Rh4CG071500

protein FAR1-RELATED SEQUENCE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0000143
Physical Location & Seq
Reverse (-)
13213600 .. 13214618
1019 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG071500.1

Sequence Viewer

Length: 483 bp
ATGAATGCATTTTCAGGCCATGATAGTCATTTATCGGATCCTACAGTTGGGTCTAGAGCTCAAGGAAAAAATTTGAAGAAGCATTCAAAGAATCAAAGAGAAGGAAGGACCAAAGAGTCGGCAACATCCATAAAAAGGCAAAACAAAGAGTTTAAAAATTCAAAACAAAAGGTGTCAAACAAAACTTGCTCCGCAATACCACCCAGATTGACGAATGAATGTCGAAATGAATATCGTGGTGATTGCGAGGGTGGTGAGTTTTCAATTGGATATGTTGGCCGTCATTTTGTTAAGGTAAATTTGATATCTCAATCTGTTCCAATTCCTCCAGTTACTCCTCTATGGCACATGTACCAAGTTAATAATGGACAATTGTACAACATTTATGAGCAACGCATAGATCAATTCAAGAAACTCGAAAATATGGAAGACGTTGCCACCACAGATACATTTGCAGACATTGTGCATCTTGATATCGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE

Protein Analysis

160

Amino Acids

18.23

Weight (kDa)

8.96

Isoelectric Point (pI)

29.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000143)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G76710 AT1G76710 AT1G76710 AT1G76710
fragaria_vesca FvH4_1g20063 FvH4_2g15231 FvH4_3g04011 FvH4_3g28681 FvH4_4g01411 FvH4_4g10181 FvH4_4g15922 FvH4_4g16651 FvH4_4g16652 FvH4_5g13892 FvH4_5g13893 FvH4_5g20623 FvH4_5g20623 FvH4_5g20623 FvH4_5g20623 FvH4_5g25511 FvH4_6g12551 FvH4_6g12552 FvH4_6g38841 FvH4_7g04391
malus_domestica MD05G1031300.v1.1 MD05G1031400.v1.1 MD05G1031500.v1.1 MD08G1164400.v1.1 MD10G1032900.v1.1 MD10G1033000.v1.1 MD10G1033100.v1.1
prunus_persica Prupe.3G240700_v2.0.a1 Prupe.7G144600_v2.0.a1 Prupe.8G038500_v2.0.a1 Prupe.8G038500_v2.0.a1
pyrus_communis pycom05g02250 pycom05g02260 pycom05g02270 pycom05g02280 pycom08g14160 pycom10g02100 pycom10g02110 pycom10g02130
rosa_chinensis RchiOBHm_Chr1g0329481 RchiOBHm_Chr1g0329491 RchiOBHm_Chr1g0341531 RchiOBHm_Chr3g0464811 RchiOBHm_Chr3g0494701 RchiOBHm_Chr3g0497501 RchiOBHm_Chr4g0385841 RchiOBHm_Chr5g0061181 RchiOBHm_Chr6g0263001 RchiOBHm_Chr7g0193111 RchiOBHm_Chr7g0206281 RchiOBHm_Chr7g0206311
rosa_laevigata RLG00000018908 RLG00000028528 RLG00000028803 RLG00000029882 RLG00000029883 RLG00000030361
rosa_multiflora Rmu_co8196328.1_g000001 Rmu_co8259135.1_g000001 Rmu_co8269185.1_g000001 Rmu_sc0000076.1_g000019 Rmu_sc0000311.1_g000007 Rmu_sc0000429.1_g000038 Rmu_sc0000429.1_g000039 Rmu_sc0000429.1_g000040 Rmu_sc0000511.1_g000005 Rmu_sc0000539.1_g000054 Rmu_sc0000566.1_g000039 Rmu_sc0000805.1_g000032 Rmu_sc0000870.1_g000073 Rmu_sc0000870.1_g000074 Rmu_sc0001010.1_g000018 Rmu_sc0001083.1_g000013 Rmu_sc0001114.1_g000011 Rmu_sc0001702.1_g000027 Rmu_sc0001779.1_g000012 Rmu_sc0002923.1_g000036 Rmu_sc0003242.1_g000011 Rmu_sc0003291.1_g000036 Rmu_sc0003393.1_g000012 Rmu_sc0003872.1_g000016 Rmu_sc0003872.1_g000017 Rmu_sc0003872.1_g000018 Rmu_sc0004084.1_g000020 Rmu_sc0004386.1_g000005 Rmu_sc0004622.1_g000005 Rmu_sc0004742.1_g000021 Rmu_sc0004755.1_g000020 Rmu_sc0004805.1_g000036 Rmu_sc0005065.1_g000006 Rmu_sc0005177.1_g000004 Rmu_sc0006373.1_g000003 Rmu_sc0006373.1_g000004 Rmu_sc0007121.1_g000002 Rmu_sc0007943.1_g000003 Rmu_sc0010368.1_g000006 Rmu_sc0010543.1_g000001 Rmu_sc0012591.1_g000006 Rmu_sc0013504.1_g000009 Rmu_sc0015025.1_g000001 Rmu_sc0016170.1_g000001 Rmu_sc0017156.1_g000001 Rmu_sc0026439.1_g000001
rosa_roxburghii Rroxscaffold_175G00432280 Rroxscaffold_1G00030190 Rroxscaffold_1G00030880 Rroxscaffold_2G00090520 Rroxscaffold_3G00227940 Rroxscaffold_3G00233400 Rroxscaffold_3G00238500 Rroxscaffold_3G00251650 Rroxscaffold_4G00301570 Rroxscaffold_4G00321040 Rroxscaffold_5G00350880 Rroxscaffold_7G00184400
rosa_rugosa Rorug01G0080800 Rorug01G0080900 Rorug01G0193900 Rorug02G0275900 Rorug02G0275900 Rorug02G0275900 Rorug02G0305400 Rorug02G0311800 Rorug02G0350400 Rorug02G0381300 Rorug03G0136700 Rorug03G0181900 Rorug03G0268000 Rorug04G0301600 Rorug05G0175100 Rorug05G0250700 Rorug05G0298200 Rorug05G0596000 Rorug06G0029500 Rorug07G0094300 Rorug07G0094300 Rorug07G0095400 Rorug07G0140100
rosa_samantha Rh1AG099200 Rh1AG190500 Rh1BG078900 Rh1BG079000 Rh1BG079100 Rh1CG084600 Rh1CG084700 Rh1CG095300 Rh1CG175900 Rh1DG103300 Rh1DG150400 Rh2AG079300 Rh2AG272400 Rh2AG464800 Rh2AG507400 Rh2DG078300 Rh2DG078400 Rh3CG206900 Rh3CG295400 Rh3DG206800 Rh3DG356200 Rh4CG071500 Rh4CG179200 Rh4DG064700 Rh5CG362400 Rh7AG212300 Rh7AG226200 Rh7BG222200
rosa_wichuraiana Rw0G009990 Rw0G011260 Rw0G011270 Rw0G012910 Rw0G013740 Rw1G007740 Rw1G013050 Rw1G014230 Rw2G014270 Rw3G012720 Rw3G028110 Rw4G006630 Rw4G015270 Rw4G016160 Rw4G031380 Rw5G011440 Rw5G029180 Rw5G048360 Rw5G048430 Rw5G048780 Rw6G005250 Rw6G006390 Rw7G002840 Rw7G014080 Rw7G019650 Rw7G032790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 115
AciI CCGC 1 cut(s) 192
AclWI GGATC 2 cut(s) 32, 45
AcoI YGGCCR 1 cut(s) 277
AcsI RAATTY 3 cut(s) 70, 157, 298
AfaI GTAC 2 cut(s) 353, 377
AfiI CCNNNNNNNGG 2 cut(s) 47, 135
AflIII ACRYGT 1 cut(s) 348
AgsI TTSAA 5 cut(s) 76, 87, 162, 264, 409
AluBI AGCT 1 cut(s) 59
AluI AGCT 1 cut(s) 59
Alw21I GWGCWC 1 cut(s) 61
AlwI GGATC 2 cut(s) 32, 45
AoxI GGCC 2 cut(s) 16, 277
ApoI RAATTY 3 cut(s) 70, 157, 298
AspS9I GGNCC 1 cut(s) 108
AsuHPI GGTGA 2 cut(s) 251, 266
AvaII GGWCC 1 cut(s) 108
BamHI GGATCC 1 cut(s) 37
BanII GRGCYC 1 cut(s) 61
BbsI GAAGAC 1 cut(s) 435
Bbv12I GWGCWC 1 cut(s) 61
BceAI ACGGC 1 cut(s) 264
BfaI CTAG 1 cut(s) 54
BfmI CTRYAG 1 cut(s) 42
Bme18I GGWCC 1 cut(s) 108
BmgT120I GGNCC 1 cut(s) 108
BmiI GGNNCC 1 cut(s) 39
BmsI GCATC 1 cut(s) 475
BpiI GAAGAC 1 cut(s) 435
BpmI CTGGAG 1 cut(s) 312
BpuEI CTTGAG 1 cut(s) 45
Bsa29I ATCGAT 1 cut(s) 477
Bsc4I CCNNNNNNNGG 2 cut(s) 47, 135
Bse1I ACTGG 1 cut(s) 329
BseCI ATCGAT 1 cut(s) 477
BseGI GGATG 1 cut(s) 125
BseLI CCNNNNNNNGG 2 cut(s) 47, 135
BseNI ACTGG 1 cut(s) 329
BseRI GAGGAG 1 cut(s) 327
BshFI GGCC 2 cut(s) 18, 279
BshVI ATCGAT 1 cut(s) 477
BsiHKAI GWGCWC 1 cut(s) 61
BslI CCNNNNNNNGG 2 cut(s) 47, 135
BsmI GAATGC 2 cut(s) 10, 82
BsnI GGCC 2 cut(s) 18, 279
Bsp1286I GDGCHC 1 cut(s) 61
Bsp1407I TGTACA 1 cut(s) 375
Bsp143I GATC 2 cut(s) 37, 400
BspACI CCGC 1 cut(s) 192
BspANI GGCC 2 cut(s) 18, 279
BspDI ATCGAT 1 cut(s) 477
BspLI GGNNCC 1 cut(s) 39
BspPI GGATC 2 cut(s) 32, 45
BsrGI TGTACA 1 cut(s) 375
BsrI ACTGG 1 cut(s) 329
BssMI GATC 2 cut(s) 37, 400
Bst4CI ACNGT 1 cut(s) 46
BstAUI TGTACA 1 cut(s) 375
BstF5I GGATG 1 cut(s) 125
BstKTI GATC 2 cut(s) 40, 403
BstMBI GATC 2 cut(s) 37, 400
BstNSI RCATGY 1 cut(s) 352
BstSFI CTRYAG 1 cut(s) 42
BstV2I GAAGAC 1 cut(s) 435
BstX2I RGATCY 1 cut(s) 37
BstYI RGATCY 1 cut(s) 37
Bsu15I ATCGAT 1 cut(s) 477
BsuRI GGCC 2 cut(s) 18, 279
BsuTUI ATCGAT 1 cut(s) 477
BtsCI GGATG 1 cut(s) 125
Cfr13I GGNCC 1 cut(s) 108
ClaI ATCGAT 1 cut(s) 477
Csp6I GTAC 2 cut(s) 352, 376
CspCI CAANNNNNGTGG 2 cut(s) 189, 224
CviAII CATG 2 cut(s) 20, 349
CviJI RGCY 3 cut(s) 18, 59, 279
CviKI_1 RGCY 3 cut(s) 18, 59, 279
CviQI GTAC 2 cut(s) 352, 376
DpnI GATC 2 cut(s) 39, 402
DpnII GATC 2 cut(s) 37, 400
DraI TTTAAA 1 cut(s) 154
DrdI GACNNNNNNGTC 1 cut(s) 115
DseDI GACNNNNNNGTC 1 cut(s) 115
EaeI YGGCCR 1 cut(s) 277
Ecl136II GAGCTC 1 cut(s) 59
Eco24I GRGCYC 1 cut(s) 61
Eco32I GATATC 2 cut(s) 306, 475
Eco47I GGWCC 1 cut(s) 108
Eco53kI GAGCTC 1 cut(s) 59
EcoICRI GAGCTC 1 cut(s) 59
EcoRV GATATC 2 cut(s) 306, 475
EcoT22I ATGCAT 1 cut(s) 10
EcoT38I GRGCYC 1 cut(s) 61
FaeI CATG 2 cut(s) 23, 352
FaiI YATR 8 cut(s) 21, 131, 273, 343, 350, 387, 398, 425
FatI CATG 2 cut(s) 19, 348
FokI GGATG 1 cut(s) 112
FriOI GRGCYC 1 cut(s) 61
FspBI CTAG 1 cut(s) 54
GsuI CTGGAG 1 cut(s) 312
HaeIII GGCC 2 cut(s) 18, 279
Hin1II CATG 2 cut(s) 23, 352
HinfI GANTC 2 cut(s) 91, 116
HphI GGTGA 2 cut(s) 251, 266
Hpy188I TCNGA 1 cut(s) 37
Hpy188III TCNNGA 3 cut(s) 54, 409, 470
HpyAV CCTTC 2 cut(s) 95, 99
HpyCH4III ACNGT 1 cut(s) 46
HpyCH4IV ACGT 1 cut(s) 432
HpyCH4V TGCA 3 cut(s) 8, 455, 466
HpySE526I ACGT 1 cut(s) 432
Hsp92II CATG 2 cut(s) 23, 352
Kzo9I GATC 2 cut(s) 37, 400
LmnI GCTCC 1 cut(s) 194
LpnPI CCDG 2 cut(s) 217, 342
LweI GCATC 1 cut(s) 475
MaeI CTAG 1 cut(s) 54
MaeII ACGT 1 cut(s) 432
MaeIII GTNAC 1 cut(s) 331
MalI GATC 2 cut(s) 39, 402
MboI GATC 2 cut(s) 37, 400
MboII GAAGA 2 cut(s) 88, 440
MfeI CAATTG 2 cut(s) 264, 371
MflI RGATCY 1 cut(s) 37
MhlI GDGCHC 1 cut(s) 61
MluCI AATT 7 cut(s) 70, 157, 264, 298, 321, 371, 404
MlyI GAGTC 1 cut(s) 125
MnlI CCTC 3 cut(s) 241, 336, 348
Mph1103I ATGCAT 1 cut(s) 10
MseI TTAA 3 cut(s) 153, 291, 360
MunI CAATTG 2 cut(s) 264, 371
Mva1269I GAATGC 2 cut(s) 10, 82
NdeII GATC 2 cut(s) 37, 400
NlaIII CATG 2 cut(s) 23, 352
NlaIV GGNNCC 1 cut(s) 39
NsiI ATGCAT 1 cut(s) 10
NspI RCATGY 1 cut(s) 352
PciI ACATGT 1 cut(s) 348
PctI GAATGC 2 cut(s) 10, 82
PfeI GAWTC 1 cut(s) 91
PleI GAGTC 1 cut(s) 124
PpsI GAGTC 1 cut(s) 124
PscI ACATGT 1 cut(s) 348
Psp124BI GAGCTC 1 cut(s) 61
PspN4I GGNNCC 1 cut(s) 39
PspPI GGNCC 1 cut(s) 108
PsuI RGATCY 1 cut(s) 37
RsaI GTAC 2 cut(s) 353, 377
RsaNI GTAC 2 cut(s) 352, 376
SacI GAGCTC 1 cut(s) 61
SaqAI TTAA 3 cut(s) 153, 291, 360
Sau3AI GATC 2 cut(s) 37, 400
Sau96I GGNCC 1 cut(s) 108
SchI GAGTC 1 cut(s) 125
SduI GDGCHC 1 cut(s) 61
SetI ASST 4 cut(s) 61, 174, 297, 435
SfaNI GCATC 1 cut(s) 475
SfcI CTRYAG 1 cut(s) 42
SinI GGWCC 1 cut(s) 108
SmlI CTYRAG 1 cut(s) 60
SmoI CTYRAG 1 cut(s) 60
Sse9I AATT 7 cut(s) 70, 157, 264, 298, 321, 371, 404
SsiI CCGC 1 cut(s) 192
SspMI CTAG 1 cut(s) 54
SstI GAGCTC 1 cut(s) 61
TaaI ACNGT 1 cut(s) 46
TaiI ACGT 1 cut(s) 435
TaqI TCGA 3 cut(s) 223, 417, 477
TasI AATT 7 cut(s) 70, 157, 264, 298, 321, 371, 404
TatI WGTACW 1 cut(s) 375
TfiI GAWTC 1 cut(s) 91
Tru1I TTAA 3 cut(s) 153, 291, 360
Tru9I TTAA 3 cut(s) 153, 291, 360
TspDTI ATGAA 3 cut(s) 17, 231, 243
VpaK11BI GGWCC 1 cut(s) 108
XapI RAATTY 3 cut(s) 70, 157, 298
XbaI TCTAGA 1 cut(s) 53
XceI RCATGY 1 cut(s) 352
XcmI CCANNNNNNNNNTGG 1 cut(s) 362
XspI CTAG 1 cut(s) 54
Zsp2I ATGCAT 1 cut(s) 10
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.