Rorug02G0305400

protein FAR1-RELATED SEQUENCE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0000143
Physical Location & Seq
Forward (+)
34561037 .. 34561821
785 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0305400.1

Sequence Viewer

Length: 573 bp
ATGGAGCTACAAACCCAGCAACAAATCGAGGATGGAGGAAACAACCAAGCAGCCGGGAGTAGTGCCAACACAGATTTCTGGCGAAGCCGTGCCAGGTGGGTTCCTACTCCAGATCAAATAAGGATCCTCAAGGATCTTTACTACGACAAGGGAGTTAAGCGCCCAACTACAGAGCATATTCACGAGATCTGTCTCCAGCTGAACCAGTATGGACATGTTGAGGGCAAGAACATTTATTTTTGGTTCCAGAATGTCAGGGCTCGAGAGAAGCAGATGAAGAGGTGCAATCAGGCTGCTCAAGTGCCCATGGGAACTAGTTCTCCTGGTACTGGTGGATCCATTGATCTCAATTTTGGGTCCACTGGTTCTACTGGTGCTGGAGGACAAACATCCCTGCAACAACGAGGAGGAGATCACCAGGAGATTGAAACCCTTCCATTGTTCCCCATGCATGGTGAGGACATCTTGGGCATCATGAAGACTACTTCCGAGGGAGGTAGCGGTTATGGCGGTGGCTCTCACATTTCCCTTGAGCTCAGCCTCAACTCCTACAGAGATGCAGACATGGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AFT FAR1 MULE

Protein Analysis

190

Amino Acids

20.86

Weight (kDa)

5.84

Isoelectric Point (pI)

55.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Homeodomain PF00046 30 - 91 7.2e-10 Homeodomain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000143)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G76710 AT1G76710 AT1G76710 AT1G76710
fragaria_vesca FvH4_1g20063 FvH4_2g15231 FvH4_3g04011 FvH4_3g28681 FvH4_4g01411 FvH4_4g10181 FvH4_4g15922 FvH4_4g16651 FvH4_4g16652 FvH4_5g13892 FvH4_5g13893 FvH4_5g20623 FvH4_5g20623 FvH4_5g20623 FvH4_5g20623 FvH4_5g25511 FvH4_6g12551 FvH4_6g12552 FvH4_6g38841 FvH4_7g04391
malus_domestica MD05G1031300.v1.1 MD05G1031400.v1.1 MD05G1031500.v1.1 MD08G1164400.v1.1 MD10G1032900.v1.1 MD10G1033000.v1.1 MD10G1033100.v1.1
prunus_persica Prupe.3G240700_v2.0.a1 Prupe.7G144600_v2.0.a1 Prupe.8G038500_v2.0.a1 Prupe.8G038500_v2.0.a1
pyrus_communis pycom05g02250 pycom05g02260 pycom05g02270 pycom05g02280 pycom08g14160 pycom10g02100 pycom10g02110 pycom10g02130
rosa_chinensis RchiOBHm_Chr1g0329481 RchiOBHm_Chr1g0329491 RchiOBHm_Chr1g0341531 RchiOBHm_Chr3g0464811 RchiOBHm_Chr3g0494701 RchiOBHm_Chr3g0497501 RchiOBHm_Chr4g0385841 RchiOBHm_Chr5g0061181 RchiOBHm_Chr6g0263001 RchiOBHm_Chr7g0193111 RchiOBHm_Chr7g0206281 RchiOBHm_Chr7g0206311
rosa_laevigata RLG00000018908 RLG00000028528 RLG00000028803 RLG00000029882 RLG00000029883 RLG00000030361
rosa_multiflora Rmu_co8196328.1_g000001 Rmu_co8259135.1_g000001 Rmu_co8269185.1_g000001 Rmu_sc0000076.1_g000019 Rmu_sc0000311.1_g000007 Rmu_sc0000429.1_g000038 Rmu_sc0000429.1_g000039 Rmu_sc0000429.1_g000040 Rmu_sc0000511.1_g000005 Rmu_sc0000539.1_g000054 Rmu_sc0000566.1_g000039 Rmu_sc0000805.1_g000032 Rmu_sc0000870.1_g000073 Rmu_sc0000870.1_g000074 Rmu_sc0001010.1_g000018 Rmu_sc0001083.1_g000013 Rmu_sc0001114.1_g000011 Rmu_sc0001702.1_g000027 Rmu_sc0001779.1_g000012 Rmu_sc0002923.1_g000036 Rmu_sc0003242.1_g000011 Rmu_sc0003291.1_g000036 Rmu_sc0003393.1_g000012 Rmu_sc0003872.1_g000016 Rmu_sc0003872.1_g000017 Rmu_sc0003872.1_g000018 Rmu_sc0004084.1_g000020 Rmu_sc0004386.1_g000005 Rmu_sc0004622.1_g000005 Rmu_sc0004742.1_g000021 Rmu_sc0004755.1_g000020 Rmu_sc0004805.1_g000036 Rmu_sc0005065.1_g000006 Rmu_sc0005177.1_g000004 Rmu_sc0006373.1_g000003 Rmu_sc0006373.1_g000004 Rmu_sc0007121.1_g000002 Rmu_sc0007943.1_g000003 Rmu_sc0010368.1_g000006 Rmu_sc0010543.1_g000001 Rmu_sc0012591.1_g000006 Rmu_sc0013504.1_g000009 Rmu_sc0015025.1_g000001 Rmu_sc0016170.1_g000001 Rmu_sc0017156.1_g000001 Rmu_sc0026439.1_g000001
rosa_roxburghii Rroxscaffold_175G00432280 Rroxscaffold_1G00030190 Rroxscaffold_1G00030880 Rroxscaffold_2G00090520 Rroxscaffold_3G00227940 Rroxscaffold_3G00233400 Rroxscaffold_3G00238500 Rroxscaffold_3G00251650 Rroxscaffold_4G00301570 Rroxscaffold_4G00321040 Rroxscaffold_5G00350880 Rroxscaffold_7G00184400
rosa_rugosa Rorug01G0080800 Rorug01G0080900 Rorug01G0193900 Rorug02G0275900 Rorug02G0275900 Rorug02G0275900 Rorug02G0305400 Rorug02G0311800 Rorug02G0350400 Rorug02G0381300 Rorug03G0136700 Rorug03G0181900 Rorug03G0268000 Rorug04G0301600 Rorug05G0175100 Rorug05G0250700 Rorug05G0298200 Rorug05G0596000 Rorug06G0029500 Rorug07G0094300 Rorug07G0094300 Rorug07G0095400 Rorug07G0140100
rosa_samantha Rh1AG099200 Rh1AG190500 Rh1BG078900 Rh1BG079000 Rh1BG079100 Rh1CG084600 Rh1CG084700 Rh1CG095300 Rh1CG175900 Rh1DG103300 Rh1DG150400 Rh2AG079300 Rh2AG272400 Rh2AG464800 Rh2AG507400 Rh2DG078300 Rh2DG078400 Rh3CG206900 Rh3CG295400 Rh3DG206800 Rh3DG356200 Rh4CG071500 Rh4CG179200 Rh4DG064700 Rh5CG362400 Rh7AG212300 Rh7AG226200 Rh7BG222200
rosa_wichuraiana Rw0G009990 Rw0G011260 Rw0G011270 Rw0G012910 Rw0G013740 Rw1G007740 Rw1G013050 Rw1G014230 Rw2G014270 Rw3G012720 Rw3G028110 Rw4G006630 Rw4G015270 Rw4G016160 Rw4G031380 Rw5G011440 Rw5G029180 Rw5G048360 Rw5G048430 Rw5G048780 Rw6G005250 Rw6G006390 Rw7G002840 Rw7G014080 Rw7G019650 Rw7G032790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 501, 510
AclWI GGATC 5 cut(s) 118, 131, 141, 330, 343
AfaI GTAC 1 cut(s) 328
AfiI CCNNNNNNNGG 2 cut(s) 329, 452
AflIII ACRYGT 1 cut(s) 214
AgsI TTSAA 1 cut(s) 428
AhlI ACTAGT 1 cut(s) 314
AjnI CCWGG 3 cut(s) 92, 322, 417
AjuI GAANNNNNNNTTGG 2 cut(s) 59, 91
AloI GAACNNNNNNTCC 2 cut(s) 304, 336
AluBI AGCT 3 cut(s) 7, 199, 535
AluI AGCT 3 cut(s) 7, 199, 535
Alw21I GWGCWC 1 cut(s) 537
Alw26I GTCTC 1 cut(s) 197
AlwI GGATC 5 cut(s) 118, 131, 141, 330, 343
Ama87I CYCGRG 1 cut(s) 261
ApeKI GCWGC 2 cut(s) 50, 293
Asp700I GAANNNNTTC 2 cut(s) 316, 432
AspLEI GCGC 1 cut(s) 162
AspS9I GGNCC 1 cut(s) 357
AsuC2I CCSGG 1 cut(s) 55
AsuHPI GGTGA 2 cut(s) 407, 467
AvaI CYCGRG 1 cut(s) 261
AvaII GGWCC 1 cut(s) 357
BaeGI GKGCMC 1 cut(s) 306
BamHI GGATCC 2 cut(s) 123, 335
BanII GRGCYC 2 cut(s) 262, 537
BauI CACGAG 1 cut(s) 182
BbsI GAAGAC 1 cut(s) 485
Bbv12I GWGCWC 1 cut(s) 537
BbvI GCAGC 2 cut(s) 62, 280
BccI CCATC 1 cut(s) 26
BceAI ACGGC 1 cut(s) 72
BciT130I CCWGG 3 cut(s) 94, 324, 419
BcnI CCSGG 1 cut(s) 55
BcoDI GTCTC 1 cut(s) 197
BcuI ACTAGT 1 cut(s) 314
BfaI CTAG 1 cut(s) 315
BfmI CTRYAG 2 cut(s) 168, 550
BfoI RGCGCY 1 cut(s) 163
BglII AGATCT 1 cut(s) 186
BisI GCNGC 2 cut(s) 51, 294
BlpI GCTNAGC 1 cut(s) 536
BlsI GCNGC 2 cut(s) 52, 295
Bme1390I CCNGG 4 cut(s) 55, 94, 324, 419
Bme18I GGWCC 1 cut(s) 357
BmeT110I CYCGRG 1 cut(s) 261
BmgT120I GGNCC 1 cut(s) 357
BmiI GGNNCC 5 cut(s) 102, 125, 245, 337, 358
BmrFI CCNGG 4 cut(s) 55, 94, 324, 419
BmsI GCATC 2 cut(s) 480, 547
BpiI GAAGAC 1 cut(s) 485
BpmI CTGGAG 3 cut(s) 93, 179, 399
Bpu1102I GCTNAGC 1 cut(s) 536
BpuEI CTTGAG 3 cut(s) 113, 282, 551
BpuMI CCSGG 1 cut(s) 55
BsaJI CCNNGG 2 cut(s) 306, 489
BsaXI ACNNNNNCTCC 2 cut(s) 304, 334
Bsc4I CCNNNNNNNGG 2 cut(s) 329, 452
Bse1I ACTGG 4 cut(s) 205, 334, 367, 376
BseBI CCWGG 3 cut(s) 94, 324, 419
BseDI CCNNGG 2 cut(s) 306, 489
BseGI GGATG 2 cut(s) 37, 389
BseLI CCNNNNNNNGG 2 cut(s) 329, 452
BseMII CTCAG 1 cut(s) 550
BseNI ACTGG 4 cut(s) 205, 334, 367, 376
BseRI GAGGAG 2 cut(s) 420, 423
BseSI GKGCMC 1 cut(s) 306
BseXI GCAGC 2 cut(s) 62, 280
BseYI CCCAGC 1 cut(s) 15
BsiHKAI GWGCWC 1 cut(s) 537
BsiHKCI CYCGRG 1 cut(s) 261
BsiSI CCGG 1 cut(s) 54
BslI CCNNNNNNNGG 2 cut(s) 329, 452
BsmAI GTCTC 1 cut(s) 197
BsoBI CYCGRG 1 cut(s) 261
Bsp1286I GDGCHC 3 cut(s) 262, 306, 537
Bsp143I GATC 7 cut(s) 112, 123, 133, 186, 335, 343, 412
Bsp1720I GCTNAGC 1 cut(s) 536
Bsp19I CCATGG 1 cut(s) 306
BspACI CCGC 2 cut(s) 501, 510
BspCNI CTCAG 1 cut(s) 549
BspHI TCATGA 1 cut(s) 474
BspLI GGNNCC 5 cut(s) 102, 125, 245, 337, 358
BspPI GGATC 5 cut(s) 118, 131, 141, 330, 343
BsrI ACTGG 4 cut(s) 205, 334, 367, 376
BssECI CCNNGG 2 cut(s) 306, 489
BssMI GATC 7 cut(s) 112, 123, 133, 186, 335, 343, 412
BssSI CACGAG 1 cut(s) 182
BssT1I CCWWGG 1 cut(s) 306
Bst2BI CACGAG 1 cut(s) 182
Bst2UI CCWGG 3 cut(s) 94, 324, 419
Bst6I CTCTTC 1 cut(s) 272
BstDEI CTNAG 2 cut(s) 536, 570
BstDSI CCRYGG 1 cut(s) 306
BstF5I GGATG 2 cut(s) 37, 389
BstH2I RGCGCY 1 cut(s) 163
BstHHI GCGC 1 cut(s) 162
BstKTI GATC 7 cut(s) 115, 126, 136, 189, 338, 346, 415
BstMAI GTCTC 1 cut(s) 197
BstMBI GATC 7 cut(s) 112, 123, 133, 186, 335, 343, 412
BstMWI GCNNNNNNNGC 2 cut(s) 507, 566
BstNI CCWGG 3 cut(s) 94, 324, 419
BstNSI RCATGY 1 cut(s) 218
BstSCI CCNGG 4 cut(s) 53, 92, 322, 417
BstSFI CTRYAG 2 cut(s) 168, 550
BstSLI GKGCMC 1 cut(s) 306
BstV1I GCAGC 2 cut(s) 62, 280
BstV2I GAAGAC 1 cut(s) 485
BstX2I RGATCY 4 cut(s) 123, 133, 186, 335
BstYI RGATCY 4 cut(s) 123, 133, 186, 335
BtgI CCRYGG 1 cut(s) 306
BtsCI GGATG 2 cut(s) 37, 389
BtsIMutI CAGTG 1 cut(s) 360
CciI TCATGA 1 cut(s) 474
CfoI GCGC 1 cut(s) 162
Cfr13I GGNCC 1 cut(s) 357
Csp6I GTAC 1 cut(s) 327
CviAII CATG 6 cut(s) 215, 307, 448, 452, 475, 565
CviQI GTAC 1 cut(s) 327
DdeI CTNAG 2 cut(s) 536, 570
DpnI GATC 7 cut(s) 114, 125, 135, 188, 337, 345, 414
DpnII GATC 7 cut(s) 112, 123, 133, 186, 335, 343, 412
Eam1104I CTCTTC 1 cut(s) 272
EarI CTCTTC 1 cut(s) 272
Ecl136II GAGCTC 1 cut(s) 535
Eco130I CCWWGG 1 cut(s) 306
Eco24I GRGCYC 2 cut(s) 262, 537
Eco47I GGWCC 1 cut(s) 357
Eco53kI GAGCTC 1 cut(s) 535
Eco88I CYCGRG 1 cut(s) 261
EcoICRI GAGCTC 1 cut(s) 535
EcoRII CCWGG 3 cut(s) 92, 322, 417
EcoT14I CCWWGG 1 cut(s) 306
EcoT22I ATGCAT 1 cut(s) 453
EcoT38I GRGCYC 2 cut(s) 262, 537
ErhI CCWWGG 1 cut(s) 306
FaeI CATG 6 cut(s) 218, 310, 451, 455, 478, 568
FaiI YATR 9 cut(s) 177, 210, 216, 308, 449, 453, 476, 507, 566
FatI CATG 6 cut(s) 214, 306, 447, 451, 474, 564
Fnu4HI GCNGC 2 cut(s) 51, 294
FokI GGATG 2 cut(s) 44, 376
FriOI GRGCYC 2 cut(s) 262, 537
Fsp4HI GCNGC 2 cut(s) 51, 294
FspBI CTAG 1 cut(s) 315
GlaI GCGC 1 cut(s) 161
GluI GCNGC 2 cut(s) 51, 294
GsaI CCCAGC 1 cut(s) 19
GsuI CTGGAG 3 cut(s) 93, 179, 399
HaeII RGCGCY 1 cut(s) 163
HapII CCGG 1 cut(s) 54
HhaI GCGC 1 cut(s) 162
Hin1II CATG 6 cut(s) 218, 310, 451, 455, 478, 568
Hin6I GCGC 1 cut(s) 160
HinP1I GCGC 1 cut(s) 160
HpaII CCGG 1 cut(s) 54
HphI GGTGA 2 cut(s) 407, 467
Hpy166II GTNNAC 1 cut(s) 360
Hpy188I TCNGA 1 cut(s) 490
Hpy188III TCNNGA 5 cut(s) 110, 182, 247, 263, 475
Hpy8I GTNNAC 1 cut(s) 360
HpyAV CCTTC 1 cut(s) 443
HpyCH4V TGCA 4 cut(s) 285, 397, 451, 560
HpyF10VI GCNNNNNNNGC 2 cut(s) 507, 566
HpyF3I CTNAG 2 cut(s) 536, 570
Hsp92II CATG 6 cut(s) 218, 310, 451, 455, 478, 568
HspAI GCGC 1 cut(s) 160
Kzo9I GATC 7 cut(s) 112, 123, 133, 186, 335, 343, 412
LmnI GCTCC 1 cut(s) 4
Lsp1109I GCAGC 2 cut(s) 62, 280
LweI GCATC 2 cut(s) 480, 547
MaeI CTAG 1 cut(s) 315
MalI GATC 7 cut(s) 114, 125, 135, 188, 337, 345, 414
MboI GATC 7 cut(s) 112, 123, 133, 186, 335, 343, 412
MboII GAAGA 2 cut(s) 289, 490
MflI RGATCY 4 cut(s) 123, 133, 186, 335
MhlI GDGCHC 3 cut(s) 262, 306, 537
MluCI AATT 1 cut(s) 349
Mph1103I ATGCAT 1 cut(s) 453
MroXI GAANNNNTTC 2 cut(s) 316, 432
MseI TTAA 1 cut(s) 156
MspA1I CMGCKG 1 cut(s) 199
MspI CCGG 1 cut(s) 54
MspR9I CCNGG 4 cut(s) 55, 94, 324, 419
MvaI CCWGG 3 cut(s) 94, 324, 419
MwoI GCNNNNNNNGC 2 cut(s) 507, 566
NciI CCSGG 1 cut(s) 55
NcoI CCATGG 1 cut(s) 306
NdeII GATC 7 cut(s) 112, 123, 133, 186, 335, 343, 412
NlaIII CATG 6 cut(s) 218, 310, 451, 455, 478, 568
NlaIV GGNNCC 5 cut(s) 102, 125, 245, 337, 358
NsiI ATGCAT 1 cut(s) 453
NspI RCATGY 1 cut(s) 218
PaeR7I CTCGAG 1 cut(s) 261
PagI TCATGA 1 cut(s) 474
PciI ACATGT 1 cut(s) 214
PdmI GAANNNNTTC 2 cut(s) 316, 432
PkrI GCNGC 2 cut(s) 52, 295
PscI ACATGT 1 cut(s) 214
Psp124BI GAGCTC 1 cut(s) 537
Psp6I CCWGG 3 cut(s) 92, 322, 417
PspFI CCCAGC 1 cut(s) 15
PspGI CCWGG 3 cut(s) 92, 322, 417
PspN4I GGNNCC 5 cut(s) 102, 125, 245, 337, 358
PspPI GGNCC 1 cut(s) 357
PsuI RGATCY 4 cut(s) 123, 133, 186, 335
PvuII CAGCTG 1 cut(s) 199
RsaI GTAC 1 cut(s) 328
RsaNI GTAC 1 cut(s) 327
SacI GAGCTC 1 cut(s) 537
SaqAI TTAA 1 cut(s) 156
SatI GCNGC 2 cut(s) 51, 294
Sau3AI GATC 7 cut(s) 112, 123, 133, 186, 335, 343, 412
Sau96I GGNCC 1 cut(s) 357
ScrFI CCNGG 4 cut(s) 55, 94, 324, 419
SduI GDGCHC 3 cut(s) 262, 306, 537
SetI ASST 6 cut(s) 9, 98, 201, 284, 499, 537
SfaNI GCATC 2 cut(s) 480, 547
SfcI CTRYAG 2 cut(s) 168, 550
Sfr274I CTCGAG 1 cut(s) 261
SinI GGWCC 1 cut(s) 357
SlaI CTCGAG 1 cut(s) 261
SmlI CTYRAG 4 cut(s) 128, 261, 297, 530
SmoI CTYRAG 4 cut(s) 128, 261, 297, 530
SpeI ACTAGT 1 cut(s) 314
Sse9I AATT 1 cut(s) 349
SsiI CCGC 2 cut(s) 501, 510
SspMI CTAG 1 cut(s) 315
SstI GAGCTC 1 cut(s) 537
StyD4I CCNGG 4 cut(s) 53, 92, 322, 417
StyI CCWWGG 1 cut(s) 306
TaqI TCGA 2 cut(s) 27, 262
TasI AATT 1 cut(s) 349
Tru1I TTAA 1 cut(s) 156
Tru9I TTAA 1 cut(s) 156
TscAI CASTG 1 cut(s) 367
TseI GCWGC 2 cut(s) 50, 293
TspDTI ATGAA 2 cut(s) 290, 491
TspRI CASTG 1 cut(s) 367
VpaK11BI GGWCC 1 cut(s) 357
XceI RCATGY 1 cut(s) 218
XhoI CTCGAG 1 cut(s) 261
XmnI GAANNNNTTC 2 cut(s) 316, 432
XspI CTAG 1 cut(s) 315
Zsp2I ATGCAT 1 cut(s) 453
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.