Rh2DG078400

protein FAR1-RELATED SEQUENCE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0000143
Physical Location & Seq
Forward (+)
6051135 .. 6051572
438 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG078400.1

Sequence Viewer

Length: 438 bp
ATGTGGCCATTTTTCTTAGGAGCCAATGATGTAAAGGATGATGGTAATTGTGGTTTTAGAGCTATAGCTGAGTTTATGGGATATGGTGAGAATAATTGGCGTCGTGTACGCAAAGAATTGTTGCAAGAGTTTCATCAAAATAAGCATGCATATCGATTACTATTCCGATATGCTGAGCGACTAGAGGAGGTGGAGAAGAGATTAGATTATTTTGATGACTTTCCGCCTGAAGAACATTGGTTCTTAATACCAGATATGGGATACATTGTCGCAAATTGTTACAAAATTGTGCTGATGCATTTTGGTTTACCTTTGATACCTTGTTTTATCTTCTTACCAATGAATAGTATCACACTTCCTATAGTTGATCGTCGTGAAATTTCAATTGGTTTTGTCAAAAGATGTCACTTTGTCCAGATATTCTATACATGTTGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AFT FAR1 MULE

Protein Analysis

145

Amino Acids

17.44

Weight (kDa)

6.2

Isoelectric Point (pI)

37.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000143)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G76710 AT1G76710 AT1G76710 AT1G76710
fragaria_vesca FvH4_1g20063 FvH4_2g15231 FvH4_3g04011 FvH4_3g28681 FvH4_4g01411 FvH4_4g10181 FvH4_4g15922 FvH4_4g16651 FvH4_4g16652 FvH4_5g13892 FvH4_5g13893 FvH4_5g20623 FvH4_5g20623 FvH4_5g20623 FvH4_5g20623 FvH4_5g25511 FvH4_6g12551 FvH4_6g12552 FvH4_6g38841 FvH4_7g04391
malus_domestica MD05G1031300.v1.1 MD05G1031400.v1.1 MD05G1031500.v1.1 MD08G1164400.v1.1 MD10G1032900.v1.1 MD10G1033000.v1.1 MD10G1033100.v1.1
prunus_persica Prupe.3G240700_v2.0.a1 Prupe.7G144600_v2.0.a1 Prupe.8G038500_v2.0.a1 Prupe.8G038500_v2.0.a1
pyrus_communis pycom05g02250 pycom05g02260 pycom05g02270 pycom05g02280 pycom08g14160 pycom10g02100 pycom10g02110 pycom10g02130
rosa_chinensis RchiOBHm_Chr1g0329481 RchiOBHm_Chr1g0329491 RchiOBHm_Chr1g0341531 RchiOBHm_Chr3g0464811 RchiOBHm_Chr3g0494701 RchiOBHm_Chr3g0497501 RchiOBHm_Chr4g0385841 RchiOBHm_Chr5g0061181 RchiOBHm_Chr6g0263001 RchiOBHm_Chr7g0193111 RchiOBHm_Chr7g0206281 RchiOBHm_Chr7g0206311
rosa_laevigata RLG00000018908 RLG00000028528 RLG00000028803 RLG00000029882 RLG00000029883 RLG00000030361
rosa_multiflora Rmu_co8196328.1_g000001 Rmu_co8259135.1_g000001 Rmu_co8269185.1_g000001 Rmu_sc0000076.1_g000019 Rmu_sc0000311.1_g000007 Rmu_sc0000429.1_g000038 Rmu_sc0000429.1_g000039 Rmu_sc0000429.1_g000040 Rmu_sc0000511.1_g000005 Rmu_sc0000539.1_g000054 Rmu_sc0000566.1_g000039 Rmu_sc0000805.1_g000032 Rmu_sc0000870.1_g000073 Rmu_sc0000870.1_g000074 Rmu_sc0001010.1_g000018 Rmu_sc0001083.1_g000013 Rmu_sc0001114.1_g000011 Rmu_sc0001702.1_g000027 Rmu_sc0001779.1_g000012 Rmu_sc0002923.1_g000036 Rmu_sc0003242.1_g000011 Rmu_sc0003291.1_g000036 Rmu_sc0003393.1_g000012 Rmu_sc0003872.1_g000016 Rmu_sc0003872.1_g000017 Rmu_sc0003872.1_g000018 Rmu_sc0004084.1_g000020 Rmu_sc0004386.1_g000005 Rmu_sc0004622.1_g000005 Rmu_sc0004742.1_g000021 Rmu_sc0004755.1_g000020 Rmu_sc0004805.1_g000036 Rmu_sc0005065.1_g000006 Rmu_sc0005177.1_g000004 Rmu_sc0006373.1_g000003 Rmu_sc0006373.1_g000004 Rmu_sc0007121.1_g000002 Rmu_sc0007943.1_g000003 Rmu_sc0010368.1_g000006 Rmu_sc0010543.1_g000001 Rmu_sc0012591.1_g000006 Rmu_sc0013504.1_g000009 Rmu_sc0015025.1_g000001 Rmu_sc0016170.1_g000001 Rmu_sc0017156.1_g000001 Rmu_sc0026439.1_g000001
rosa_roxburghii Rroxscaffold_175G00432280 Rroxscaffold_1G00030190 Rroxscaffold_1G00030880 Rroxscaffold_2G00090520 Rroxscaffold_3G00227940 Rroxscaffold_3G00233400 Rroxscaffold_3G00238500 Rroxscaffold_3G00251650 Rroxscaffold_4G00301570 Rroxscaffold_4G00321040 Rroxscaffold_5G00350880 Rroxscaffold_7G00184400
rosa_rugosa Rorug01G0080800 Rorug01G0080900 Rorug01G0193900 Rorug02G0275900 Rorug02G0275900 Rorug02G0275900 Rorug02G0305400 Rorug02G0311800 Rorug02G0350400 Rorug02G0381300 Rorug03G0136700 Rorug03G0181900 Rorug03G0268000 Rorug04G0301600 Rorug05G0175100 Rorug05G0250700 Rorug05G0298200 Rorug05G0596000 Rorug06G0029500 Rorug07G0094300 Rorug07G0094300 Rorug07G0095400 Rorug07G0140100
rosa_samantha Rh1AG099200 Rh1AG190500 Rh1BG078900 Rh1BG079000 Rh1BG079100 Rh1CG084600 Rh1CG084700 Rh1CG095300 Rh1CG175900 Rh1DG103300 Rh1DG150400 Rh2AG079300 Rh2AG272400 Rh2AG464800 Rh2AG507400 Rh2DG078300 Rh2DG078400 Rh3CG206900 Rh3CG295400 Rh3DG206800 Rh3DG356200 Rh4CG071500 Rh4CG179200 Rh4DG064700 Rh5CG362400 Rh7AG212300 Rh7AG226200 Rh7BG222200
rosa_wichuraiana Rw0G009990 Rw0G011260 Rw0G011270 Rw0G012910 Rw0G013740 Rw1G007740 Rw1G013050 Rw1G014230 Rw2G014270 Rw3G012720 Rw3G028110 Rw4G006630 Rw4G015270 Rw4G016160 Rw4G031380 Rw5G011440 Rw5G029180 Rw5G048360 Rw5G048430 Rw5G048780 Rw6G005250 Rw6G006390 Rw7G002840 Rw7G014080 Rw7G019650 Rw7G032790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 224
AcoI YGGCCR 1 cut(s) 5
AcsI RAATTY 1 cut(s) 378
AcuI CTGAAG 1 cut(s) 249
AcyI GRCGYC 1 cut(s) 100
AfaI GTAC 1 cut(s) 108
AfiI CCNNNNNNNGG 1 cut(s) 257
AflIII ACRYGT 1 cut(s) 428
AgsI TTSAA 1 cut(s) 384
AjuI GAANNNNNNNTTGG 2 cut(s) 369, 401
AluBI AGCT 2 cut(s) 62, 68
AluI AGCT 2 cut(s) 62, 68
AoxI GGCC 1 cut(s) 5
ApoI RAATTY 1 cut(s) 378
AsuHPI GGTGA 1 cut(s) 98
BalI TGGCCA 1 cut(s) 7
BccI CCATC 1 cut(s) 35
BcgI CGANNNNNNTGC 2 cut(s) 134, 168
BciVI GTATCC 1 cut(s) 254
BfaI CTAG 1 cut(s) 182
BfmI CTRYAG 2 cut(s) 63, 360
BfuI GTATCC 1 cut(s) 254
BlpI GCTNAGC 1 cut(s) 174
BmiI GGNNCC 1 cut(s) 22
BmsI GCATC 1 cut(s) 285
Bpu1102I GCTNAGC 1 cut(s) 174
Bsa29I ATCGAT 1 cut(s) 154
BsaHI GRCGYC 1 cut(s) 100
Bsc4I CCNNNNNNNGG 1 cut(s) 257
BseCI ATCGAT 1 cut(s) 154
BseGI GGATG 1 cut(s) 43
BseLI CCNNNNNNNGG 1 cut(s) 257
BseMII CTCAG 2 cut(s) 60, 165
BseRI GAGGAG 1 cut(s) 200
BshFI GGCC 1 cut(s) 7
BshVI ATCGAT 1 cut(s) 154
BslI CCNNNNNNNGG 1 cut(s) 257
BsnI GGCC 1 cut(s) 7
Bsp143I GATC 1 cut(s) 367
Bsp1720I GCTNAGC 1 cut(s) 174
BspACI CCGC 1 cut(s) 224
BspANI GGCC 1 cut(s) 7
BspCNI CTCAG 2 cut(s) 61, 166
BspDI ATCGAT 1 cut(s) 154
BspLI GGNNCC 1 cut(s) 22
BssMI GATC 1 cut(s) 367
BssNI GRCGYC 1 cut(s) 100
Bst6I CTCTTC 1 cut(s) 191
BstACI GRCGYC 1 cut(s) 100
BstC8I GCNNGC 1 cut(s) 147
BstDEI CTNAG 3 cut(s) 16, 69, 174
BstF5I GGATG 1 cut(s) 43
BstKTI GATC 1 cut(s) 370
BstMBI GATC 1 cut(s) 367
BstNSI RCATGY 2 cut(s) 149, 432
BstSFI CTRYAG 2 cut(s) 63, 360
Bsu15I ATCGAT 1 cut(s) 154
BsuI GTATCC 1 cut(s) 254
BsuRI GGCC 1 cut(s) 7
BsuTUI ATCGAT 1 cut(s) 154
BtsCI GGATG 1 cut(s) 43
Cac8I GCNNGC 1 cut(s) 147
ClaI ATCGAT 1 cut(s) 154
CseI GACGC 1 cut(s) 89
Csp6I GTAC 1 cut(s) 107
CviAII CATG 2 cut(s) 146, 429
CviJI RGCY 4 cut(s) 7, 23, 62, 68
CviKI_1 RGCY 4 cut(s) 7, 23, 62, 68
CviQI GTAC 1 cut(s) 107
DdeI CTNAG 3 cut(s) 16, 69, 174
DpnI GATC 1 cut(s) 369
DpnII GATC 1 cut(s) 367
EaeI YGGCCR 1 cut(s) 5
Eam1104I CTCTTC 1 cut(s) 191
EarI CTCTTC 1 cut(s) 191
EciI GGCGGA 1 cut(s) 213
Eco57I CTGAAG 1 cut(s) 249
EcoT22I ATGCAT 2 cut(s) 151, 300
FaeI CATG 2 cut(s) 149, 432
FatI CATG 2 cut(s) 145, 428
FokI GGATG 1 cut(s) 50
FspBI CTAG 1 cut(s) 182
HaeIII GGCC 1 cut(s) 7
HgaI GACGC 1 cut(s) 89
Hin1I GRCGYC 1 cut(s) 100
Hin1II CATG 2 cut(s) 149, 432
HphI GGTGA 1 cut(s) 98
Hpy166II GTNNAC 2 cut(s) 107, 308
Hpy188I TCNGA 1 cut(s) 167
Hpy188III TCNNGA 2 cut(s) 374, 415
Hpy8I GTNNAC 2 cut(s) 107, 308
Hpy99I CGWCG 2 cut(s) 105, 375
HpyCH4V TGCA 3 cut(s) 124, 149, 298
HpyF3I CTNAG 3 cut(s) 16, 69, 174
Hsp92I GRCGYC 1 cut(s) 100
Hsp92II CATG 2 cut(s) 149, 432
Kzo9I GATC 1 cut(s) 367
LmnI GCTCC 1 cut(s) 20
LpnPI CCDG 3 cut(s) 240, 264, 428
LweI GCATC 1 cut(s) 285
MaeI CTAG 1 cut(s) 182
MaeIII GTNAC 2 cut(s) 278, 404
MalI GATC 1 cut(s) 369
MboI GATC 1 cut(s) 367
MboII GAAGA 3 cut(s) 208, 242, 322
MfeI CAATTG 1 cut(s) 384
MlsI TGGCCA 1 cut(s) 7
MluCI AATT 7 cut(s) 46, 94, 116, 274, 285, 378, 384
MluNI TGGCCA 1 cut(s) 7
MnlI CCTC 2 cut(s) 178, 181
Mox20I TGGCCA 1 cut(s) 7
Mph1103I ATGCAT 2 cut(s) 151, 300
MscI TGGCCA 1 cut(s) 7
MseI TTAA 1 cut(s) 245
Msp20I TGGCCA 1 cut(s) 7
MunI CAATTG 1 cut(s) 384
NdeII GATC 1 cut(s) 367
NlaIII CATG 2 cut(s) 149, 432
NlaIV GGNNCC 1 cut(s) 22
NmuCI GTSAC 1 cut(s) 404
NsiI ATGCAT 2 cut(s) 151, 300
NspI RCATGY 2 cut(s) 149, 432
PaeI GCATGC 1 cut(s) 149
PciI ACATGT 1 cut(s) 428
PscI ACATGT 1 cut(s) 428
PspN4I GGNNCC 1 cut(s) 22
RsaI GTAC 1 cut(s) 108
RsaNI GTAC 1 cut(s) 107
SaqAI TTAA 1 cut(s) 245
Sau3AI GATC 1 cut(s) 367
SetI ASST 5 cut(s) 64, 70, 192, 313, 322
SfaNI GCATC 1 cut(s) 285
SfcI CTRYAG 2 cut(s) 63, 360
SgeI CNNG 9 cut(s) 116, 137, 158, 194, 239, 263, 333, 386, 427
SphI GCATGC 1 cut(s) 149
Sse9I AATT 7 cut(s) 46, 94, 116, 274, 285, 378, 384
SsiI CCGC 1 cut(s) 224
SspMI CTAG 1 cut(s) 182
TaqI TCGA 1 cut(s) 154
TasI AATT 7 cut(s) 46, 94, 116, 274, 285, 378, 384
Tru1I TTAA 1 cut(s) 245
Tru9I TTAA 1 cut(s) 245
TseFI GTSAC 1 cut(s) 404
Tsp45I GTSAC 1 cut(s) 404
TspDTI ATGAA 2 cut(s) 122, 356
XapI RAATTY 1 cut(s) 378
XceI RCATGY 2 cut(s) 149, 432
XspI CTAG 1 cut(s) 182
Zsp2I ATGCAT 2 cut(s) 151, 300
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.