Rmu_sc0006373.1_g000004

protein FAR1-RELATED SEQUENCE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006373.1
OG0000143
Physical Location & Seq
Forward (+)
26778 .. 27479
702 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006373.1_g000004.1.cds

Sequence Viewer

Length: 600 bp
atgtatcagcaatacattgcaaaccaaactgatgttgatatggatggaaattgtggatatagagtcgttgctatctcaatggggtttggtcatgatggttggcgtacggtacataaacatttattagatgagcttagagggaaccgcagtttctatgaagaccacatttttggggctagacggtttcatgaactagagaattgccttgactattttgttgatgggtttgcacctgaaaacttttggatgaccatgcctgatatgggacatattattgccacatgttatggtgtgacagtaatccatttatcatccaccatgtgcattacatttcttcctttgtataataggaatgaatgtcgaaatgaatatcgtggtgattgcgagggtggtgagtttgcaattggatatgttggccgtcattttgttaaggtaaaatatggaatagttactcctctatggcacaggtaccaaggtaataatggacagttgtacaacatttatgagcaacgcatagatcaattcaagaaactcgaaaatatggaagacgttgccaccacagatacatttgcagacattgtgcatcttgatatcgattga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE

Protein Analysis

199

Amino Acids

23.24

Weight (kDa)

5.27

Isoelectric Point (pI)

29.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000143)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G76710 AT1G76710 AT1G76710 AT1G76710
fragaria_vesca FvH4_1g20063 FvH4_2g15231 FvH4_3g04011 FvH4_3g28681 FvH4_4g01411 FvH4_4g10181 FvH4_4g15922 FvH4_4g16651 FvH4_4g16652 FvH4_5g13892 FvH4_5g13893 FvH4_5g20623 FvH4_5g20623 FvH4_5g20623 FvH4_5g20623 FvH4_5g25511 FvH4_6g12551 FvH4_6g12552 FvH4_6g38841 FvH4_7g04391
malus_domestica MD05G1031300.v1.1 MD05G1031400.v1.1 MD05G1031500.v1.1 MD08G1164400.v1.1 MD10G1032900.v1.1 MD10G1033000.v1.1 MD10G1033100.v1.1
prunus_persica Prupe.3G240700_v2.0.a1 Prupe.7G144600_v2.0.a1 Prupe.8G038500_v2.0.a1 Prupe.8G038500_v2.0.a1
pyrus_communis pycom05g02250 pycom05g02260 pycom05g02270 pycom05g02280 pycom08g14160 pycom10g02100 pycom10g02110 pycom10g02130
rosa_chinensis RchiOBHm_Chr1g0329481 RchiOBHm_Chr1g0329491 RchiOBHm_Chr1g0341531 RchiOBHm_Chr3g0464811 RchiOBHm_Chr3g0494701 RchiOBHm_Chr3g0497501 RchiOBHm_Chr4g0385841 RchiOBHm_Chr5g0061181 RchiOBHm_Chr6g0263001 RchiOBHm_Chr7g0193111 RchiOBHm_Chr7g0206281 RchiOBHm_Chr7g0206311
rosa_laevigata RLG00000018908 RLG00000028528 RLG00000028803 RLG00000029882 RLG00000029883 RLG00000030361
rosa_multiflora Rmu_co8196328.1_g000001 Rmu_co8259135.1_g000001 Rmu_co8269185.1_g000001 Rmu_sc0000076.1_g000019 Rmu_sc0000311.1_g000007 Rmu_sc0000429.1_g000038 Rmu_sc0000429.1_g000039 Rmu_sc0000429.1_g000040 Rmu_sc0000511.1_g000005 Rmu_sc0000539.1_g000054 Rmu_sc0000566.1_g000039 Rmu_sc0000805.1_g000032 Rmu_sc0000870.1_g000073 Rmu_sc0000870.1_g000074 Rmu_sc0001010.1_g000018 Rmu_sc0001083.1_g000013 Rmu_sc0001114.1_g000011 Rmu_sc0001702.1_g000027 Rmu_sc0001779.1_g000012 Rmu_sc0002923.1_g000036 Rmu_sc0003242.1_g000011 Rmu_sc0003291.1_g000036 Rmu_sc0003393.1_g000012 Rmu_sc0003872.1_g000016 Rmu_sc0003872.1_g000017 Rmu_sc0003872.1_g000018 Rmu_sc0004084.1_g000020 Rmu_sc0004386.1_g000005 Rmu_sc0004622.1_g000005 Rmu_sc0004742.1_g000021 Rmu_sc0004755.1_g000020 Rmu_sc0004805.1_g000036 Rmu_sc0005065.1_g000006 Rmu_sc0005177.1_g000004 Rmu_sc0006373.1_g000003 Rmu_sc0006373.1_g000004 Rmu_sc0007121.1_g000002 Rmu_sc0007943.1_g000003 Rmu_sc0010368.1_g000006 Rmu_sc0010543.1_g000001 Rmu_sc0012591.1_g000006 Rmu_sc0013504.1_g000009 Rmu_sc0015025.1_g000001 Rmu_sc0016170.1_g000001 Rmu_sc0017156.1_g000001 Rmu_sc0026439.1_g000001
rosa_roxburghii Rroxscaffold_175G00432280 Rroxscaffold_1G00030190 Rroxscaffold_1G00030880 Rroxscaffold_2G00090520 Rroxscaffold_3G00227940 Rroxscaffold_3G00233400 Rroxscaffold_3G00238500 Rroxscaffold_3G00251650 Rroxscaffold_4G00301570 Rroxscaffold_4G00321040 Rroxscaffold_5G00350880 Rroxscaffold_7G00184400
rosa_rugosa Rorug01G0080800 Rorug01G0080900 Rorug01G0193900 Rorug02G0275900 Rorug02G0275900 Rorug02G0275900 Rorug02G0305400 Rorug02G0311800 Rorug02G0350400 Rorug02G0381300 Rorug03G0136700 Rorug03G0181900 Rorug03G0268000 Rorug04G0301600 Rorug05G0175100 Rorug05G0250700 Rorug05G0298200 Rorug05G0596000 Rorug06G0029500 Rorug07G0094300 Rorug07G0094300 Rorug07G0095400 Rorug07G0140100
rosa_samantha Rh1AG099200 Rh1AG190500 Rh1BG078900 Rh1BG079000 Rh1BG079100 Rh1CG084600 Rh1CG084700 Rh1CG095300 Rh1CG175900 Rh1DG103300 Rh1DG150400 Rh2AG079300 Rh2AG272400 Rh2AG464800 Rh2AG507400 Rh2DG078300 Rh2DG078400 Rh3CG206900 Rh3CG295400 Rh3DG206800 Rh3DG356200 Rh4CG071500 Rh4CG179200 Rh4DG064700 Rh5CG362400 Rh7AG212300 Rh7AG226200 Rh7BG222200
rosa_wichuraiana Rw0G009990 Rw0G011260 Rw0G011270 Rw0G012910 Rw0G013740 Rw1G007740 Rw1G013050 Rw1G014230 Rw2G014270 Rw3G012720 Rw3G028110 Rw4G006630 Rw4G015270 Rw4G016160 Rw4G031380 Rw5G011440 Rw5G029180 Rw5G048360 Rw5G048430 Rw5G048780 Rw6G005250 Rw6G006390 Rw7G002840 Rw7G014080 Rw7G019650 Rw7G032790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 468
AccB1I GGYRCC 1 cut(s) 468
AciI CCGC 1 cut(s) 145
AcoI YGGCCR 1 cut(s) 415
AdeI CACNNNGTG 1 cut(s) 321
AfaI GTAC 4 cut(s) 106, 111, 470, 494
AfiI CCNNNNNNNGG 1 cut(s) 263
AflIII ACRYGT 1 cut(s) 281
AgsI TTSAA 1 cut(s) 526
AluBI AGCT 1 cut(s) 133
AluI AGCT 1 cut(s) 133
AoxI GGCC 1 cut(s) 415
ArsI GACNNNNNNTTYG 2 cut(s) 152, 184
Asp718I GGTACC 1 cut(s) 468
AsuHPI GGTGA 2 cut(s) 389, 404
BaeI ACNNNNGTAYC 2 cut(s) 460, 493
BanI GGYRCC 1 cut(s) 468
BbsI GAAGAC 2 cut(s) 165, 552
BccI CCATC 3 cut(s) 38, 89, 215
BceAI ACGGC 1 cut(s) 402
BfaI CTAG 2 cut(s) 177, 194
BmiI GGNNCC 2 cut(s) 143, 470
BmsI GCATC 1 cut(s) 592
BpiI GAAGAC 2 cut(s) 165, 552
Bsa29I ATCGAT 1 cut(s) 594
BsaJI CCNNGG 1 cut(s) 472
Bsc4I CCNNNNNNNGG 1 cut(s) 263
Bse3DI GCAATG 1 cut(s) 15
BseCI ATCGAT 1 cut(s) 594
BseDI CCNNGG 1 cut(s) 472
BseGI GGATG 3 cut(s) 49, 252, 311
BseLI CCNNNNNNNGG 1 cut(s) 263
BseMI GCAATG 1 cut(s) 15
BseRI GAGGAG 1 cut(s) 444
BshFI GGCC 1 cut(s) 417
BshNI GGYRCC 1 cut(s) 468
BshVI ATCGAT 1 cut(s) 594
BsiWI CGTACG 1 cut(s) 104
BslFI GGGAC 1 cut(s) 279
BslI CCNNNNNNNGG 1 cut(s) 263
BsmFI GGGAC 1 cut(s) 279
BsnI GGCC 1 cut(s) 417
Bsp1407I TGTACA 1 cut(s) 492
Bsp143I GATC 1 cut(s) 517
BspACI CCGC 1 cut(s) 145
BspANI GGCC 1 cut(s) 417
BspDI ATCGAT 1 cut(s) 594
BspHI TCATGA 2 cut(s) 91, 187
BspLI GGNNCC 2 cut(s) 143, 470
BspT107I GGYRCC 1 cut(s) 468
BsrDI GCAATG 1 cut(s) 15
BsrGI TGTACA 1 cut(s) 492
BssECI CCNNGG 1 cut(s) 472
BssMI GATC 1 cut(s) 517
BssT1I CCWWGG 1 cut(s) 472
Bst4CI ACNGT 4 cut(s) 109, 183, 298, 489
BstAUI TGTACA 1 cut(s) 492
BstDEI CTNAG 1 cut(s) 134
BstF5I GGATG 3 cut(s) 49, 252, 311
BstKTI GATC 1 cut(s) 520
BstMBI GATC 1 cut(s) 517
BstNSI RCATGY 1 cut(s) 285
BstV2I GAAGAC 2 cut(s) 165, 552
BstXI CCANNNNNNTGG 1 cut(s) 170
Bsu15I ATCGAT 1 cut(s) 594
BsuRI GGCC 1 cut(s) 417
BsuTUI ATCGAT 1 cut(s) 594
BtsCI GGATG 3 cut(s) 49, 252, 311
CciI TCATGA 2 cut(s) 91, 187
ClaI ATCGAT 1 cut(s) 594
Csp6I GTAC 4 cut(s) 105, 110, 469, 493
CviAII CATG 5 cut(s) 92, 188, 253, 282, 319
CviJI RGCY 3 cut(s) 133, 176, 417
CviKI_1 RGCY 3 cut(s) 133, 176, 417
CviQI GTAC 4 cut(s) 105, 110, 469, 493
DdeI CTNAG 1 cut(s) 134
DpnI GATC 1 cut(s) 519
DpnII GATC 1 cut(s) 517
DraIII CACNNNGTG 1 cut(s) 321
EaeI YGGCCR 1 cut(s) 415
Eco130I CCWWGG 1 cut(s) 472
Eco32I GATATC 1 cut(s) 592
EcoRV GATATC 1 cut(s) 592
EcoT14I CCWWGG 1 cut(s) 472
ErhI CCWWGG 1 cut(s) 472
FaeI CATG 5 cut(s) 95, 191, 256, 285, 322
FaqI GGGAC 1 cut(s) 279
FatI CATG 5 cut(s) 91, 187, 252, 281, 318
FokI GGATG 3 cut(s) 56, 259, 298
FspBI CTAG 2 cut(s) 177, 194
HaeIII GGCC 1 cut(s) 417
Hin1II CATG 5 cut(s) 95, 191, 256, 285, 322
HinfI GANTC 1 cut(s) 63
HphI GGTGA 2 cut(s) 389, 404
Hpy188III TCNNGA 4 cut(s) 92, 188, 526, 587
HpyCH4III ACNGT 4 cut(s) 109, 183, 298, 489
HpyCH4IV ACGT 1 cut(s) 549
HpyCH4V TGCA 6 cut(s) 20, 230, 324, 401, 572, 583
HpyF3I CTNAG 1 cut(s) 134
HpySE526I ACGT 1 cut(s) 549
Hsp92II CATG 5 cut(s) 95, 191, 256, 285, 322
KpnI GGTACC 1 cut(s) 472
Kzo9I GATC 1 cut(s) 517
LpnPI CCDG 3 cut(s) 246, 270, 451
LweI GCATC 1 cut(s) 592
MaeI CTAG 2 cut(s) 177, 194
MaeII ACGT 1 cut(s) 549
MaeIII GTNAC 2 cut(s) 292, 448
MalI GATC 1 cut(s) 519
MboI GATC 1 cut(s) 517
MboII GAAGA 3 cut(s) 170, 326, 557
MfeI CAATTG 1 cut(s) 402
MluCI AATT 4 cut(s) 49, 199, 402, 521
MlyI GAGTC 1 cut(s) 72
MnlI CCTC 3 cut(s) 131, 379, 465
MseI TTAA 1 cut(s) 429
MunI CAATTG 1 cut(s) 402
NdeII GATC 1 cut(s) 517
NlaIII CATG 5 cut(s) 95, 191, 256, 285, 322
NlaIV GGNNCC 2 cut(s) 143, 470
NmuCI GTSAC 1 cut(s) 292
NspI RCATGY 1 cut(s) 285
PagI TCATGA 2 cut(s) 91, 187
PciI ACATGT 1 cut(s) 281
Pfl23II CGTACG 1 cut(s) 104
PleI GAGTC 1 cut(s) 71
PpsI GAGTC 1 cut(s) 71
PscI ACATGT 1 cut(s) 281
PspLI CGTACG 1 cut(s) 104
PspN4I GGNNCC 2 cut(s) 143, 470
RsaI GTAC 4 cut(s) 106, 111, 470, 494
RsaNI GTAC 4 cut(s) 105, 110, 469, 493
SaqAI TTAA 1 cut(s) 429
Sau3AI GATC 1 cut(s) 517
SchI GAGTC 1 cut(s) 72
SetI ASST 6 cut(s) 135, 235, 435, 470, 478, 552
SfaNI GCATC 1 cut(s) 592
Sse9I AATT 4 cut(s) 49, 199, 402, 521
SsiI CCGC 1 cut(s) 145
SspMI CTAG 2 cut(s) 177, 194
StyI CCWWGG 1 cut(s) 472
TaaI ACNGT 4 cut(s) 109, 183, 298, 489
TaiI ACGT 1 cut(s) 552
TaqI TCGA 3 cut(s) 361, 534, 594
TasI AATT 4 cut(s) 49, 199, 402, 521
TatI WGTACW 1 cut(s) 492
Tru1I TTAA 1 cut(s) 429
Tru9I TTAA 1 cut(s) 429
TseFI GTSAC 1 cut(s) 292
Tsp45I GTSAC 1 cut(s) 292
TspDTI ATGAA 5 cut(s) 171, 176, 204, 369, 381
XceI RCATGY 1 cut(s) 285
XcmI CCANNNNNNNNNTGG 2 cut(s) 259, 479
XspI CTAG 2 cut(s) 177, 194
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.