut(s) 348
BciT130I CCWGG 1 cut(s) 276
BcoDI GTCTC 4 cut(s) 8, 65, 85, 587
BfaI CTAG 2 cut(s) 45, 554
BglII AGATCT 1 cut(s) 461
BisI GCNGC 2 cut(s) 26, 718
BlsI GCNGC 2 cut(s) 27, 719
Bme1390I CCNGG 1 cut(s) 276
BmiI GGNNCC 2 cut(s) 6, 216
BmrFI CCNGG 1 cut(s) 276
BmsI GCATC 2 cut(s) 484, 523
BoxI GACNNNNGTC 1 cut(s) 77
BsaI GGTCTC 2 cut(s) 8, 85
BsaJI CCNNGG 1 cut(s) 364
Bsc4I CCNNNNNNNGG 1 cut(s) 370
BseBI CCWGG 1 cut(s) 276
BseDI CCNNGG 1 cut(s) 364
BseGI GGATG 2 cut(s) 499, 783
BseLI CCNNNNNNNGG 1 cut(s) 370
BseMII CTCAG 2 cut(s) 513, 657
BseRI GAGGAG 2 cut(s) 188, 191
BseXI GCAGC 2 cut(s) 37, 704
BseYI CCCAGC 1 cut(s) 734
BshFI GGCC 2 cut(s) 363, 793
BslI CCNNNNNNNGG 1 cut(s) 370
BsmAI GTCTC 4 cut(s) 8, 65, 85, 587
BsmI GAATGC 2 cut(s) 200, 272
BsnI GGCC 2 cut(s) 363, 793
Bso31I GGTCTC 2 cut(s) 8, 85
Bsp143I GATC 4 cut(s) 4, 91, 214, 461
BspACI CCGC 1 cut(s) 18
BspANI GGCC 2 cut(s) 363, 793
BspCNI CTCAG 2 cut(s) 514, 658
BspLI GGNNCC 2 cut(s) 6, 216
BspPI GGATC 3 cut(s) 12, 209, 222
BspQI GCTCTTC 1 cut(s) 102
BspTNI GGTCTC 2 cut(s) 8, 85
BssECI CCNNGG 1 cut(s) 364
BssMI GATC 4 cut(s) 4, 91, 214, 461
BssSI CACGAG 1 cut(s) 765
Bst2BI CACGAG 1 cut(s) 765
Bst2UI CCWGG 1 cut(s) 276
Bst4CI ACNGT 3 cut(s) 117, 425, 541
Bst6I CTCTTC 2 cut(s) 102, 165
BstAPI GCANNNNNTGC 1 cut(s) 267
BstC8I GCNNGC 1 cut(s) 795
BstDEI CTNAG 3 cut(s) 522, 666, 798
BstDSI CCRYGG 1 cut(s) 364
BstF5I GGATG 2 cut(s) 499, 783
BstHHI GCGC 1 cut(s) 733
BstKTI GATC 4 cut(s) 7, 94, 217, 464
BstMAI GTCTC 4 cut(s) 8, 65, 85, 587
BstMBI GATC 4 cut(s) 4, 91, 214, 461
BstMWI GCNNNNNNNGC 2 cut(s) 163, 267
BstNI CCWGG 1 cut(s) 276
BstNSI RCATGY 1 cut(s) 231
BstPAI GACNNNNGTC 1 cut(s) 77
BstSCI CCNGG 1 cut(s) 274
BstV1I GCAGC 2 cut(s) 37, 704
BstX2I RGATCY 3 cut(s) 4, 214, 461
BstYI RGATCY 3 cut(s) 4, 214, 461
BsuRI GGCC 2 cut(s) 363, 793
BtgI CCRYGG 1 cut(s) 364
BtsCI GGATG 2 cut(s) 499, 783
BtsIMutI CAGTG 1 cut(s) 537
Cac8I GCNNGC 1 cut(s) 795
CfoI GCGC 1 cut(s) 733
Csp6I GTAC 1 cut(s) 118
CviAII CATG 4 cut(s) 61, 228, 441, 467
CviJI RGCY 8 cut(s) 28, 112, 363, 383, 552, 659, 738, 793
CviKI_1 RGCY 8 cut(s) 28, 112, 363, 383, 552, 659, 738, 793
CviQI GTAC 1 cut(s) 118
DdeI CTNAG 3 cut(s) 522, 666, 798
DpnI GATC 4 cut(s) 6, 93, 216, 463
DpnII GATC 4 cut(s) 4, 91, 214, 461
DraI TTTAAA 1 cut(s) 352
Eam1104I CTCTTC 2 cut(s) 102, 165
EarI CTCTTC 2 cut(s) 102, 165
Eco147I AGGCCT 1 cut(s) 793
Eco31I GGTCTC 2 cut(s) 8, 85
Eco32I GATATC 1 cut(s) 438
EcoRI GAATTC 2 cut(s) 140, 779
EcoRII CCWGG 1 cut(s) 274
EcoRV GATATC 1 cut(s) 438
EcoT22I ATGCAT 1 cut(s) 499
FaeI CATG 4 cut(s) 64, 231, 444, 470
FalI AAGNNNNNCTT 1 cut(s) 781
FatI CATG 4 cut(s) 60, 227, 440, 466
FauNDI CATATG 2 cut(s) 188, 676
Fnu4HI GCNGC 2 cut(s) 26, 718
FokI GGATG 2 cut(s) 506, 770
Fsp4HI GCNGC 2 cut(s) 26, 718
FspBI CTAG 2 cut(s) 45, 554
GlaI GCGC 1 cut(s) 732
GluI GCNGC 2 cut(s) 26, 718
GsaI CCCAGC 1 cut(s) 738
HaeIII GGCC 2 cut(s) 363, 793
HhaI GCGC 1 cut(s) 733
Hin1II CATG 4 cut(s) 64, 231, 444, 470
Hin6I GCGC 1 cut(s) 731
HinP1I GCGC 1 cut(s) 731
HincII GTYRAC 1 cut(s) 255
HindII GTYRAC 1 cut(s) 255
HinfI GANTC 3 cut(s) 65, 307, 524
Hpy166II GTNNAC 2 cut(s) 120, 255
Hpy188I TCNGA 4 cut(s) 70, 312, 321, 523
Hpy188III TCNNGA 3 cut(s) 218, 744, 776
Hpy8I GTNNAC 2 cut(s) 120, 255
HpyAV CCTTC 7 cut(s) 47, 147, 353, 439, 476, 538, 703
HpyCH4III ACNGT 3 cut(s) 117, 425, 541
HpyCH4IV ACGT 1 cut(s) 97
HpyCH4V TGCA 5 cut(s) 198, 227, 270, 497, 641
HpyF10VI GCNNNNNNNGC 2 cut(s) 163, 267
HpyF3I CTNAG 3 cut(s) 522, 666, 798
HpySE526I ACGT 1 cut(s) 97
Hsp92II CATG 4 cut(s) 64, 231, 444, 470
HspAI GCGC 1 cut(s) 731
Kzo9I GATC 4 cut(s) 4, 91, 214, 461
LguI GCTCTTC 1 cut(s) 102
Lsp1109I GCAGC 2 cut(s) 37, 704
LweI GCATC 2 cut(s) 484, 523
MaeI CTAG 2 cut(s) 45, 554
MaeII ACGT 1 cut(s) 97
MalI GATC 4 cut(s) 6, 93, 216, 463
MboI GATC 4 cut(s) 4, 91, 214, 461
MboII GAAGA 3 cut(s) 116, 119, 182
MflI RGATCY 3 cut(s) 4, 214, 461
MluCI AATT 7 cut(s) 48, 140, 344, 586, 621, 685, 779
MlyI GAGTC 2 cut(s) 74, 533
MmeI TCCRAC 2 cut(s) 48, 610
MnlI CCTC 3 cut(s) 166, 169, 529
Mph1103I ATGCAT 1 cut(s) 499
MroXI GAANNNNTTC 1 cut(s) 140
MseI TTAA 3 cut(s) 351, 396, 513
MslI CAYNNNNRTG 1 cut(s) 471
MspA1I CMGCKG 1 cut(s) 738
MspR9I CCNGG 1 cut(s) 276
Mva1269I GAATGC 2 cut(s) 200, 272
MvaI CCWGG 1 cut(s) 276
MwoI GCNNNNNNNGC 2 cut(s) 163, 267
NdeI CATATG 2 cut(s) 188, 676
NdeII GATC 4 cut(s) 4, 91, 214, 461
NlaIII CATG 4 cut(s) 64, 231, 444, 470
NlaIV GGNNCC 2 cut(s) 6, 216
NsiI ATGCAT 1 cut(s) 499
NspI RCATGY 1 cut(s) 231
PceI AGGCCT 1 cut(s) 793
PciSI GCTCTTC 1 cut(s) 102
PctI GAATGC 2 cut(s) 200, 272
PdmI GAANNNNTTC 1 cut(s) 140
PfeI GAWTC 1 cut(s) 307
PfoI TCCNGGA 1 cut(s) 274
PkrI GCNGC 2 cut(s) 27, 719
PleI GAGTC 2 cut(s) 73, 532
PpsI GAGTC 2 cut(s) 73, 532
PshAI GACNNNNGTC 1 cut(s) 77
PsiI TTATAA 1 cut(s) 566
Psp6I CCWGG 1 cut(s) 274
PspFI CCCAGC 1 cut(s) 734
PspGI CCWGG 1 cut(s) 274
PspN4I GGNNCC 2 cut(s) 6, 216
PsuI RGATCY 3 cut(s) 4, 214, 461
PvuII CAGCTG 1 cut(s) 738
RsaI GTAC 1 cut(s) 119
RsaNI GTAC 1 cut(s) 118
RseI CAYNNNNRTG 1 cut(s) 471
SapI GCTCTTC 1 cut(s) 102
SaqAI TTAA 3 cut(s) 351, 396, 513
SatI GCNGC 2 cut(s) 26, 718
Sau3AI GATC 4 cut(s) 4, 91, 214, 461
SchI GAGTC 2 cut(s) 74, 533
ScrFI CCNGG 1 cut(s) 276
SetI ASST 7 cut(s) 30, 100, 242, 487, 661, 714, 740
SfaNI GCATC 2 cut(s) 484, 523
SmiMI CAYNNNNRTG 1 cut(s) 471
Sse9I AATT 7 cut(s) 48, 140, 344, 586, 621, 685, 779
SseBI AGGCCT 1 cut(s) 793
SsiI CCGC 1 cut(s) 18
SspI AATATT 1 cut(s) 636
SspMI CTAG 2 cut(s) 45, 554
StuI AGGCCT 1 cut(s) 793
StyD4I CCNGG 1 cut(s) 274
TaaI ACNGT 3 cut(s) 117, 425, 541
TaiI ACGT 1 cut(s) 100
TasI AATT 7 cut(s) 48, 140, 344, 586, 621, 685, 779
TatI WGTACW 1 cut(s) 117
TfiI GAWTC 1 cut(s) 307
Tru1I TTAA 3 cut(s) 351, 396, 513
Tru9I TTAA 3 cut(s) 351, 396, 513
TscAI CASTG 1 cut(s) 544
TseI GCWGC 2 cut(s) 25, 717
TspDTI ATGAA 4 cut(s) 153, 222, 489, 772
TspGWI ACGGA 1 cut(s) 278
TspRI CASTG 1 cut(s) 544
XapI RAATTY 2 cut(s) 140, 779
XceI RCATGY 1 cut(s) 231
XmnI GAANNNNTTC 1 cut(s) 140
XspI CTAG 2 cut(s) 45, 554
Zsp2I ATGCAT 1 cut(s) 499
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.