FvH4_5g25511

protein FAR1-RELATED SEQUENCE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0000143
Physical Location & Seq
Forward (+)
16998576 .. 17001552
2977 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g25511.t1

Sequence Viewer

Length: 2562 bp
ATGCAAAATAATCTGGTGGTGGTTACTATGAGGTCTGATTCTGGGGGTGTTGGAAAAAGACGGAACAGACCTAGGATAACATTTTGTTGTGAAAGAAGTGGTGAGTATAGGCCAAGGAAATCTAATCGTTCCGATGATTCAAATTTTGGTTCTCAAAGTAAAACAGGGAAGCATTCACGCCCGAGGAACACTGGTACCAAAAAGTGTGGATGCCCATTCTTATTGAGGGGATTGAATGTTGGAGATGGAAATGAATGGAAATTGGAAGTTGTATGTGGGGTGCATAATCATGACGCTTCAAACTATCTCCAAGGACATAGTTATGCAGGGAGGTTGACTGAAGAAGAAAATCAGCTCTTGGTGGAAATGTCTAAGAATTTTGTGCGACCTAAGCAAATTTTGACTACCATAAAGAAAAGAGATGGGCTAAATGTGTCAACGTTGAAGACAATATATAATGCTAGACAAAGGTACAGGACAAAAGATTTGGCCGGAAGAACACAAATGCAGCAATTGTTAAGTAAATTATCTCTTCACGGCTATATTGAGCATCACAGAAATATTGAACAAGATGAGGTTTTGTCAGACTTGTTTTGGACTCATCCCACAAATGTTGATATTCTACGTTCATTCCCACATGTAATTATAATGGACTGCACCTACAAGACTAATAGGTATCATTTTCCACTTTTGGAGATTGTTGGGGTGACATCAACTAACATCACATTCACTGTTGCATTTGCATACCTTAATTCAGAGAAGGAAGATAATTACTCATGGGCTTTGTCTCGGTTGAAGGAGCTATTTATTGATGATCTTCCTCATGTTTTAGTTACAGATAGAGACTTGGCGCTTATGAATGCCATACGTAAAATATTTCCTACTAGCCACCATATGTTGTGTACATGGCATATTAGTAATGAGGTGTTTGCAAAATGCAGTAGCATGTTTGAAACCACAGAAATGTTTGAGATGTTTAATGATACTTGGCAATTTGTGATTACTTCCAAAACTAAGGAGGAGTATCTGGAGAGGCTGAAGTCATTTGAAGTTGGGTACAAATCATATCCAGATGCTATTTCCTATTTGAAGGACACTTGGTTAATGCACAAGGAAAAGTTTGTATCAGCATGGACAAACAAGTTTATGCATTTTGGTACTACTACTTCCAATAGGGCTGAAAGTGCACATGCAAAGCTAAAACGACAACTTGGGTCTAGCCAACTTAACTTTGATTTGTCATGGGACAACATCCATTCTTTAATAGAGCTGCAACATACTGATATTAAAGTATCATTTGAAAAGAGTCGTTGCACTATCCAGCATTCTGCTAAGCATGAGGAGTTGAGAGAGTTAAGAGGCTTTCTGCCATGTGTTCACGAGATTGTCTCATACAAAAGTAGTAACAATCCCATTCCACTTGAGTGTATTCATCCTCATTGGAAGAAGTTAGATTTCAGTATTCTCCCTCCAAAGAGCAGCAGCAGGAGATCAAATGTTGTTCATCTTAAACCATATATGATAAGATTAGAGGAGTGGTTTGAGGAACAAAATGAGGAGAGGAAGAGACAACTTTTATTGAAGTTAGAGGAGTACATGAATCCGAGTTCTACATCTCTTAAAGTGCCACAAGTGAAGACCAATAATCGAGGCCGTCCACGTAAAGAAGATTCCTCCACTCGTCGTTTACCTTCTGCCTTTGAGTATGTGAGTGCATTATCAGGCCATGATAGTCAGTCATCCAATCCCACCGTTGGGTCTCAGAGAAAAAAATCGAAGAAGGTTTCAAAGAATAAACAACAATCAGAGCCCAAAGAGTCGCAAGTATACATAAAAAGGAAAAATAAGGTGCTCAACAATTCAAACCAGAAGGTTTCAAACAACATTTGCTCGTTTGTACTACCTAGATTGACATACGAATATACGACACTATTTCCTACTATGTATCAACAATACATTGCAAATCAAACGGATGTTGATATGGATGGAAACTGTGGATATAGAGTCATTGCTATCTCAATGGGGTTTGGTCATGATGATTGGCGTATAGTACGTAAACATTTACTAGATGAGCTTAGAGGGAATCGAACTTTCTATGAAGACCACATTTATGGGGCTAAACAGTTTCGTGAGCTAGAGAATTGCCTTGATTATTTTGTTGACGGGTGTGCACCTACTGACTTTTGGATGACCATGCCTGATATGGGACACATTATTGCCACATGTTATGGGGTGACAGTAATTCATTTATCGTCCACAATGTGCGTTACTTTTCTTCCTTTATATAAAAGAAATGAACGTCGAAATGAATACCGTGATGCTTGCGATGTTGGTGAATTTGCAATTGGATACGTTGGCCGTCATTTTGTTAAGGTAAATTTAATATCTCAATCTGCTCCAATTCCTCCTGTTAGTCCTGTATGGCATAGATACCAAGTTGATAATGGACAACTGTACCGTATTTATGAACAACGTATAGATCAGTTCAAGAACCTCAAAAGTATGGAGACCGTTGCTACTAGAGATACATTTATAGACATTATGCATCTTGATATCGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE

Protein Analysis

854

Amino Acids

99.37

Weight (kDa)

9.05

Isoelectric Point (pI)

44.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ZSWIM1-3_RNaseH-like PF21056 189 - 296 5.3e-11 Zinc finger SWIM domain-containing protein 1/3, RNaseH-like domain
MULE PF10551 214 - 307 1.6e-24 MULE transposase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000143)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G76710 AT1G76710 AT1G76710 AT1G76710
fragaria_vesca FvH4_1g20063 FvH4_2g15231 FvH4_3g04011 FvH4_3g28681 FvH4_4g01411 FvH4_4g10181 FvH4_4g15922 FvH4_4g16651 FvH4_4g16652 FvH4_5g13892 FvH4_5g13893 FvH4_5g20623 FvH4_5g20623 FvH4_5g20623 FvH4_5g20623 FvH4_5g25511 FvH4_6g12551 FvH4_6g12552 FvH4_6g38841 FvH4_7g04391
malus_domestica MD05G1031300.v1.1 MD05G1031400.v1.1 MD05G1031500.v1.1 MD08G1164400.v1.1 MD10G1032900.v1.1 MD10G1033000.v1.1 MD10G1033100.v1.1
prunus_persica Prupe.3G240700_v2.0.a1 Prupe.7G144600_v2.0.a1 Prupe.8G038500_v2.0.a1 Prupe.8G038500_v2.0.a1
pyrus_communis pycom05g02250 pycom05g02260 pycom05g02270 pycom05g02280 pycom08g14160 pycom10g02100 pycom10g02110 pycom10g02130
rosa_chinensis RchiOBHm_Chr1g0329481 RchiOBHm_Chr1g0329491 RchiOBHm_Chr1g0341531 RchiOBHm_Chr3g0464811 RchiOBHm_Chr3g0494701 RchiOBHm_Chr3g0497501 RchiOBHm_Chr4g0385841 RchiOBHm_Chr5g0061181 RchiOBHm_Chr6g0263001 RchiOBHm_Chr7g0193111 RchiOBHm_Chr7g0206281 RchiOBHm_Chr7g0206311
rosa_laevigata RLG00000018908 RLG00000028528 RLG00000028803 RLG00000029882 RLG00000029883 RLG00000030361
rosa_multiflora Rmu_co8196328.1_g000001 Rmu_co8259135.1_g000001 Rmu_co8269185.1_g000001 Rmu_sc0000076.1_g000019 Rmu_sc0000311.1_g000007 Rmu_sc0000429.1_g000038 Rmu_sc0000429.1_g000039 Rmu_sc0000429.1_g000040 Rmu_sc0000511.1_g000005 Rmu_sc0000539.1_g000054 Rmu_sc0000566.1_g000039 Rmu_sc0000805.1_g000032 Rmu_sc0000870.1_g000073 Rmu_sc0000870.1_g000074 Rmu_sc0001010.1_g000018 Rmu_sc0001083.1_g000013 Rmu_sc0001114.1_g000011 Rmu_sc0001702.1_g000027 Rmu_sc0001779.1_g000012 Rmu_sc0002923.1_g000036 Rmu_sc0003242.1_g000011 Rmu_sc0003291.1_g000036 Rmu_sc0003393.1_g000012 Rmu_sc0003872.1_g000016 Rmu_sc0003872.1_g000017 Rmu_sc0003872.1_g000018 Rmu_sc0004084.1_g000020 Rmu_sc0004386.1_g000005 Rmu_sc0004622.1_g000005 Rmu_sc0004742.1_g000021 Rmu_sc0004755.1_g000020 Rmu_sc0004805.1_g000036 Rmu_sc0005065.1_g000006 Rmu_sc0005177.1_g000004 Rmu_sc0006373.1_g000003 Rmu_sc0006373.1_g000004 Rmu_sc0007121.1_g000002 Rmu_sc0007943.1_g000003 Rmu_sc0010368.1_g000006 Rmu_sc0010543.1_g000001 Rmu_sc0012591.1_g000006 Rmu_sc0013504.1_g000009 Rmu_sc0015025.1_g000001 Rmu_sc0016170.1_g000001 Rmu_sc0017156.1_g000001 Rmu_sc0026439.1_g000001
rosa_roxburghii Rroxscaffold_175G00432280 Rroxscaffold_1G00030190 Rroxscaffold_1G00030880 Rroxscaffold_2G00090520 Rroxscaffold_3G00227940 Rroxscaffold_3G00233400 Rroxscaffold_3G00238500 Rroxscaffold_3G00251650 Rroxscaffold_4G00301570 Rroxscaffold_4G00321040 Rroxscaffold_5G00350880 Rroxscaffold_7G00184400
rosa_rugosa Rorug01G0080800 Rorug01G0080900 Rorug01G0193900 Rorug02G0275900 Rorug02G0275900 Rorug02G0275900 Rorug02G0305400 Rorug02G0311800 Rorug02G0350400 Rorug02G0381300 Rorug03G0136700 Rorug03G0181900 Rorug03G0268000 Rorug04G0301600 Rorug05G0175100 Rorug05G0250700 Rorug05G0298200 Rorug05G0596000 Rorug06G0029500 Rorug07G0094300 Rorug07G0094300 Rorug07G0095400 Rorug07G0140100
rosa_samantha Rh1AG099200 Rh1AG190500 Rh1BG078900 Rh1BG079000 Rh1BG079100 Rh1CG084600 Rh1CG084700 Rh1CG095300 Rh1CG175900 Rh1DG103300 Rh1DG150400 Rh2AG079300 Rh2AG272400 Rh2AG464800 Rh2AG507400 Rh2DG078300 Rh2DG078400 Rh3CG206900 Rh3CG295400 Rh3DG206800 Rh3DG356200 Rh4CG071500 Rh4CG179200 Rh4DG064700 Rh5CG362400 Rh7AG212300 Rh7AG226200 Rh7BG222200
rosa_wichuraiana Rw0G009990 Rw0G011260 Rw0G011270 Rw0G012910 Rw0G013740 Rw1G007740 Rw1G013050 Rw1G014230 Rw2G014270 Rw3G012720 Rw3G028110 Rw4G006630 Rw4G015270 Rw4G016160 Rw4G031380 Rw5G011440 Rw5G029180 Rw5G048360 Rw5G048430 Rw5G048780 Rw6G005250 Rw6G006390 Rw7G002840 Rw7G014080 Rw7G019650 Rw7G032790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 647
Acc65I GGTACC 1 cut(s) 194
AccB1I GGYRCC 1 cut(s) 194
AccI GTMKAC 1 cut(s) 1827
AclI AACGTT 1 cut(s) 440
AcoI YGGCCR 2 cut(s) 489, 2356
AcsI RAATTY 5 cut(s) 142, 376, 396, 2336, 2377
AcuI CTGAAG 2 cut(s) 360, 1058
AdeI CACNNNGTG 1 cut(s) 2262
AfaI GTAC 9 cut(s) 196, 473, 904, 1058, 1159, 1595, 1899, 2052, 2456
AfiI CCNNNNNNNGG 3 cut(s) 1754, 1755, 2204
AflIII ACRYGT 2 cut(s) 637, 2222
AjuI GAANNNNNNNTTGG 2 cut(s) 2328, 2360
AleI CACNNNNGTG 1 cut(s) 1423
AluBI AGCT 6 cut(s) 355, 802, 1198, 1270, 2074, 2134
AluI AGCT 6 cut(s) 355, 802, 1198, 1270, 2074, 2134
Alw21I GWGCWC 3 cut(s) 1189, 1854, 2173
Alw26I GTCTC 6 cut(s) 792, 837, 1393, 1561, 1764, 2501
Alw44I GTGCAC 2 cut(s) 1185, 2169
Ama87I CYCGRG 1 cut(s) 181
AoxI GGCC 5 cut(s) 110, 489, 1651, 1723, 2356
ApaLI GTGCAC 2 cut(s) 1185, 2169
ApeKI GCWGC 4 cut(s) 508, 1270, 1479, 1482
ApoI RAATTY 5 cut(s) 142, 376, 396, 2336, 2377
ArsI GACNNNNNNTTYG 2 cut(s) 469, 501
Asp718I GGTACC 1 cut(s) 194
AspA2I CCTAGG 1 cut(s) 71
AspLEI GCGC 1 cut(s) 853
AsuHPI GGTGA 4 cut(s) 113, 718, 2245, 2345
AvaI CYCGRG 1 cut(s) 181
AvrII CCTAGG 1 cut(s) 71
BaeGI GKGCMC 2 cut(s) 1189, 2173
BaeI ACNNNNGTAYC 4 cut(s) 178, 211, 2438, 2471
BanI GGYRCC 1 cut(s) 194
BanII GRGCYC 1 cut(s) 1812
BarI GAAGNNNNNNTAC 2 cut(s) 1150, 1182
BauI CACGAG 1 cut(s) 1379
BbsI GAAGAC 3 cut(s) 452, 1643, 2106
Bbv12I GWGCWC 3 cut(s) 1189, 1854, 2173
BbvI GCAGC 4 cut(s) 520, 1257, 1491, 1494
BccI CCATC 3 cut(s) 239, 416, 1979
BceAI ACGGC 3 cut(s) 553, 1638, 2343
BciVI GTATCC 1 cut(s) 2342
BcoDI GTCTC 6 cut(s) 792, 837, 1393, 1561, 1764, 2501
BfaI CTAG 8 cut(s) 72, 462, 885, 1218, 1905, 2066, 2135, 2520
BfoI RGCGCY 1 cut(s) 854
BfuI GTATCC 1 cut(s) 2342
BisI GCNGC 4 cut(s) 509, 1271, 1480, 1483
BlnI CCTAGG 1 cut(s) 71
BlpI GCTNAGC 1 cut(s) 1332
BlsI GCNGC 4 cut(s) 510, 1272, 1481, 1484
BmeT110I CYCGRG 1 cut(s) 181
BmiI GGNNCC 1 cut(s) 196
BmsI GCATC 5 cut(s) 200, 559, 1063, 2308, 2554
BpiI GAAGAC 3 cut(s) 452, 1643, 2106
BplI GAGNNNNNCTC 2 cut(s) 1373, 1405
BpmI CTGGAG 1 cut(s) 1049
Bpu10I CCTNAGC 1 cut(s) 390
Bpu1102I GCTNAGC 1 cut(s) 1332
BpuEI CTTGAG 1 cut(s) 1442
Bsa29I ATCGAT 1 cut(s) 2556
BsaAI YACGTR 3 cut(s) 869, 1661, 2054
BsaI GGTCTC 2 cut(s) 1764, 2501
BsaJI CCNNGG 4 cut(s) 71, 113, 182, 310
Bsc4I CCNNNNNNNGG 3 cut(s) 1754, 1755, 2204
Bse1I ACTGG 1 cut(s) 196
Bse3DI GCAATG 2 cut(s) 1956, 2007
BseCI ATCGAT 1 cut(s) 2556
BseDI CCNNGG 4 cut(s) 71, 113, 182, 310
BseGI GGATG 8 cut(s) 215, 601, 1251, 1432, 1739, 1978, 1990, 2193
BseLI CCNNNNNNNGG 3 cut(s) 1754, 1755, 2204
BseMI GCAATG 2 cut(s) 1956, 2007
BseMII CTCAG 1 cut(s) 1775
BseNI ACTGG 1 cut(s) 196
BseRI GAGGAG 5 cut(s) 1034, 1355, 1547, 1571, 1604
BseSI GKGCMC 2 cut(s) 1189, 2173
BseXI GCAGC 4 cut(s) 520, 1257, 1491, 1494
BsgI GTGCAG 1 cut(s) 640
BshFI GGCC 5 cut(s) 112, 491, 1653, 1725, 2358
BshNI GGYRCC 1 cut(s) 194
BshVI ATCGAT 1 cut(s) 2556
BsiHKAI GWGCWC 3 cut(s) 1189, 1854, 2173
BsiHKCI CYCGRG 1 cut(s) 181
BsiSI CCGG 1 cut(s) 492
BslFI GGGAC 2 cut(s) 1259, 2220
BslI CCNNNNNNNGG 3 cut(s) 1754, 1755, 2204
BsmAI GTCTC 6 cut(s) 792, 837, 1393, 1561, 1764, 2501
BsmFI GGGAC 2 cut(s) 1259, 2220
BsmI GAATGC 3 cut(s) 172, 865, 1324
BsnI GGCC 5 cut(s) 112, 491, 1653, 1725, 2358
Bso31I GGTCTC 2 cut(s) 1764, 2501
BsoBI CYCGRG 1 cut(s) 181
Bsp1286I GDGCHC 4 cut(s) 1189, 1812, 1854, 2173
Bsp1407I TGTACA 1 cut(s) 902
Bsp143I GATC 3 cut(s) 814, 1490, 2479
Bsp1720I GCTNAGC 1 cut(s) 1332
BspANI GGCC 5 cut(s) 112, 491, 1653, 1725, 2358
BspCNI CTCAG 1 cut(s) 1774
BspDI ATCGAT 1 cut(s) 2556
BspHI TCATGA 2 cut(s) 289, 2032
BspLI GGNNCC 1 cut(s) 196
BspT107I GGYRCC 1 cut(s) 194
BspTNI GGTCTC 2 cut(s) 1764, 2501
BsrDI GCAATG 2 cut(s) 1956, 2007
BsrGI TGTACA 1 cut(s) 902
BsrI ACTGG 1 cut(s) 196
BssECI CCNNGG 4 cut(s) 71, 113, 182, 310
BssMI GATC 3 cut(s) 814, 1490, 2479
BssNAI GTATAC 1 cut(s) 1828
BssSI CACGAG 1 cut(s) 1379
BssT1I CCWWGG 3 cut(s) 71, 113, 310
Bst1107I GTATAC 1 cut(s) 1828
Bst2BI CACGAG 1 cut(s) 1379
Bst4CI ACNGT 9 cut(s) 733, 1753, 1994, 2124, 2239, 2315, 2454, 2459, 2512
Bst6I CTCTTC 2 cut(s) 537, 1559
BstAUI TGTACA 1 cut(s) 902
BstBAI YACGTR 3 cut(s) 869, 1661, 2054
BstC8I GCNNGC 1 cut(s) 2323
BstDEI CTNAG 6 cut(s) 372, 390, 1014, 1332, 1761, 2075
BstF5I GGATG 8 cut(s) 215, 601, 1251, 1432, 1739, 1978, 1990, 2193
BstH2I RGCGCY 1 cut(s) 854
BstHHI GCGC 1 cut(s) 853
BstKTI GATC 3 cut(s) 817, 1493, 2482
BstMAI GTCTC 6 cut(s) 792, 837, 1393, 1561, 1764, 2501
BstMBI GATC 3 cut(s) 814, 1490, 2479
BstMWI GCNNNNNNNGC 2 cut(s) 391, 1184
BstNSI RCATGY 4 cut(s) 641, 949, 1193, 2226
BstSLI GKGCMC 2 cut(s) 1189, 2173
BstSNI TACGTA 2 cut(s) 869, 2054
BstV1I GCAGC 4 cut(s) 520, 1257, 1491, 1494
BstV2I GAAGAC 3 cut(s) 452, 1643, 2106
BstXI CCANNNNNNTGG 1 cut(s) 2111
BstZ17I GTATAC 1 cut(s) 1828
Bsu15I ATCGAT 1 cut(s) 2556
BsuI GTATCC 1 cut(s) 2342
BsuRI GGCC 5 cut(s) 112, 491, 1653, 1725, 2358
BsuTUI ATCGAT 1 cut(s) 2556
BtgZI GCGATG 1 cut(s) 2340
BtsCI GGATG 8 cut(s) 215, 601, 1251, 1432, 1739, 1978, 1990, 2193
BtsIMutI CAGTG 2 cut(s) 189, 729
Cac8I GCNNGC 1 cut(s) 2323
CciI TCATGA 2 cut(s) 289, 2032
CfoI GCGC 1 cut(s) 853
ClaI ATCGAT 1 cut(s) 2556
CseI GACGC 1 cut(s) 302
Csp6I GTAC 9 cut(s) 195, 472, 903, 1057, 1158, 1594, 1898, 2051, 2455
CspCI CAANNNNNGTGG 4 cut(s) 187, 222, 595, 630
CviQI GTAC 9 cut(s) 195, 472, 903, 1057, 1158, 1594, 1898, 2051, 2455
DdeI CTNAG 6 cut(s) 372, 390, 1014, 1332, 1761, 2075
DpnI GATC 3 cut(s) 816, 1492, 2481
DpnII GATC 3 cut(s) 814, 1490, 2479
DraIII CACNNNGTG 1 cut(s) 2262
EaeI YGGCCR 2 cut(s) 489, 2356
Eam1104I CTCTTC 2 cut(s) 537, 1559
EarI CTCTTC 2 cut(s) 537, 1559
Eco105I TACGTA 2 cut(s) 869, 2054
Eco130I CCWWGG 3 cut(s) 71, 113, 310
Eco24I GRGCYC 1 cut(s) 1812
Eco31I GGTCTC 2 cut(s) 1764, 2501
Eco32I GATATC 1 cut(s) 2554
Eco57I CTGAAG 2 cut(s) 360, 1058
Eco88I CYCGRG 1 cut(s) 181
EcoRV GATATC 1 cut(s) 2554
EcoT14I CCWWGG 3 cut(s) 71, 113, 310
EcoT22I ATGCAT 2 cut(s) 1152, 2547
EcoT38I GRGCYC 1 cut(s) 1812
ErhI CCWWGG 3 cut(s) 71, 113, 310
FaqI GGGAC 2 cut(s) 1259, 2220
FauNDI CATATG 1 cut(s) 894
FblI GTMKAC 1 cut(s) 1827
Fnu4HI GCNGC 4 cut(s) 509, 1271, 1480, 1483
FokI GGATG 8 cut(s) 222, 588, 1238, 1419, 1726, 1985, 1997, 2200
FriOI GRGCYC 1 cut(s) 1812
Fsp4HI GCNGC 4 cut(s) 509, 1271, 1480, 1483
FspBI CTAG 8 cut(s) 72, 462, 885, 1218, 1905, 2066, 2135, 2520
GlaI GCGC 1 cut(s) 852
GluI GCNGC 4 cut(s) 509, 1271, 1480, 1483
GsuI CTGGAG 1 cut(s) 1049
HaeII RGCGCY 1 cut(s) 854
HaeIII GGCC 5 cut(s) 112, 491, 1653, 1725, 2358
HapII CCGG 1 cut(s) 492
HgaI GACGC 1 cut(s) 302
HhaI GCGC 1 cut(s) 853
Hin6I GCGC 1 cut(s) 851
HinP1I GCGC 1 cut(s) 851
HincII GTYRAC 3 cut(s) 336, 438, 2161
HindII GTYRAC 3 cut(s) 336, 438, 2161
HinfI GANTC 9 cut(s) 38, 137, 598, 1306, 1600, 1670, 1817, 2004, 2083
HpaII CCGG 1 cut(s) 492
HphI GGTGA 4 cut(s) 113, 718, 2245, 2345
Hpy188I TCNGA 7 cut(s) 37, 133, 586, 757, 1605, 1764, 1807
Hpy188III TCNNGA 8 cut(s) 290, 1028, 1070, 1379, 2033, 2129, 2488, 2549
Hpy99I CGWCG 2 cut(s) 1686, 2304
HpyAV CCTTC 6 cut(s) 754, 790, 1084, 1701, 1774, 1864
HpyCH4III ACNGT 9 cut(s) 733, 1753, 1994, 2124, 2239, 2315, 2454, 2459, 2512
HpyCH4IV ACGT 8 cut(s) 440, 625, 868, 1660, 2053, 2299, 2352, 2473
HpyF10VI GCNNNNNNNGC 2 cut(s) 391, 1184
HpyF3I CTNAG 6 cut(s) 372, 390, 1014, 1332, 1761, 2075
HpySE526I ACGT 8 cut(s) 440, 625, 868, 1660, 2053, 2299, 2352, 2473
HspAI GCGC 1 cut(s) 851
KpnI GGTACC 1 cut(s) 198
Kzo9I GATC 3 cut(s) 814, 1490, 2479
LmnI GCTCC 2 cut(s) 799, 2401
Lsp1109I GCAGC 4 cut(s) 520, 1257, 1491, 1494
LweI GCATC 5 cut(s) 200, 559, 1063, 2308, 2554
MaeI CTAG 8 cut(s) 72, 462, 885, 1218, 1905, 2066, 2135, 2520
MaeII ACGT 8 cut(s) 440, 625, 868, 1660, 2053, 2299, 2352, 2473
MaeIII GTNAC 6 cut(s) 22, 706, 832, 1403, 2233, 2266
MalI GATC 3 cut(s) 816, 1492, 2481
MboI GATC 3 cut(s) 814, 1490, 2479
MfeI CAATTG 2 cut(s) 512, 2343
MhlI GDGCHC 4 cut(s) 1189, 1812, 1854, 2173
MlyI GAGTC 4 cut(s) 592, 1315, 1826, 2013
MmeI TCCRAC 2 cut(s) 31, 220
Mph1103I ATGCAT 2 cut(s) 1152, 2547
MslI CAYNNNNRTG 5 cut(s) 288, 321, 962, 1423, 2109
MspI CCGG 1 cut(s) 492
MunI CAATTG 2 cut(s) 512, 2343
Mva1269I GAATGC 3 cut(s) 172, 865, 1324
MwoI GCNNNNNNNGC 2 cut(s) 391, 1184
NdeI CATATG 1 cut(s) 894
NdeII GATC 3 cut(s) 814, 1490, 2479
NlaIV GGNNCC 1 cut(s) 196
NmuCI GTSAC 2 cut(s) 706, 2233
NsiI ATGCAT 2 cut(s) 1152, 2547
NspI RCATGY 4 cut(s) 641, 949, 1193, 2226
OliI CACNNNNGTG 1 cut(s) 1423
PagI TCATGA 2 cut(s) 289, 2032
PciI ACATGT 2 cut(s) 637, 2222
PctI GAATGC 3 cut(s) 172, 865, 1324
PfeI GAWTC 5 cut(s) 38, 137, 1600, 1670, 2083
PkrI GCNGC 4 cut(s) 510, 1272, 1481, 1484
PleI GAGTC 4 cut(s) 592, 1314, 1825, 2012
PpsI GAGTC 4 cut(s) 592, 1314, 1825, 2012
Ppu21I YACGTR 3 cut(s) 869, 1661, 2054
PscI ACATGT 2 cut(s) 637, 2222
PsiI TTATAA 1 cut(s) 647
Psp1406I AACGTT 1 cut(s) 440
PspN4I GGNNCC 1 cut(s) 196
RsaI GTAC 9 cut(s) 196, 473, 904, 1058, 1159, 1595, 1899, 2052, 2456
RsaNI GTAC 9 cut(s) 195, 472, 903, 1057, 1158, 1594, 1898, 2051, 2455
RseI CAYNNNNRTG 5 cut(s) 288, 321, 962, 1423, 2109
SatI GCNGC 4 cut(s) 509, 1271, 1480, 1483
Sau3AI GATC 3 cut(s) 814, 1490, 2479
SchI GAGTC 4 cut(s) 592, 1315, 1826, 2013
SduI GDGCHC 4 cut(s) 1189, 1812, 1854, 2173
SfaNI GCATC 5 cut(s) 200, 559, 1063, 2308, 2554
SmiMI CAYNNNNRTG 5 cut(s) 288, 321, 962, 1423, 2109
SmlI CTYRAG 1 cut(s) 1421
SmoI CTYRAG 1 cut(s) 1421
SnaBI TACGTA 2 cut(s) 869, 2054
SspI AATATT 2 cut(s) 562, 876
SspMI CTAG 8 cut(s) 72, 462, 885, 1218, 1905, 2066, 2135, 2520
StyI CCWWGG 3 cut(s) 71, 113, 310
TaaI ACNGT 9 cut(s) 733, 1753, 1994, 2124, 2239, 2315, 2454, 2459, 2512
TaiI ACGT 8 cut(s) 443, 628, 871, 1663, 2056, 2302, 2355, 2476
TaqI TCGA 5 cut(s) 1648, 1775, 2086, 2302, 2556
TatI WGTACW 3 cut(s) 902, 1593, 1897
TfiI GAWTC 5 cut(s) 38, 137, 1600, 1670, 2083
TscAI CASTG 2 cut(s) 196, 736
TseFI GTSAC 2 cut(s) 706, 2233
TseI GCWGC 4 cut(s) 508, 1270, 1479, 1482
Tsp45I GTSAC 2 cut(s) 706, 2233
TspGWI ACGGA 2 cut(s) 76, 1985
TspRI CASTG 2 cut(s) 196, 736
VneI GTGCAC 2 cut(s) 1185, 2169
XapI RAATTY 5 cut(s) 142, 376, 396, 2336, 2377
XceI RCATGY 4 cut(s) 641, 949, 1193, 2226
XcmI CCANNNNNNNNNTGG 2 cut(s) 2200, 2441
XmaJI CCTAGG 1 cut(s) 71
XmiI GTMKAC 1 cut(s) 1827
XspI CTAG 8 cut(s) 72, 462, 885, 1218, 1905, 2066, 2135, 2520
Zsp2I ATGCAT 2 cut(s) 1152, 2547
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.